title 1 AI and HTP for GWAS and TWAS of WUE in sorghum 2 3 Corresponding

[1]  E. M. Meyerowitz,et al.  Arabidopsis thaliana , 2022, CABI Compendium.

[2]  Doina Caragea,et al.  Classical Phenotyping and Deep Learning Concur on Genetic Control of Stomatal Density and Area in Sorghum. , 2021, Plant physiology.

[3]  Samuel B. Fernandes,et al.  Comparative evolutionary genetics of deleterious load in sorghum and maize , 2021, Nature Plants.

[4]  Lai Wei Selection On synonymous Mutations Revealed by 1135 Genomes of Arabidopsis thaliana , 2020, Evolutionary bioinformatics online.

[5]  T. Lawson,et al.  Guard Cell Metabolism and Stomatal Function. , 2020, Annual review of plant biology.

[6]  A. Rasmusson,et al.  Efficient Photosynthetic Functioning of Arabidopsis thaliana Through Electron Dissipation in Chloroplasts and Electron Export to Mitochondria Under Ammonium Nutrition , 2020, Frontiers in Plant Science.

[7]  D. Bergmann,et al.  Stomatal development in the grasses: lessons from models and crops (and crop models). , 2020, The New phytologist.

[8]  Hernández-Castellano Sara,et al.  Agave angustifolia albino plantlets lose stomatal physiology function by changing the development of the stomatal complex due to a molecular disruption , 2020, Molecular Genetics and Genomics.

[9]  S. Long,et al.  Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines. , 2019, Journal of experimental botany.

[10]  Elizabeth A. Ainsworth,et al.  Genetic strategies for improving crop yields , 2019, Nature.

[11]  M. Sabuncu,et al.  Machine Learning Enables High-Throughput Phenotyping for Analyses of the Genetic Architecture of Bulliform Cell Patterning in Maize , 2019, G3: Genes, Genomes, Genetics.

[12]  A. Leakey,et al.  Uncovering hidden genetic variation in photosynthesis of field‐grown maize under ozone pollution , 2019, Global change biology.

[13]  N. Zoulias,et al.  HY5 is not integral to light mediated stomatal development in Arabidopsis , 2019, bioRxiv.

[14]  Atul K. Jain,et al.  Increased atmospheric vapor pressure deficit reduces global vegetation growth , 2019, Science Advances.

[15]  Huiwen Ren,et al.  The SMO1 Family of Sterol 4α-Methyl Oxidases Is Essential for Auxin- and Cytokinin-Regulated Embryogenesis1[OPEN] , 2019, Plant Physiology.

[16]  R. Kassen,et al.  The distribution of fitness effects among synonymous mutations in a gene under directional selection , 2019, eLife.

[17]  Samuel B. Fernandes,et al.  Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum , 2019, G3: Genes, Genomes, Genetics.

[18]  L. Sweetlove,et al.  Leaf Energy Balance Requires Mitochondrial Respiration and Export of Chloroplast NADPH in the Light , 2019, Plant Physiology.

[19]  John T. Lovell,et al.  QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient , 2019, Proceedings of the National Academy of Sciences.

[20]  A. Fleming,et al.  Reduced stomatal density in bread wheat leads to increased water-use efficiency , 2019, Journal of experimental botany.

[21]  K. Guan,et al.  Are we approaching a water ceiling to maize yields in the United States? , 2019, Ecosphere.

[22]  J. Atkinson,et al.  Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation , 2019, Scientific Reports.

[23]  J. Gray,et al.  Impact of Stomatal Density and Morphology on Water-Use Efficiency in a Changing World , 2019, Front. Plant Sci..

[24]  J. Hatfield,et al.  Water-Use Efficiency: Advances and Challenges in a Changing Climate , 2019, Front. Plant Sci..

[25]  Samuel B. Fernandes,et al.  Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor) , 2019, Genetics.

[26]  K. L. Le Roch,et al.  The Arabidopsis RRM domain protein EDM3 mediates race‐specific disease resistance by controlling H3K9me2‐dependent alternative polyadenylation of RPP7 immune receptor transcripts , 2018, The Plant journal : for cell and molecular biology.

[27]  A. Walter,et al.  Genetic determination of stomatal patterning in winter wheat (Triticum aestivum L.) , 2018 .

[28]  Arun Prabhu Dhanapal,et al.  Identification of genomic loci associated with 21chlorophyll fluorescence phenotypes by genome-wide association analysis in soybean , 2018, BMC Plant Biology.

[29]  D. Ravetta,et al.  Relationship between photosynthetic rate, water use and leaf structure in desert annual and perennial forbs differing in their growth , 2018, Photosynthetica.

[30]  Junyi Yin,et al.  Genome-Wide Association Studies of Photosynthetic Traits Related to Phosphorus Efficiency in Soybean , 2018, Front. Plant Sci..

[31]  D. Gibbs,et al.  Distinct branches of the N-end rule pathway modulate the plant immune response. , 2018, The New phytologist.

[32]  Anindya Bandyopadhyay,et al.  Rice with reduced stomatal density conserves water and has improved drought tolerance under future climate conditions , 2018, The New phytologist.

[33]  A. Weber,et al.  Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana , 2018, bioRxiv.

[34]  M. Gore,et al.  Transcriptome-Wide Association Supplements Genome-Wide Association in Zea mays , 2018, G3: Genes, Genomes, Genetics.

[35]  Jessica K. Chang,et al.  Direct Control of SPEECHLESS by PIF4 in the High-Temperature Response of Stomatal Development , 2018, Current Biology.

[36]  D. Bergmann,et al.  Conservation and divergence of YODA MAPKKK function in regulation of grass epidermal patterning , 2018, Development.

[37]  D. Chitwood,et al.  Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype , 2018, Front. Plant Sci..

[38]  H. Tsukaya,et al.  Palisade cell shape affects the light-induced chloroplast movements and leaf photosynthesis , 2018, Scientific Reports.

[39]  Samuel B. Fernandes,et al.  Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum , 2017, Theoretical and Applied Genetics.

[40]  K. Lindsey,et al.  Epidermal expression of a sterol biosynthesis gene regulates root growth by a non-cell-autonomous mechanism in Arabidopsis , 2017, Development.

[41]  H. Janska,et al.  AtOMA1 Affects the OXPHOS System and Plant Growth in Contrast to Other Newly Identified ATP-Independent Proteases in Arabidopsis Mitochondria , 2017, Front. Plant Sci..

[42]  J. Kiniry,et al.  Performance evaluation of biomass sorghum in Hawaii and Texas , 2017 .

[43]  F. Tardieu,et al.  Root Water Uptake and Ideotypes of the Root System: Whole‐Plant Controls Matter , 2017 .

[44]  J. Berry,et al.  Disruption of stomatal lineage signaling or transcriptional regulators has differential effects on mesophyll development, but maintains coordination of gas exchange , 2017, The New phytologist.

[45]  Xin-Guang Zhu,et al.  Leaf Photosynthetic Parameters Related to Biomass Accumulation in a Global Rice Diversity Survey1[OPEN] , 2017, Plant Physiology.

[46]  Diego Ortiz,et al.  Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions , 2017, Journal of experimental botany.

[47]  William M. Putman,et al.  The Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2). , 2017, Journal of climate.

[48]  Darren M. Wells,et al.  Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies , 2017, bioRxiv.

[49]  T. Zhu,et al.  The asparagine-rich protein NRP interacts with the Verticillium effector PevD1 and regulates the subcellular localization of cryptochrome 2 , 2017, Journal of experimental botany.

[50]  A. Aharoni,et al.  Corrigendum: Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism , 2017, Nature Plants.

[51]  V. Tonapi,et al.  Sweet sorghum as biofuel feedstock: recent advances and available resources , 2017, Biotechnology for Biofuels.

[52]  B. Lacombe,et al.  Substrate (un)specificity of Arabidopsis NRT1/PTR FAMILY (NPF) proteins , 2017, Journal of experimental botany.

[53]  Anke Jentsch,et al.  Effects of extreme drought on specific leaf area of grassland species: A meta‐analysis of experimental studies in temperate and sub‐Mediterranean systems , 2017, Global change biology.

[54]  Zhou Du,et al.  agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update , 2017, Nucleic Acids Res..

[55]  Robbie Waugh,et al.  Reducing Stomatal Density in Barley Improves Drought Tolerance without Impacting on Yield1[CC-BY] , 2017, Plant Physiology.

[56]  J. Berry,et al.  Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata , 2017, Science.

[57]  Ryan F. McCormick,et al.  Bioenergy Sorghum Crop Model Predicts VPD-Limited Transpiration Traits Enhance Biomass Yield in Water-Limited Environments , 2017, Front. Plant Sci..

[58]  Yanhao Feng,et al.  Does greater specific leaf area plasticity help plants to maintain a high performance when shaded? , 2016, Annals of botany.

[59]  Jian‐Kang Zhu,et al.  Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development , 2016, Development.

[60]  I. Ślesak,et al.  Mitogen activated protein kinase 4 (MPK4) influences growth in Populus tremula L. × tremuloides☆ , 2016 .

[61]  A. Schmitt,et al.  The response of sub‐Mediterranean grasslands to rainfall variation is influenced by early season precipitation , 2016 .

[62]  T. Luo,et al.  Optimal balance of water use efficiency and leaf construction cost with a link to the drought threshold of the desert steppe ecotone in northern China. , 2016, Annals of Botany.

[63]  Giorgio Matteucci,et al.  Investigating the European beech (Fagus sylvatica L.) leaf characteristics along the vertical canopy profile: leaf structure, photosynthetic capacity, light energy dissipation and photoprotection mechanisms. , 2016, Tree physiology.

[64]  C. Stokes,et al.  Sugarcane for water-limited environments: enhanced capability of the APSIM sugarcane model for assessing traits for transpiration efficiency and root water supply , 2016 .

[65]  Michael J. Aspinwall,et al.  QTL and Drought Effects on Leaf Physiology in Lowland Panicum virgatum , 2016, BioEnergy Research.

[66]  J. Gray,et al.  Balancing Water Uptake and Loss through the Coordinated Regulation of Stomatal and Root Development , 2016, PloS one.

[67]  W. Yin,et al.  PdEPF1 regulates water-use efficiency and drought tolerance by modulating stomatal density in poplar. , 2016, Plant biotechnology journal.

[68]  A. Ding,et al.  Expansins: roles in plant growth and potential applications in crop improvement , 2016, Plant Cell Reports.

[69]  J. Flexas,et al.  Harpin Hpa1 Interacts with Aquaporin PIP1;4 to Promote the Substrate Transport and Photosynthesis in Arabidopsis , 2015, Scientific Reports.

[70]  Bin Zhang,et al.  Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation[OPEN] , 2015, Plant Cell.

[71]  Miranda J. Haus,et al.  Application of Optical Topometry to Analysis of the Plant Epidermis1 , 2015, Plant Physiology.

[72]  A. T. Bruzi,et al.  Agronomic and energetic potential of biomass sorghum genotypes. , 2015 .

[73]  J. Cornelissen,et al.  Integrated plant phenotypic responses to contrasting above- and below-ground resources: key roles of specific leaf area and root mass fraction. , 2015, The New phytologist.

[74]  A. Millar,et al.  INTERMEDIATE CLEAVAGE PEPTIDASE55 Modifies Enzyme Amino Termini and Alters Protein Stability in Arabidopsis Mitochondria1[OPEN] , 2015, Plant Physiology.

[75]  Hui Zhang,et al.  Mechanisms for the relationships between water-use efficiency and carbon isotope composition and specific leaf area of maize (Zea mays L.) under water stress , 2015, Plant Growth Regulation.

[76]  Yixing Han,et al.  Advanced Applications of RNA Sequencing and Challenges , 2015, Bioinformatics and biology insights.

[77]  Carson C Chow,et al.  Second-generation PLINK: rising to the challenge of larger and richer datasets , 2014, GigaScience.

[78]  B. Senthilkumaran,et al.  Physiological role of AOX1a in photosynthesis and maintenance of cellular redox homeostasis under high light in Arabidopsis thaliana. , 2014, Plant physiology and biochemistry : PPB.

[79]  G. Bonaventure,et al.  Arabidopsis AtHB7 and AtHB12 evolved divergently to fine tune processes associated with growth and responses to water stress , 2014, BMC Plant Biology.

[80]  Stephen D. Turner,et al.  qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots , 2014, bioRxiv.

[81]  Y. Chao,et al.  Disruption of the Homogentisate Solanesyltransferase Gene Results in Albino and Dwarf Phenotypes and Root, Trichome and Stomata Defects in Arabidopsis thaliana , 2014, PloS one.

[82]  G. Jenkins,et al.  Ultraviolet-B-Induced Stomatal Closure in Arabidopsis Is Regulated by the UV RESISTANCE LOCUS8 Photoreceptor in a Nitric Oxide-Dependent Mechanism1[C][W] , 2014, Plant Physiology.

[83]  Michael C. Dietze,et al.  Ecophysiological screening of tree species for biomass production: trade-off between production and water use. , 2013 .

[84]  Ellen I. Damschen,et al.  Intra-specific and inter-specific variation in specific leaf area reveal the importance of abiotic and biotic drivers of species diversity across elevation and latitude , 2013 .

[85]  M. Movahedi Identifying stomatal signalling genes to improve plant water use effeciency , 2013 .

[86]  Siqi Tian,et al.  The glutamate carboxypeptidase AMP1 mediates abscisic acid and abiotic stress responses in Arabidopsis. , 2013, The New phytologist.

[87]  Xuncheng Liu,et al.  PHYTOCHROME INTERACTING FACTOR3 Associates with the Histone Deacetylase HDA15 in Repression of Chlorophyll Biosynthesis and Photosynthesis in Etiolated Arabidopsis Seedlings[W][OA] , 2013, Plant Cell.

[88]  C. Roumet,et al.  Tradeoffs between functional strategies for resource-use and drought-survival in Mediterranean rangeland species , 2013 .

[89]  A. Menzel,et al.  Phenological response of grassland species to manipulative snowmelt and drought along an altitudinal gradient , 2012, Journal of experimental botany.

[90]  Heribert Hirt,et al.  Constitutively Active Mitogen-Activated Protein Kinase Versions Reveal Functions of Arabidopsis MPK4 in Pathogen Defense Signaling[C][W] , 2012, Plant Cell.

[91]  W. Kim,et al.  Roles of Four Arabidopsis U-Box E3 Ubiquitin Ligases in Negative Regulation of Abscisic Acid-Mediated Drought Stress Responses1[C][W][OA] , 2012, Plant Physiology.

[92]  Erin T. Hamanishi,et al.  Drought induces alterations in the stomatal development program in Populus , 2012, Journal of experimental botany.

[93]  M. Aluru,et al.  PDS activity acts as a rheostat of retrograde signaling during early chloroplast biogenesis , 2010, Plant signaling & behavior.

[94]  Ü. Niinemets,et al.  Leaf Functional Anatomy in Relation to Photosynthesis1 , 2010, Plant Physiology.

[95]  S. Thomine,et al.  The Arabidopsis vacuolar anion transporter, AtCLCc, is involved in the regulation of stomatal movements and contributes to salt tolerance. , 2010, The Plant journal : for cell and molecular biology.

[96]  R. Furbank,et al.  Growth of the C4 dicot Flaveria bidentis: photosynthetic acclimation to low light through shifts in leaf anatomy and biochemistry , 2010, Journal of experimental botany.

[97]  P. Ingvarsson Natural selection on synonymous and nonsynonymous mutations shapes patterns of polymorphism in Populus tremula. , 2010, Molecular biology and evolution.

[98]  Stuart A Casson,et al.  Environmental regulation of stomatal development. , 2010, Current opinion in plant biology.

[99]  J. Schroeder Faculty Opinions recommendation of Cryptochromes, phytochromes, and COP1 regulate light-controlled stomatal development in Arabidopsis. , 2009 .

[100]  Zhang Congzhi,et al.  Relationships among water use efficiency, carbon isotope discrimination, and specific leaf area in maize. , 2009 .

[101]  David J. Beerling,et al.  Maximum leaf conductance driven by CO2 effects on stomatal size and density over geologic time , 2009, Proceedings of the National Academy of Sciences.

[102]  Stuart A. Casson,et al.  phytochrome B and PIF4 Regulate Stomatal Development in Response to Light Quantity , 2009, Current Biology.

[103]  Guangsheng Zhou,et al.  Responses of leaf stomatal density to water status and its relationship with photosynthesis in a grass , 2008, Journal of experimental botany.

[104]  K. Torii,et al.  The bHLH protein, MUTE, controls differentiation of stomata and the hydathode pore in Arabidopsis. , 2008, Plant & cell physiology.

[105]  E. Wood,et al.  Projected changes in drought occurrence under future global warming from multi-model, multi-scenario, IPCC AR4 simulations , 2008 .

[106]  F. Myouga,et al.  CRR23/NdhL is a subunit of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. , 2008, Plant & cell physiology.

[107]  P. Mullineaux,et al.  Improving water use in crop production , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[108]  Daniel B. Sloan,et al.  Termination of asymmetric cell division and differentiation of stomata , 2007, Nature.

[109]  J. Flexas,et al.  Water relations and stomatal characteristics of Mediterranean plants with different growth forms and leaf habits: responses to water stress and recovery , 2007, Plant and Soil.

[110]  K. Homma,et al.  Genotypic Variation of Stomatal Conductance in Relation to Stomatal Density and Length in Rice (Oryza sativa L.) , 2007 .

[111]  Brian R. Cullis,et al.  On the design of early generation variety trials with correlated data , 2006 .

[112]  S. Rood,et al.  Stomatal characteristics of riparian poplar species in a semi-arid environment. , 2006, Tree physiology.

[113]  A. Rogers,et al.  Photosynthesis, Productivity, and Yield of Maize Are Not Affected by Open-Air Elevation of CO2 Concentration in the Absence of Drought1[OA] , 2006, Plant Physiology.

[114]  G. Hammer,et al.  Potential yield and water-use efficiency benefits in sorghum from limited maximum transpiration rate. , 2005, Functional plant biology : FPB.

[115]  K. Hikosaka,et al.  Leaf anatomy as a constraint for photosynthetic acclimation: differential responses in leaf anatomy to increasing growth irradiance among three deciduous trees , 2005 .

[116]  H. Lambers,et al.  Variation in relative growth rate of 20 Aegilops species (Poaceae) in the field: The importance of net assimilation rate or specific leaf area depends on the time scale , 2005, Plant and Soil.

[117]  Navin Ramankutty,et al.  Geographic distribution of major crops across the world , 2004 .

[118]  David D. Ackerly,et al.  FUNCTIONAL STRATEGIES OF CHAPARRAL SHRUBS IN RELATION TO SEASONAL WATER DEFICIT AND DISTURBANCE , 2004 .

[119]  F. Woodward,et al.  The role of stomata in sensing and driving environmental change , 2003, Nature.

[120]  N. Crawford,et al.  The Nitrate Transporter AtNRT1.1 (CHL1) Functions in Stomatal Opening and Contributes to Drought Susceptibility in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.006312. , 2003, The Plant Cell Online.

[121]  S. Gabriel,et al.  The Structure of Haplotype Blocks in the Human Genome , 2002, Science.

[122]  John R. Evans,et al.  Photosynthetic acclimation of plants to growth irradiance: the relative importance of specific leaf area and nitrogen partitioning in maximizing carbon gain , 2001 .

[123]  P. Reich,et al.  Strategy shifts in leaf physiology, structure and nutrient content between species of high‐ and low‐rainfall and high‐ and low‐nutrient habitats , 2001 .

[124]  G. Farquhar,et al.  The effect of exogenous abscisic acid on stomatal development, stomatal mechanics, and leaf gas exchange in Tradescantia virginiana. , 2001, Plant physiology.

[125]  F. Woodward,et al.  The HIC signalling pathway links CO2 perception to stomatal development , 2000, Nature.

[126]  P. Rundel,et al.  Plant Physiological Ecology: Field Methods and Instrumentation , 1990 .

[127]  N. Sakurai,et al.  Irreversible Effects of Water Stress on Growth and Stomatal Development in Cotyledons of Etiolated Squash Seedlings , 1986 .

[128]  A. Travis,et al.  Selection and Preparation of Leaf Epidermis for Experiments on Stomatal Physiology , 1981 .

[129]  H. Jones,et al.  Effects of Abscisic Acid and Water Stress on Development and Morphology of Wheat , 1977 .

[130]  S. Kim,et al.  Arabidopsis putative MAP kinase kinase kinases Raf10 and Raf11 are positive regulators of seed dormancy and ABA response. , 2015, Plant & cell physiology.

[131]  M. A. Pimenta,et al.  Stomatal changes induced by intermittent drought in four umbu tree genotypes , 2009 .

[132]  E. Prats,et al.  Interaction-Specific Stomatal Responses to Pathogenic Challenge , 2007 .

[133]  J. Ehleringer Plant physiological ecology: Field methods and instrumentation , 2004, Plant Growth Regulation.

[134]  F. Stuart Chapin,et al.  Integrated Responses of Plants to Stress , 1991 .

[135]  V. Anderson,et al.  Stomatal distribution, density and conductance of three perennial grasses native to the southern true prairie of Texas. , 1990 .

[136]  I. R. Cowan,et al.  Stomatal function in relation to leaf metabolism and environment. , 1977, Symposia of the Society for Experimental Biology.