Single-cell transcriptomics of adult macaque hippocampus reveals neural precursor cell populations

[1]  Anushya Muruganujan,et al.  The Gene Ontology resource: enriching a GOld mine , 2020, Nucleic Acids Res..

[2]  Minoru Kanehisa,et al.  KEGG: integrating viruses and cellular organisms , 2020, Nucleic Acids Res..

[3]  Raphael Gottardo,et al.  Integrated analysis of multimodal single-cell data , 2020, Cell.

[4]  Y. Saeys,et al.  A scalable SCENIC workflow for single-cell gene regulatory network analysis , 2020, Nature Protocols.

[5]  Irene Papatheodorou,et al.  Putative cell type discovery from single-cell gene expression data , 2020, Nature Methods.

[6]  S. Ge,et al.  Circuit Integration Initiation of New Hippocampal Neurons in the Adult Brain. , 2020, Cell reports.

[7]  Minoru Kanehisa,et al.  Toward understanding the origin and evolution of cellular organisms , 2019, Protein science : a publication of the Protein Society.

[8]  D. Bennett,et al.  Human Hippocampal Neurogenesis Persists in Aged Adults and Alzheimer's Disease Patients. , 2019, Cell stem cell.

[9]  J. Vilo,et al.  g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) , 2019, Nucleic Acids Res..

[10]  Allon M Klein,et al.  Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data. , 2019, Cell systems.

[11]  Jesús Ávila,et al.  Adult hippocampal neurogenesis is abundant in neurologically healthy subjects and drops sharply in patients with Alzheimer’s disease , 2019, Nature Medicine.

[12]  Lai Guan Ng,et al.  Dimensionality reduction for visualizing single-cell data using UMAP , 2018, Nature Biotechnology.

[13]  Xuting Bian,et al.  Direct reprogramming of fibroblasts into neural stem cells by single non-neural progenitor transcription factor Ptf1a , 2018, Nature Communications.

[14]  F. Gage,et al.  Human Adult Neurogenesis: Evidence and Remaining Questions. , 2018, Cell stem cell.

[15]  M. Boldrini,et al.  Human Hippocampal Neurogenesis Persists throughout Aging. , 2018, Cell stem cell.

[16]  E. Chang,et al.  Human hippocampal neurogenesis drops sharply in children to undetectable levels in adults , 2018, Nature.

[17]  Fabian J Theis,et al.  SCANPY: large-scale single-cell gene expression data analysis , 2018, Genome Biology.

[18]  J. Aerts,et al.  SCENIC: Single-cell regulatory network inference and clustering , 2017, Nature Methods.

[19]  J. Gonçalves,et al.  Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior , 2016, Cell.

[20]  Reid H. J. Olsen,et al.  Neuronal Circuitry Mechanisms Regulating Adult Mammalian Neurogenesis. , 2016, Cold Spring Harbor perspectives in biology.

[21]  Charles H. Yoon,et al.  Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq , 2016, Science.

[22]  Nadine C. Heyworth,et al.  Age-related changes in dentate gyrus cell numbers, neurogenesis, and associations with cognitive impairments in the rhesus monkey , 2015, Front. Syst. Neurosci..

[23]  P. Linsley,et al.  MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data , 2015, Genome Biology.

[24]  A. Regev,et al.  Spatial reconstruction of single-cell gene expression data , 2015 .

[25]  T. Yuan,et al.  Evidence of adult neurogenesis in non-human primates and human , 2014, Cell and Tissue Research.

[26]  A. Mizrahi,et al.  Odor Processing by Adult-Born Neurons , 2014, Neuron.

[27]  Hagen B. Huttner,et al.  Dynamics of Hippocampal Neurogenesis in Adult Humans , 2013, Cell.

[28]  Sean R. Davis,et al.  NCBI GEO: archive for functional genomics data sets—update , 2012, Nucleic Acids Res..

[29]  C. Spearman.  The proof and measurement of association between two things. , 2015, International journal of epidemiology.

[30]  Larry R Squire,et al.  Dentate gyrus-specific knockdown of adult neurogenesis impairs spatial and object recognition memory in adult rats. , 2009, Learning & memory.

[31]  Jean-Loup Guillaume,et al.  Fast unfolding of communities in large networks , 2008, 0803.0476.

[32]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[33]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[34]  Daniel A. Lim,et al.  Subventricular Zone Astrocytes Are Neural Stem Cells in the Adult Mammalian Brain , 1999, Cell.

[35]  P. Rakić,et al.  Continuation of neurogenesis in the hippocampus of the adult macaque monkey. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[36]  E Gould,et al.  Hippocampal neurogenesis in adult Old World primates. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[37]  F. Gage,et al.  Running increases cell proliferation and neurogenesis in the adult mouse dentate gyrus , 1999, Nature Neuroscience.

[38]  F. Gage,et al.  Neurogenesis in the adult human hippocampus , 1998, Nature Medicine.

[39]  F. Gage,et al.  More hippocampal neurons in adult mice living in an enriched environment , 1997, Nature.

[40]  J. Hinds,et al.  Neurogenesis in the adult rat: electron microscopic analysis of light radioautographs. , 1977, Science.

[41]  J. Altman,et al.  Autoradiographic and histological evidence of postnatal hippocampal neurogenesis in rats , 1965, The Journal of comparative neurology.

[42]  G. J. Glasser,et al.  Critical values of the coefficient of rank correlation for testing the hypothesis of independence , 1961 .

[43]  Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .