Low specificity and nested subset structure characterize mycorrhizal associations in five closely related species of the genus Orchis

Most orchid species rely on mycorrhizae to complete their life cycle. Despite a growing body of literature identifying orchid mycorrhizal associations, the nature and specificity of the association between orchid species and mycorrhizal fungi remains largely an open question. Nonetheless, better insights into these obligate plant–fungus associations are indispensable for understanding the biology and conservation of orchid populations. To investigate orchid mycorrhizal associations in five species of the genus Orchis (O. anthropophora, O. mascula, O. militaris, O. purpurea, and O. simia), we developed internal transcribed spacer‐based DNA arrays from extensive clone library sequence data sets, enabling rapid and simultaneous detection of a wide range of basidiomycetous mycorrhizal fungi. A low degree of specificity was observed, with two orchid species associating with nine different fungal partners. Phylogenetic analysis revealed that the majority of Orchis mycorrhizal fungi are members of the Tulasnellaceae, but in some plants, members of the Thelephoraceae, Cortinariaceae and Ceratobasidiaceae were also found. In all species except one (O. mascula), individual plants associated with more than one fungus simultaneously, and in some cases, associations with ≥3 mycorrhizal fungi at the same time were identified. Nestedness analysis showed that orchid mycorrhizal associations were significantly nested, suggesting asymmetric specialization and a dense core of interactions created by symmetric interactions between generalist species. Our results add support to the growing literature that multiple associations may be common among orchids. Low specificity or preference for a widespread fungal symbiont may partly explain the wide distribution of the investigated species.

[1]  M. Hossaert-McKey,et al.  A case study of modified interactions with symbionts in a hybrid mediterranean orchid. , 2010, American journal of botany.

[2]  Jacques Fournel,et al.  Independent recruitment of saprotrophic fungi as mycorrhizal partners by tropical achlorophyllous orchids. , 2009, The New phytologist.

[3]  F. Richard,et al.  Two mycoheterotrophic orchids from Thailand tropical dipterocarpacean forests associate with a broad diversity of ectomycorrhizal fungi , 2009, BMC Biology.

[4]  H. Rasmussen,et al.  Orchid mycorrhiza: implications of a mycophagous life style , 2009 .

[5]  R. Brys,et al.  Biological Flora of the British Isles: Orchis mascula (L.) L. , 2009 .

[6]  D. Read,et al.  Fungal specificity bottlenecks during orchid germination and development , 2008, Molecular ecology.

[7]  M. McCormick,et al.  Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas. , 2008, The New phytologist.

[8]  M. Bidartondo,et al.  Deception above, deception below: linking pollination and mycorrhizal biology of orchids. , 2008, Journal of experimental botany.

[9]  Richard P. Shefferson,et al.  Mycorrhizal interactions of orchids colonizing Estonian mine tailings hills. , 2008, American journal of botany.

[10]  R. Henrik Nilsson,et al.  Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification , 2008, Evolutionary bioinformatics online.

[11]  E. Herre,et al.  Widespread mycorrhizal specificity correlates to mycorrhizal function in the neotropical, epiphytic orchid Ionopsis utricularioides (Orchidaceae). , 2007, American journal of botany.

[12]  Jordi Bascompte,et al.  Ecological networks, nestedness and sampling effort , 2007 .

[13]  J. Dearnaley,et al.  Pterostylis nutans (Orchidaceae) has a specific association with two Ceratobasidium root-associated fungi across its range in eastern Australia , 2007, Mycoscience.

[14]  M. Nei,et al.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.

[15]  J. Dearnaley Further advances in orchid mycorrhizal research , 2007, Mycorrhiza.

[16]  Richard P. Shefferson,et al.  THE EVOLUTIONARY HISTORY OF MYCORRHIZAL SPECIFICITY AMONG LADY'S SLIPPER ORCHIDS , 2007, Evolution; international journal of organic evolution.

[17]  G. Gebauer,et al.  Cephalanthera longifolia (Neottieae, Orchidaceae) is mixotrophic: a comparative study between green and nonphotosynthetic individuals , 2006 .

[18]  Paulo Guimarães,et al.  Improving the analyses of nestedness for large sets of matrices , 2006, Environ. Model. Softw..

[19]  Daniel B. Sloan,et al.  Orchid-fungus fidelity: a marriage meant to last? , 2006, Ecology.

[20]  T. Kull,et al.  A comparative analysis of decline in the distribution ranges of orchid species in Estonia and the United Kingdom , 2006 .

[21]  B. Thomma,et al.  Detecting single nucleotide polymorphisms using DNA arrays for plant pathogen diagnosis. , 2006, FEMS microbiology letters.

[22]  E. Böttger,et al.  Internal Transcribed Spacer Sequencing versus Biochemical Profiling for Identification of Medically Important Yeasts , 2006, Journal of Clinical Microbiology.

[23]  Rytas Vilgalys,et al.  Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples , 2005, Applied and Environmental Microbiology.

[24]  D. Berveiller,et al.  Mixotrophy in orchids: insights from a comparative study of green individuals and nonphotosynthetic individuals of Cephalanthera damasonium. , 2005, The New phytologist.

[25]  Richard P. Shefferson,et al.  High specificity generally characterizes mycorrhizal association in rare lady's slipper orchids, genus Cypripedium , 2005, Molecular ecology.

[26]  D. Read,et al.  Changing partners in the dark: isotopic and molecular evidence of ectomycorrhizal liaisons between forest orchids and trees , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[27]  D. Whigham,et al.  Mycorrhizal diversity in photosynthetic terrestrial orchids. , 2004, The New phytologist.

[28]  D. Call,et al.  Simultaneous Discrimination between 15 Fish Pathogens by Using 16S Ribosomal DNA PCR and DNA Microarrays , 2004, Applied and Environmental Microbiology.

[29]  M. Selosse,et al.  Chlorophyllous and Achlorophyllous Specimens of Epipactis microphylla (Neottieae, Orchidaceae) Are Associated with Ectomycorrhizal Septomycetes, including Truffles , 2004, Microbial Ecology.

[30]  G. Gebauer,et al.  15 N and 13 C natural abundance of autotrophic and myco-heterotrophic orchids provides insight into nitrogen and carbon gain from fungal association. , 2003, The New phytologist.

[31]  Diego P. Vázquez,et al.  NULL MODEL ANALYSES OF SPECIALIZATION IN PLANT–POLLINATOR INTERACTIONS , 2003 .

[32]  Carlos J. Melián,et al.  The nested assembly of plant–animal mutualistic networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[33]  B. Thomma,et al.  Design and development of a DNA array for rapid detection and identification of multiple tomato vascular wilt pathogens. , 2003, FEMS microbiology letters.

[34]  M. Chase,et al.  Molecular phylogenetics and evolution of Orchidinae and selected Habenariinae (Orchidaceae) , 2003 .

[35]  D. Read,et al.  Specialized cheating of the ectomycorrhizal symbiosis by an epiparasitic liverwort , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[36]  M. Weiß,et al.  Communities and populations of sebacinoid basidiomycetes associated with the achlorophyllous orchid Neottia nidus‐avis (L.) L.C.M. Rich. and neighbouring tree ectomycorrhizae , 2002, Molecular ecology.

[37]  H. Nissen,et al.  Development and Evaluation of a 16S Ribosomal DNA Array-Based Approach for Describing Complex Microbial Communities in Ready-To-Eat Vegetable Salads Packed in a Modified Atmosphere , 2002, Applied and Environmental Microbiology.

[38]  Read,et al.  What makes a specialist special? , 1999, Trends in ecology & evolution.

[39]  T. Bruns,et al.  Independent, specialized invasions of ectomycorrhizal mutualism by two nonphotosynthetic orchids. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Mark V. Lomolino,et al.  Investigating causality of nestedness of insular communities: selective immigrations or extinctions? , 1996 .

[41]  Roderic D. M. Page,et al.  TreeView: an application to display phylogenetic trees on personal computers , 1996, Comput. Appl. Biosci..

[42]  H. Rasmussen Terrestrial Orchids: From Seed to Mycotrophic Plant , 1995 .

[43]  Wirt Atmar,et al.  The measure of order and disorder in the distribution of species in fragmented habitat , 1993, Oecologia.

[44]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[45]  Wirt Atmar,et al.  Nested subsets and the structure of insular mammalian faunas and archipelagos , 1986 .

[46]  L. Farrell Biological flora of the British Isles: Orchis militaris L. (O. galatea Poir., O. rivini Gouan, O. tephrosanthos Willd. & Sw.) , 1985 .

[47]  S. Siegel,et al.  Nonparametric Statistics for the Behavioral Sciences , 2022, The SAGE Encyclopedia of Research Design.

[48]  F. Rose Orchis Purpurea Huds. , 1948 .

[49]  H. Jacquemyn,et al.  From extensive clone libraries to comprehensive DNA arrays for the efficient and simultaneous detection and identification of orchid mycorrhizal fungi. , 2010, Journal of Microbiological Methods.

[50]  J. Koch,et al.  Diversity of mycorrhizal fungi of terrestrial orchids: compatibility webs, brief encounters, lasting relationships and alien invasions. , 2007, Mycological research.

[51]  R. Dressler How Many Orchid Species , 2005 .

[52]  R. Brys,et al.  Does nectar reward affect rarity and extinction probabilities of orchid species? An assessment using historical records from Belgium and the Netherlands , 2005 .

[53]  O. L. Pereira,et al.  Morphological and molecular characterization of mycorrhizal fungi isolated from neotropical orchids in Brazil , 2005 .

[54]  Bart Lievens,et al.  Recent developments in diagnostics of plant pathogens: A review , 2005 .

[55]  T. White Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .

[56]  R. Lewin,et al.  Biological flora of the British Isles , 1948 .