Diversity in times of adversity: probabilistic strategies in microbial survival games.

[1]  E. Hill.  Journal of Theoretical Biology , 1961, Nature.

[2]  J. M. Smith,et al.  The Logic of Animal Conflict , 1973, Nature.

[3]  J. Gillespie.  Natural selection with varying selection coefficients – a haploid model , 1973 .

[4]  J. S. GALE,et al.  Logic of animal conflict , 1975, Nature.

[5]  J. Gillespie.  The Role of Migration in the Genetic Structure of Populations in Temporarily and Spatially Varying Environments. I. Conditions for Polymorphism , 1975, The American Naturalist.

[6]  Robert C. Merton,et al.  On the microeconomic theory of investment under uncertainty , 1977 .

[7]  D. E. Matthews.  Evolution and the Theory of Games , 1977 .

[8]  S. Gould,et al.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[9]  S. Hubbell,et al.  Single-nutrient microbial competition: qualitative agreement between experimental and theoretically forecast outcomes. , 1980, Science.

[10]  R M May,et al.  Evolutionarily stable dispersal strategies. , 1980, Journal of theoretical biology.

[11]  C. A. Desoer,et al.  Nonlinear Systems Analysis , 1978 .

[12]  W. McClure,et al.  Rate-limiting steps in RNA chain initiation. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Shripad Tuljapurkar,et al.  Population dynamics in variable environments. III. Evolutionary dynamics of r-selection , 1982 .

[14]  S. W. Christensen,et al.  A stochastic age-structured population model of striped bass (Morone saxatilis) in the Potomac River , 1983 .

[15]  S. Falkow,et al.  Genetic analysis of phase change in Bordetella pertussis , 1984, Infection and immunity.

[16]  J. Abraham,et al.  An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[17]  R. Lande,et al.  Extinction dynamics of age-structured populations in a fluctuating environment. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[18]  W. Aaronson,et al.  Phase variation in Bordetella pertussis by frameshift mutation in a gene for a novel two-component system , 1989, Nature.

[19]  Shripad Tuljapurkar,et al.  Population Dynamics in Variable Environments , 1990 .

[20]  D. Gillespie.  Markov Processes: An Introduction for Physical Scientists , 1991 .

[21]  Stephen P. Boyd,et al.  Linear controller design: limits of performance , 1991 .

[22]  Noga Alon,et al.  The Probabilistic Method , 2015, Fundamentals of Ramsey Theory.

[23]  I. Blomfield,et al.  Environmental regulation of the fim switch controlling type 1 fimbrial phase variation in Escherichia coli K-12: effects of temperature and media , 1993, Journal of bacteriology.

[24]  Elliott Sober,et al.  Optimality Models and the Test of Adaptationism , 1994, The American Naturalist.

[25]  A. Grossman.  Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis. , 1995, Annual review of genetics.

[26]  S. J. Billington,et al.  A multiple site‐specific DNA‐inversion model for the control of Ompi phase and antigenic variation in Dichelobacter nodosus , 1995, Molecular microbiology.

[27]  M. Doebeli.  Updating Gillespie with Controlled Chaos , 1995, The American Naturalist.

[28]  M. Lachmann,et al.  The inheritance of phenotypes: an adaptation to fluctuating environments. , 1996, Journal of theoretical biology.

[29]  J. Mittler.  Evolution of the genetic switch in temperate bacteriophage. I. Basic theory. , 1996, Journal of theoretical biology.

[30]  M. Fussenegger,et al.  Transformation competence and type-4 pilus biogenesis in Neisseria gonorrhoeae--a review. , 1997, Gene.

[31]  S. Gould,et al.  The exaptive excellence of spandrels as a term and prototype. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[32]  A. Arkin,et al.  Stochastic mechanisms in gene expression. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[33]  K. Dybvig,et al.  A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Jeff F. Miller,et al.  Neither the Bvg− Phase nor thevrg6 Locus of Bordetella pertussis Is Required for Respiratory Infection in Mice , 1998, Infection and Immunity.

[35]  J M Whiteley,et al.  Synergistic kinetic interactions between components of the phosphorelay controlling sporulation in Bacillus subtilis. , 1998, Biochemistry.

[36]  Paul E. Turner,et al.  Prisoner's dilemma in an RNA virus , 1999, Nature.

[37]  T. Msadek.  When the going gets tough: survival strategies and environmental signaling networks in Bacillus subtilis. , 1999, Trends in microbiology.

[38]  I. Henderson,et al.  Molecular switches — the ON and OFF of bacterial phase variation , 1999, Molecular microbiology.

[39]  J. Gallant,et al.  Antiretroviral therapy. , 2000, The Hopkins HIV report : a bimonthly newsletter for healthcare providers.

[40]  W. Godwin.  Article in Press , 2000 .

[41]  H. Seifert,et al.  Molecular models accounting for the gene conversion reactions mediating gonococcal pilin antigenic variation , 2000, Molecular microbiology.

[42]  R. Lenski,et al.  The population genetics of ecological specialization in evolving Escherichia coli populations , 2000, Nature.

[43]  B. Hallet,et al.  Playing Dr Jekyll and Mr Hyde: combined mechanisms of phase variation in bacteria. , 2001, Current opinion in microbiology.

[44]  I. Blomfield.  The regulation of pap and type 1 fimbriation in Escherichia coli. , 2001, Advances in microbial physiology.

[45]  A. Moran,et al.  Molecular mimicry in Campylobacter jejuni and Helicobacter pylori lipopolysaccharides: contribution of gastrointestinal infections to autoimmunity. , 2001, Journal of autoimmunity.

[46]  Y. Iwasa,et al.  Variable timing of reproduction in unpredictable environments: adaption of flood plain plants. , 2001, Theoretical population biology.

[47]  J. Coote.  Environmental sensing mechanisms in Bordetella. , 2001, Advances in microbial physiology.

[48]  Derek Abbott,et al.  Brownian ratchets and Parrondo's games. , 2001, Chaos.

[49]  H. Caswell.  Matrix population models : construction, analysis, and interpretation , 2001 .

[50]  M. Hecker,et al.  General stress response of Bacillus subtilis and other bacteria. , 2001, Advances in microbial physiology.

[51]  Manfred Eigen,et al.  Error catastrophe and antiviral strategy , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[52]  D. Low,et al.  Self-perpetuating epigenetic pili switches in bacteria , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[53]  C. Rao,et al.  Control, exploitation and tolerance of intracellular noise , 2002, Nature.

[54]  J. Ferrell.  Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.

[55]  H. Kitano,et al.  Computational systems biology , 2002, Nature.

[56]  Adam P Arkin,et al.  Fifteen minutes of fim: control of type 1 pili expression in E. coli. , 2002, Omics : a journal of integrative biology.

[57]  Michael P H Stumpf,et al.  Herpes viruses hedge their bets , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[58]  Lauren Ancel Meyers,et al.  Fighting change with change: adaptive variation in an uncertain world , 2002 .

[59]  J. Ross,et al.  Signal Processing by Simple Chemical Systems , 2002 .

[60]  L. Håvarstein,et al.  Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[61]  S. Mangan,et al.  Structure and function of the feed-forward loop network motif , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[62]  Paul E. Turner,et al.  Escape from Prisoner’s Dilemma in RNA Phage Φ6 , 2003, The American Naturalist.

[63]  S. Kjelleberg,et al.  Bacterial biofilms: prokaryotic adventures in multicellularity. , 2003, Current opinion in microbiology.

[64]  K. Hughes,et al.  Flagellar Phase Variation in Salmonella enterica Is Mediated by a Posttranscriptional Control Mechanism , 2003, Journal of bacteriology.

[65]  R. Losick,et al.  Cannibalism by Sporulating Bacteria , 2003, Science.

[66]  Paul E Turner,et al.  Escape from Prisoner's Dilemma in RNA phage phi6. , 2003, The American naturalist.

[67]  T. Meyer,et al.  'Small' talk: Opa proteins as mediators of Neisseria-host-cell communication. , 2003, Current opinion in microbiology.

[68]  S. Leibler,et al.  Environmental stresses can alleviate the average deleterious effect of mutations , 2003, Journal of biology.

[69]  Lauren Ancel Meyers,et al.  Epidemiology, hypermutation, within–host evolution and the virulence of Neisseria meningitidis , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[70]  M. Gravenor,et al.  Mutation rates: estimating phase variation rates when fitness differences are present and their impact on population structure. , 2003, Microbiology.

[71]  Hiroaki Kitano,et al.  Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration. , 2003, Omics : a journal of integrative biology.

[72]  P. Sumby,et al.  Phase Variation in the Phage Growth Limitation System of Streptomyces coelicolor A3(2) , 2003, Journal of bacteriology.

[73]  A. Levchenko.  Dynamical and integrative cell signaling: challenges for the new biology , 2003, Biotechnology and bioengineering.

[74]  A. Arkin,et al.  Motifs, modules and games in bacteria. , 2003, Current opinion in microbiology.

[75]  M. Jennings,et al.  Genetic characterization of pilin glycosylation and phase variation in Neisseria meningitidis , 2003, Molecular microbiology.

[76]  Markus J. Herrgård,et al.  Integrating high-throughput and computational data elucidates bacterial networks , 2004, Nature.

[77]  S. Leibler,et al.  Bacterial Persistence as a Phenotypic Switch , 2004, Science.

[78]  J. Collins,et al.  Programmable cells: interfacing natural and engineered gene networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[79]  Adam P Arkin,et al.  Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis , 2004, PLoS biology.

[80]  R. Stewart,et al.  Association and dissociation kinetics for CheY interacting with the P2 domain of CheA. , 2004, Journal of molecular biology.

[81]  Adam P Arkin,et al.  A microbial modified prisoner's dilemma game: how frequency-dependent selection can lead to random phase variation. , 2005, Journal of theoretical biology.

[82]  T. Hughes,et al.  Signals and systems , 2006, Genome Biology.