Global microbialization of coral reefs

[1]  Forest Rohwer,et al.  Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology , 2014, Journal of visualized experiments : JoVE.

[2]  Dennis A. Hansell,et al.  Biogeochemistry of Marine Dissolved Organic Matter: Second Edition , 2014 .

[3]  Craig E. Nelson,et al.  Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors , 2014, Proceedings of the National Academy of Sciences.

[4]  Jack J. Middelburg,et al.  Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral Reefs , 2013, Science.

[5]  Dennis A. Hansell,et al.  Localized refractory dissolved organic carbon sinks in the deep ocean , 2013 .

[6]  Craig E. Nelson,et al.  Influence of coral and algal exudates on microbially mediated reef metabolism , 2013, PeerJ.

[7]  D. Segrè,et al.  The cost of efficiency in energy metabolism , 2013, Proceedings of the National Academy of Sciences.

[8]  R. Milo,et al.  Glycolytic strategy as a tradeoff between energy yield and protein cost , 2013, Proceedings of the National Academy of Sciences.

[9]  Craig E. Nelson,et al.  Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages , 2013, The ISME Journal.

[10]  K. Barott,et al.  Unseen players shape benthic competition on coral reefs. , 2012, Trends in microbiology.

[11]  Barbara A. Bailey,et al.  Assessing Coral Reefs on a Pacific-Wide Scale Using the Microbialization Score , 2012, PloS one.

[12]  J. Smith,et al.  Diel Variability in Seawater pH Relates to Calcification and Benthic Community Structure on Coral Reefs , 2012, PloS one.

[13]  Bernard Henrissat,et al.  Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome , 2012, PLoS Comput. Biol..

[14]  D. Willner,et al.  Black reefs: iron-induced phase shifts on coral reefs , 2012, The ISME Journal.

[15]  Craig E. Nelson,et al.  Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity , 2011, PloS one.

[16]  D. Willner,et al.  Black reefs: iron-induced phase shifts on coral reefs , 2011, The ISME Journal.

[17]  V. Paul,et al.  Allelochemicals produced by Caribbean macroalgae and cyanobacteria have species-specific effects on reef coral microorganisms , 2011, Coral Reefs.

[18]  Robert A. Edwards,et al.  Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..

[19]  Craig E. Nelson,et al.  Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem , 2011, The ISME Journal.

[20]  C. Wild,et al.  Composition analysis of organic matter released by cosmopolitan coral reef-associated green algae , 2010 .

[21]  C. Wild,et al.  Organic matter release by Red Sea coral reef organisms-Potential effects on microbial activity and in situ O2 availability , 2010 .

[22]  C. Wild,et al.  Organic matter release by the dominant primary producers in a Caribbean reef lagoon: implication for in situ O2 availability , 2010 .

[23]  Ning Ma,et al.  BLAST+: architecture and applications , 2009, BMC Bioinformatics.

[24]  Dennis A. Hansell,et al.  Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights , 2009 .

[25]  Matthew Z. DeMaere,et al.  The genomic basis of trophic strategy in marine bacteria , 2009, Proceedings of the National Academy of Sciences.

[26]  C. Heip,et al.  Seafloor ecosystem functioning: the importance of organic matter priming , 2009, Marine biology.

[27]  Florent E. Angly,et al.  Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa , 2008, Proceedings of the National Academy of Sciences.

[28]  O. Hoegh-Guldberg,et al.  Ocean acidification causes bleaching and productivity loss in coral reef builders , 2008, Proceedings of the National Academy of Sciences.

[29]  R. Sandaa,et al.  Counterintuitive carbon-to-nutrient coupling in an Arctic pelagic ecosystem , 2008, Nature.

[30]  Nancy Knowlton,et al.  Baselines and Degradation of Coral Reefs in the Northern Line Islands , 2008, PloS one.

[31]  Florent E. Angly,et al.  Microbial Ecology of Four Coral Atolls in the Northern Line Islands , 2008, PloS one.

[32]  Byung Hong Kim,et al.  Bacterial Physiology and Metabolism: Contents , 2008 .

[33]  Carrie V. Kappel,et al.  A Global Map of Human Impact on Marine Ecosystems , 2008, Science.

[34]  Byung Hong Kim,et al.  Bacterial Physiology and Metabolism: Contents , 2008 .

[35]  D. Bellwood,et al.  Phase Shifts, Herbivory, and the Resilience of Coral Reefs to Climate Change , 2007, Current Biology.

[36]  F. Rohwer,et al.  Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality. , 2006, Ecology letters.

[37]  Nancy Knowlton,et al.  Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality , 2006 .

[38]  F. Rohwer,et al.  Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species , 2005 .

[39]  Jun Yu,et al.  VFDB: a reference database for bacterial virulence factors , 2004, Nucleic Acids Res..

[40]  Celiam . Smith,et al.  A Rapid Ecological Assessment (REA) Quantitative Survey Method for Benthic Algae Using Photoquadrats with Scuba , 2004 .

[41]  Markus Huettel,et al.  Coral mucus functions as an energy carrier and particle trap in the reef ecosystem , 2004, Nature.

[42]  E. Peltzer,et al.  Final dissolved organic carbon broad community intercalibration and preliminary use of DOC reference materials , 2002 .

[43]  K. Bjorndal,et al.  Historical Overfishing and the Recent Collapse of Coastal Ecosystems , 2001, Science.

[44]  L. McCook,et al.  Competition between corals and algae on coral reefs: a review of evidence and mechanisms , 2001, Coral Reefs.

[45]  C. Folke,et al.  Coral reef disturbance and resilience in a human-dominated environment. , 2000, Trends in ecology & evolution.

[46]  J. Burkholder,et al.  Emerging marine diseases--climate links and anthropogenic factors. , 1999, Science.

[47]  R. Coma,et al.  Benthic suspension feeders: their paramount role in littoral marine food webs. , 1998, Trends in ecology & evolution.

[48]  T. Conway,et al.  Evolution of carbohydrate metabolic pathways. , 1996, Research in microbiology.

[49]  G. Sprenger.  Genetics of pentose-phosphate pathway enzymes ofEscherichia coli K-12 , 1995, Archives of Microbiology.

[50]  A. Geller.  Comparison of mechanisms enhancing biodegradability of refractory lake water constituents1 , 1986 .

[51]  O. Hankinson.  Mutants of the Pentose Phosphate Pathway in Aspergillus nidulans , 1974, Journal of bacteriology.

[52]  S. Doney,et al.  Will ocean acidification affect marine microbes? , 2011, The ISME Journal.

[53]  P. Vroom.  “Coral Dominance”: A Dangerous Ecosystem Misnomer? , 2011 .

[54]  Lin Yan-ling.  Microbial Carbon Pump in the Ocean——from Microbial EcologicalProcess to Carbon Cycle Mechanism , 2011 .

[55]  S. Schuster,et al.  Game-theoretical approaches to studying the evolution of biochemical systems. , 2005, Trends in biochemical sciences.

[56]  Dennis A. Hansell,et al.  Biogeochemistry of marine dissolved organic matter , 2002 .

[57]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[58]  Jonathan J. Cole,et al.  Respiration rates in bacteria exceed phytoplankton production in unproductive aquatic systems , 1997, Nature.

[59]  Å. Hagström,et al.  Consumption of dissolved organic carbon by marine bacteria and demand for inorganic nutrients , 1993 .

[60]  Peter R. Nelson,et al.  The Analysis of Means: A Graphical Method for Comparing Means, Rates, and Proportions , 1987 .

[61]  K. Hellingwerf,et al.  Thermodynamic efficiency of microbial growth is low but optimal for maximal growth rate. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[62]  John S. Burlew,et al.  Algal culture from laboratory to pilot plant. , 1953 .