New evidences on the altered gut microbiota in autism spectrum disorders

[1]  L. Zolla,et al.  Expression and oxidative modifications of plasma proteins in autism spectrum disorders: Interplay between inflammatory response and lipid peroxidation , 2016, Proteomics. Clinical applications.

[2]  O. Jousson,et al.  Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract , 2016, Front. Microbiol..

[3]  O. Jousson,et al.  Altered gut microbiota in Rett syndrome , 2016, Microbiome.

[4]  Mark Hernandez,et al.  The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health , 2016, Current Environmental Health Reports.

[5]  Manuel A. S. Santos,et al.  Fungal Chitin Induces Trained Immunity in Human Monocytes during Cross-talk of the Host with Saccharomyces cerevisiae* , 2016, The Journal of Biological Chemistry.

[6]  D. Frank,et al.  Comparison of Fecal Microbiota in Children with Autism Spectrum Disorders and Neurotypical Siblings in the Simons Simplex Collection , 2015, PloS one.

[7]  Jeroen Raes,et al.  Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates , 2015, Gut.

[8]  Duccio Cavalieri,et al.  MICCA: a complete and accurate software for taxonomic profiling of metagenomic data , 2015, Scientific Reports.

[9]  S. Mazmanian,et al.  Review Control of Brain Development, Function, and Behavior by the Microbiome Figure 2. Microbiome Influence on Bbb Integrity , 2022 .

[10]  R. Frye,et al.  Gastrointestinal dysfunction in autism spectrum disorder: the role of the mitochondria and the enteric microbiome , 2015, Microbial ecology in health and disease.

[11]  P. Bolton,et al.  Heritability of Autism Spectrum Disorder in a UK Population-Based Twin Sample. , 2015, JAMA psychiatry.

[12]  D. Ostatníková,et al.  Gastrointestinal microbiota in children with autism in Slovakia , 2015, Physiology & Behavior.

[13]  Yongfei Hu,et al.  Dysbiosis of Fungal Microbiota in the Intestinal Mucosa of Patients with Colorectal Adenomas , 2015, Scientific Reports.

[14]  Bennett L. Leventhal,et al.  Genetic Epidemiology and Insights into Interactive Genetic and Environmental Effects in Autism Spectrum Disorders , 2015, Biological Psychiatry.

[15]  G. Arbanas.  Diagnostic and Statistical Manual of Mental Disorders (DSM-5) , 2015 .

[16]  D. Cavalieri,et al.  Richness and diversity of mammalian fungal communities shape innate and adaptive immunity in health and disease , 2014, European journal of immunology.

[17]  M. Netea,et al.  The bacteriome–mycobiome interaction and antifungal host defense , 2014, European journal of immunology.

[18]  David Padua,et al.  Altered brain‐gut axis in autism: Comorbidity or causative mechanisms? , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.

[19]  M. Blaut,et al.  Clostridium ramosum Promotes High-Fat Diet-Induced Obesity in Gnotobiotic Mouse Models , 2014, mBio.

[20]  E. Quigley,et al.  CALL FOR PAPERS NextGen Sequencing Technology-Based Dissection of Physiological Systems Structural changes in the gut microbiome of constipated patients , 2014 .

[21]  H. Barth,et al.  Clostridium and Bacillus Binary Enterotoxins: Bad for the Bowels, and Eukaryotic Being , 2014, Toxins.

[22]  Anthony A. Fodor,et al.  Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer , 2014, Nature Communications.

[23]  Yan Wang,et al.  The role of microbiome in central nervous system disorders , 2014, Brain, Behavior, and Immunity.

[24]  S. Karpen,et al.  Gastrointestinal Symptoms in Autism Spectrum Disorder: A Meta-analysis , 2014, Pediatrics.

[25]  E. Hsiao.  Gastrointestinal Issues in Autism Spectrum Disorder , 2014, Harvard review of psychiatry.

[26]  K. Ray.  Gut microbiota: Microbial metabolites feed into the gut–brain–gut circuit during host metabolism , 2014, Nature Reviews Gastroenterology &Hepatology.

[27]  F. Bäckhed,et al.  Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits , 2014, Cell.

[28]  Jie-shou Li,et al.  Dysbiosis of Gut Fungal Microbiota is Associated With Mucosal Inflammation in Crohn’s Disease , 2013, Journal of clinical gastroenterology.

[29]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[30]  J. Petrosino,et al.  Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders , 2013, Cell.

[31]  A. Rosato,et al.  Toll-like receptor 2 regulates intestinal inflammation by controlling integrity of the enteric nervous system. , 2013, Gastroenterology.

[32]  Michael Weiss,et al.  Towards a unified paradigm for sequence‐based identification of fungi , 2013, Molecular ecology.

[33]  A. De Luca,et al.  Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22. , 2013, Immunity.

[34]  G. Huffnagle,et al.  Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans , 2013, Scientific Reports.

[35]  M. Hattori,et al.  Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota , 2013, Nature.

[36]  Joshua LaBaer,et al.  Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children , 2013, PloS one.

[37]  Julia Oh,et al.  Topographic diversity of fungal and bacterial communities in human skin , 2013, Nature.

[38]  Sang-Uk Seo,et al.  Role of the gut microbiota in immunity and inflammatory disease , 2013, Nature Reviews Immunology.

[39]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[40]  S. Asadi,et al.  Focal brain inflammation and autism , 2013, Journal of Neuroinflammation.

[41]  C. Nordahl,et al.  Levels of Soluble Platelet Endothelial Cell Adhesion Molecule-1 and P-Selectin Are Decreased in Children with Autism Spectrum Disorder , 2012, Biological Psychiatry.

[42]  D. Coury,et al.  Management of Constipation in Children and Adolescents With Autism Spectrum Disorders , 2012, Pediatrics.

[43]  Timothy L. Tickle,et al.  Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment , 2012, Genome Biology.

[44]  N. Sudo.  Role of microbiome in regulating the HPA axis and its relevance to allergy. , 2012, Chemical immunology and allergy.

[45]  M. Dubinsky,et al.  Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis , 2012, Science.

[46]  K. O'Connor,et al.  Expanding the Hygiene Hypothesis: Early Exposure to Infectious Agents Predicts Delayed-Type Hypersensitivity to Candida among Children in Kilimanjaro , 2012, PloS one.

[47]  Pat Levitt,et al.  Gastrointestinal Dysfunction in Autism: Parental Report, Clinical Evaluation, and Associated Factors , 2012, Autism research : official journal of the International Society for Autism Research.

[48]  P. Ashwood,et al.  The role of immune dysfunction in the pathophysiology of autism , 2012, Brain, Behavior, and Immunity.

[49]  K. Berer,et al.  Commensal gut flora and brain autoimmunity: a love or hate affair? , 2012, Acta Neuropathologica.

[50]  W. Lipkin,et al.  Impaired Carbohydrate Digestion and Transport and Mucosal Dysbiosis in the Intestines of Children with Autism and Gastrointestinal Disturbances , 2011, PloS one.

[51]  E. Walker,et al.  Diagnostic and Statistical Manual of Mental Disorders , 2013 .

[52]  C. Huttenhower,et al.  Metagenomic biomarker discovery and explanation , 2011, Genome Biology.

[53]  James B. Adams,et al.  Gastrointestinal flora and gastrointestinal status in children with autism -- comparisons to typical children and correlation with autism severity , 2011, BMC gastroenterology.

[54]  H. Stolp,et al.  Effects of Neonatal Systemic Inflammation on Blood-Brain Barrier Permeability and Behaviour in Juvenile and Adult Rats , 2011, Cardiovascular psychiatry and neurology.

[55]  S. Smeekens,et al.  Candida albicans Dampens Host Defense by Downregulating IL-17 Production , 2010, The Journal of Immunology.

[56]  Eunseog Youn,et al.  Pyrosequencing study of fecal microflora of autistic and control children. , 2010, Anaerobe.

[57]  Paramvir S. Dehal,et al.  FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.

[58]  Rob Knight,et al.  PyNAST: a flexible tool for aligning sequences to a template alignment , 2009, Bioinform..

[59]  D. Drossman,et al.  Functional Bowel Disorders , 1995, The American Journal of Gastroenterology.

[60]  I. Barajon,et al.  Toll-like Receptors 3, 4, and 7 Are Expressed in the Enteric Nervous System and Dorsal Root Ganglia , 2009, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[61]  J. Marchesi,et al.  Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces , 2008, The ISME Journal.

[62]  L. Fulton,et al.  Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. , 2008, Cell host & microbe.

[63]  Lin Chang,et al.  FUNCTIONAL BOWEL DISORDERS , 2018, The American Journal of Gastroenterology.

[64]  Francesco Bistoni,et al.  Functional yet Balanced Reactivity to Candida albicans Requires TRIF, MyD88, and IDO-Dependent Inhibition of Rorc1 , 2007, The Journal of Immunology.

[65]  N. Pace,et al.  Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases , 2007, Proceedings of the National Academy of Sciences.

[66]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[67]  D. Hibbett.  A phylogenetic overview of the Agaricomycotina , 2006, Mycologia.

[68]  Eoin L. Brodie,et al.  Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.

[69]  H. Stolp,et al.  Long‐term changes in blood–brain barrier permeability and white matter following prolonged systemic inflammation in early development in the rat , 2005, The European journal of neuroscience.

[70]  P. Puccetti,et al.  A Crucial Role for Tryptophan Catabolism at the Host/Candida albicans Interface1 , 2005, The Journal of Immunology.

[71]  D. Higgins,et al.  T-Coffee: A novel method for fast and accurate multiple sequence alignment. , 2000, Journal of molecular biology.

[72]  A. Andoh,et al.  Characterization of antibody responses against rectal mucosa‐associated bacterial flora in patients with ulcerative colitis , 2000, Journal of gastroenterology and hepatology.

[73]  G. Zoppi,et al.  The intestinal ecosystem in chronic functional constipation , 1998, Acta paediatrica.

[74]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[75]  S. S. Young,et al.  Resampling-Based Multiple Testing: Examples and Methods for p-Value Adjustment , 1993 .

[76]  Y. Chaubey.  Resampling-Based Multiple Testing: Examples and Methods for p-Value Adjustment , 1993 .

[77]  E. Schopler,et al.  Toward objective classification of childhood autism: Childhood Autism Rating Scale (CARS) , 1980, Journal of autism and developmental disorders.