Can DFT methods correctly and efficiently predict the coordination number of copper(I) complexes? A case study
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Tamar Ansbacher | Hemant Kumar Srivastava | Jan M. L. Martin | Avital Shurki | H. K. Srivastava | Jan M. L. Martin | A. Shurki | T. Ansbacher | Avital Shurki
[1] W. R. Wadt,et al. Ab initio effective core potentials for molecular calculations. Potentials for K to Au including the outermost core orbitals , 1985 .
[2] Amir Karton,et al. Benchmark study of DFT functionals for late-transition-metal reactions. , 2006, The journal of physical chemistry. A.
[3] Manuela Merchán,et al. Density matrix averaged atomic natural orbital (ANO) basis sets for correlated molecular wave functions , 1995 .
[4] Stefan Grimme,et al. Accurate description of van der Waals complexes by density functional theory including empirical corrections , 2004, J. Comput. Chem..
[5] N. Lehnert,et al. Structural and electronic differences of copper(I) complexes with tris(pyrazolyl)methane and hydrotris(pyrazolyl)borate ligands. , 2006, Inorganic chemistry.
[6] Jingping Zhang,et al. Optical properties of the phosphorescent trinuclear copper(I) complexes of pyrazolates: insights from theory. , 2007, The journal of physical chemistry. A.
[7] Jean-Philippe Blaudeau,et al. Extension of Gaussian-2 (G2) theory to molecules containing third-row atoms K and Ca , 1995 .
[8] Analysis of the bonding in XH3Cu+ (XB, Al, Ga) complexes , 2006 .
[9] I. Bertini,et al. Solution Structure of the Yeast Copper Transporter Domain Ccc2a in the Apo and Cu(I)-loaded States* , 2001, The Journal of Biological Chemistry.
[10] Wei Wu,et al. Ferromagnetic bonding: high spin copper clusters (n+1)Cu(n); n = 2-14) devoid of electron pairs but possessing strong bonding. , 2006, The journal of physical chemistry. A.
[11] Angela K. Wilson,et al. Gaussian basis sets for use in correlated molecular calculations. IX. The atoms gallium through krypton , 1993 .
[12] S. Packman,et al. Isolation of a candidate gene for Menkes disease and evidence that it encodes a copper–transporting ATPase , 1993, Nature Genetics.
[13] E. Tshuva,et al. Synthesis and X‐ray Characterization of Mono‐ and Polynuclear Thiolatocopper(I) Complexes: The Effect of Steric Bulk on Coordination Number and Nuclearity , 2007 .
[14] D. Truhlar,et al. The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals , 2008 .
[15] J. K. Bera,et al. Is copper(I) hard or soft? A density functional study of mixed ligand complexes , 2007 .
[16] D. Huffman,et al. Function, structure, and mechanism of intracellular copper trafficking proteins. , 2001, Annual review of biochemistry.
[17] Jan M.L. Martin,et al. Correlation consistent valence basis sets for use with the Stuttgart–Dresden–Bonn relativistic effective core potentials: The atoms Ga–Kr and In–Xe , 2001 .
[18] K. Peterson,et al. Basis set limit electronic excitation energies, ionization potentials, and electron affinities for the 3d transition metal atoms: Coupled cluster and multireference methods. , 2006, The Journal of chemical physics.
[19] M. Alcamí,et al. Cu+ binding energies. Dramatic failure of the G2 method vs. good performance of the B3LYP approach , 2000 .
[20] J. Tomasi,et al. Electrostatic interaction of a solute with a continuum. A direct utilizaion of AB initio molecular potentials for the prevision of solvent effects , 1981 .
[21] Shin Lin,et al. Metal ion chaperone function of the soluble Cu(I) receptor Atx1. , 1997, Science.
[22] V. Barone,et al. Toward reliable density functional methods without adjustable parameters: The PBE0 model , 1999 .
[23] Thomas A. Halgren,et al. The representation of van der Waals (vdW) interactions in molecular mechanics force fields: potential form, combination rules, and vdW parameters , 1992 .
[24] M. Olmstead,et al. Asymmetric dinuclear copper(I) complexes of bis-(2-(2-pyridyl)ethyl)-2-(N-toluenesulfonylamino)ethylamine with short copper-copper distances. , 2007, Dalton transactions.
[25] M. Yáñez,et al. Agostic vs π-interactions in complexes of ethynylsilanes and ethynylgermanes with Cu+ in the gas phase , 2003 .
[26] M. Yáñez,et al. Binding energies of Cu+ to saturated and α,β-unsaturated alkanes, silanes and germanes , 2003 .
[27] Jie Zhou,et al. Theoretical insights of copper(I)–nitrene complexes , 2007 .
[28] Michael Dolg,et al. Relativistic and correlation effects for element 105 (hahnium, Ha): a comparative study of M and MO (M = Nb, Ta, Ha) using energy-adjusted ab initio pseudopotentials , 1993 .
[29] M. Yáñez,et al. Cu+ association to some Ph–X (X = OH, NH2, CHO, COOH, CF3) phenyl derivatives.: A comparison with Li+ complexes , 2006 .
[30] D. Truhlar,et al. A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions. , 2006, The Journal of chemical physics.
[31] Otilia Mó,et al. MODELING THE INTERACTIONS BETWEEN PEPTIDE FUNCTIONS AND CU(I) : FORMAMIDE-CU+ REACTIONS IN THE GAS PHASE , 1998 .
[32] Frank Jensen,et al. Polarization consistent basis sets. III. The importance of diffuse functions , 2002 .
[33] S. Lutsenko,et al. X-ray Absorption Spectroscopy of the Copper Chaperone HAH1 Reveals a Linear Two-coordinate Cu(I) Center Capable of Adduct Formation with Exogenous Thiols and Phosphines* , 2003, Journal of Biological Chemistry.
[34] Mark A. Ratner,et al. 6‐31G* basis set for third‐row atoms , 2001, J. Comput. Chem..
[35] H. Cohen,et al. A computational foray into the formation and reactivity of metallabenzenes. , 2004, Journal of the American Chemical Society.
[36] Johannes Grotendorst,et al. Modern methods and algorithms of quantum chemistry , 2000 .
[37] A. Wernimont,et al. Structural basis for copper transfer by the metallochaperone for the Menkes/Wilson disease proteins , 2000, Nature Structural Biology.
[38] T. Helgaker,et al. Polarization consistent basis sets. V. The elements Si-Cl. , 2004, The Journal of chemical physics.
[39] W. R. Wadt,et al. Ab initio effective core potentials for molecular calculations. Potentials for main group elements Na to Bi , 1985 .
[40] Burke,et al. Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.
[41] George C Schatz,et al. Highly accurate first-principles benchmark data sets for the parametrization and validation of density functional and other approximate methods. Derivation of a robust, generally applicable, double-hybrid functional for thermochemistry and thermochemical kinetics. , 2008, The journal of physical chemistry. A.
[42] S. Dalosto. Computer simulation of the interaction of Cu(I) with cys residues at the binding site of the yeast metallochaperone Cu(I)-Atx1. , 2007, The journal of physical chemistry. B.
[43] Petros Koumoutsakos,et al. Dispersion corrections to density functionals for water aromatic interactions. , 2004, The Journal of chemical physics.
[44] Frank Jensen,et al. Polarization consistent basis sets: Principles , 2001 .
[45] T. H. Dunning. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen , 1989 .
[46] Samuel A. Delp,et al. Chemistry surrounding monomeric copper(I) methyl, phenyl, anilido, ethoxide, and phenoxide complexes supported by N-heterocyclic carbene ligands: reactivity consistent with both early and late transition metal systems. , 2006, Inorganic chemistry.
[47] V. Percec,et al. A density functional theory computational study of the role of ligand on the stability of CuI and CuII species associated with ATRP and SET‐LRP , 2007 .
[48] Saroj K. Nayak,et al. Towards extending the applicability of density functional theory to weakly bound systems , 2001 .
[49] T. Dunning,et al. Electron affinities of the first‐row atoms revisited. Systematic basis sets and wave functions , 1992 .
[50] Richard L Martin,et al. Revised Basis Sets for the LANL Effective Core Potentials. , 2008, Journal of chemical theory and computation.
[51] Kirk A Peterson,et al. Systematically convergent basis sets for transition metals. I. All-electron correlation consistent basis sets for the 3d elements Sc-Zn. , 2005, The Journal of chemical physics.
[52] A. Wachters,et al. Gaussian Basis Set for Molecular Wavefunctions Containing Third‐Row Atoms , 1970 .
[53] Timothy Clark,et al. Efficient diffuse function‐augmented basis sets for anion calculations. III. The 3‐21+G basis set for first‐row elements, Li–F , 1983 .
[54] Donald G Truhlar,et al. Density functionals with broad applicability in chemistry. , 2008, Accounts of chemical research.
[55] J. Pople,et al. Self‐consistent molecular orbital methods. XX. A basis set for correlated wave functions , 1980 .
[56] F. Jensen. Polarization consistent basis sets. IV. The basis set convergence of equilibrium geometries, harmonic vibrational frequencies, and intensities , 2003 .
[57] M. Yáñez,et al. Reactions of Urea with Cu+ in the Gas Phase: An Experimental and Theoretical Study , 2000 .
[58] Stefan Grimme,et al. Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..
[59] Thomas V. O'Halloran,et al. Metallochaperones, an Intracellular Shuttle Service for Metal Ions* , 2000, The Journal of Biological Chemistry.
[60] J. Haines,et al. Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis , 1993, Nature.
[61] S. Alvarez,et al. Choice of coordination number in d10 complexes of group 11 metals. , 2004, Journal of the American Chemical Society.
[62] C. Bauschlicher,et al. Theoretical studies of the first- and second-row transition-metal methyls and their positive ions , 1989 .
[63] S. F. Boys,et al. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .
[64] M. Millar,et al. Steric control of metal-thiolate coordination: synthesis and structure of monomeric cobalt(II) and copper(I) thiolate complexes , 1984 .
[65] D. Truhlar,et al. Obtaining the right orbitals is the first step to calculating accurate binding energies for Cu + ion , 2002 .
[66] Frank Jensen,et al. Polarization consistent basis sets. II. Estimating the Kohn-Sham basis set limit , 2002 .
[67] M. Sodupe,et al. Hydrogen bonding and aromaticity in the guanine–cytosine base pair interacting with metal cations (M = Cu+, Ca2+ and Cu2+) , 2005 .
[68] G. Ohanessian,et al. Complexation of small organic molecules by Cu , 1997 .
[69] J. Bertrán,et al. The Different Nature of Bonding in Cu+-Glycine and Cu2+-Glycine , 1999 .
[70] Per-Olof Widmark,et al. Density matrix averaged atomic natural orbital (ANO) basis sets for correlated molecular wave functions , 1990 .
[71] Gernot Frenking,et al. A set of f-polarization functions for pseudo-potential basis sets of the transition metals ScCu, YAg and LaAu , 1993 .
[72] Qin Wu,et al. Empirical correction to density functional theory for van der Waals interactions , 2002 .
[73] Donald G Truhlar,et al. Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions. , 2006, Journal of chemical theory and computation.
[74] Gilles Ohanessian,et al. Absolute Affinities of α-Amino Acids for Cu+ in the Gas Phase. A Theoretical Study , 1997 .
[75] E. Davidson,et al. Theoretical investigation of electronic structure and ESR hyperfine parameters for the CuH+ molecule , 2000 .
[76] A. Rosenzweig,et al. Copper delivery by metallochaperone proteins. , 2001, Accounts of chemical research.
[77] Li Dang,et al. DFT Studies of Alkene Insertions into Cu−B Bonds in Copper(I) Boryl Complexes , 2007 .
[78] P. Pulay,et al. An improved 6-31G* basis set for first-row transition metals , 2003 .
[79] J. Rommens,et al. The Wilson disease gene is a putative copper transporting P–type ATPase similar to the Menkes gene , 1993, Nature Genetics.
[80] Valérie Brenner,et al. New model potentials for sulfur–copper(I) and sulfur–mercury(II) interactions in proteins: From ab initio to molecular dynamics , 2006, J. Comput. Chem..
[81] Qingxi Meng,et al. Theoretical insights of copper(I) carbenes , 2006 .
[82] Albert Rimola,et al. Cation-π interactions and oxidative effects on Cu+ and Cu2+ binding to Phe, Tyr, Trp, and his amino acids in the gas phase. Insights from first-principles calculations , 2006 .