Proteogenomic analysis of the total and surface-exposed Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites. proteomes of Plasmodium vivax salivary gland sporozoites.

Plasmodium falciparum and Plasmodium vivax cause the majority of human malaria cases. Research efforts predominantly focus on P . falciparum because of the clinical severity of infection and associated mortality rates. However, P . vivax malaria affects more people in a wider global range. Furthermore, unlike P . falciparum , P . vivax can persist in the liver as dormant hypnozoites that can be activated weeks to years after primary infection, causing relapse of symptomatic blood stages. This feature makes P . vivax unique and difficult to eliminate with the standard tools of vector control and treatment of symptomatic blood stage infection with antimalarial drugs. Infection by Plasmodium is initiated

[1]  D. Coulter Relapse. , 2020, The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry.

[2]  Satish Mishra,et al.  A Novel and Conserved Plasmodium Sporozoite Membrane Protein SPELD is Required for Maturation of Exo-erythrocytic Forms , 2017, Scientific Reports.

[3]  N. Waters,et al.  Rationale for Further Development of a Vaccine Based on the Circumsporozoite Protein of Plasmodium vivax , 2017, PLoS neglected tropical diseases.

[4]  R. Tewari,et al.  An Apicomplexan Actin-Binding Protein Serves as a Connector and Lipid Sensor to Coordinate Motility and Invasion. , 2016, Cell host & microbe.

[5]  R. Price,et al.  A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes , 2016, Wellcome open research.

[6]  Vasant G Honavar,et al.  PlasmoSEP: Predicting surface-exposed proteins on the malaria parasite using semisupervised self-training and expert-annotated data , 2016, Proteomics.

[7]  T. Richie,et al.  Protective Efficacy of Plasmodium vivax Radiation-Attenuated Sporozoites in Colombian Volunteers: A Randomized Controlled Trial , 2016, PLoS neglected tropical diseases.

[8]  Luis Mendoza,et al.  Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics , 2015, Proteomics. Clinical applications.

[9]  M. Grainger,et al.  Extensive differential protein phosphorylation as intraerythrocytic Plasmodium falciparum schizonts develop into extracellular invasive merozoites , 2015, Proteomics.

[10]  Sandra Gesing,et al.  VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases , 2014, Nucleic Acids Res..

[11]  S. Kappe,et al.  SSP3 Is a Novel Plasmodium yoelii Sporozoite Surface Protein with a Role in Gliding Motility , 2014, Infection and Immunity.

[12]  T. Springer,et al.  Structures of the Toxoplasma gliding motility adhesin , 2014, Proceedings of the National Academy of Sciences.

[13]  Kristian E. Swearingen,et al.  Total and Putative Surface Proteomics of Malaria Parasite Salivary Gland Sporozoites* , 2013, Molecular & Cellular Proteomics.

[14]  J. Eng,et al.  Comet: An open‐source MS/MS sequence database search tool , 2013, Proteomics.

[15]  S. Ralph,et al.  Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum , 2012, Genome Biology.

[16]  Richard D. Smith,et al.  Normalization and missing value imputation for label-free LC-MS analysis , 2012, BMC Bioinformatics.

[17]  R. Price,et al.  Primaquine radical cure of Plasmodium vivax: a critical review of the literature , 2012, Malaria Journal.

[18]  Michael B. Doud,et al.  Unexpected fold in the circumsporozoite protein target of malaria vaccines , 2012, Proceedings of the National Academy of Sciences.

[19]  L. Aravind,et al.  Structure of the Plasmodium 6-cysteine s48/45 domain , 2012, Proceedings of the National Academy of Sciences.

[20]  N. Waters,et al.  Targeting protein kinases in the malaria parasite: update of an antimalarial drug target. , 2012, Current topics in medicinal chemistry.

[21]  F. Frischknecht,et al.  Critical Role for Heat Shock Protein 20 (HSP20) in Migration of Malarial Sporozoites* , 2011, The Journal of Biological Chemistry.

[22]  A. Tobin,et al.  Global kinomic and phospho-proteomic analyses of the human malaria parasite Plasmodium falciparum. , 2011, Nature communications.

[23]  Joshua E Elias,et al.  The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries. , 2011, Cell host & microbe.

[24]  Jetsumon Sattabongkot,et al.  Determination of the Plasmodium vivax schizont stage proteome. , 2011, Journal of proteomics.

[25]  C. Ockenhouse,et al.  The RTS,S vaccine candidate for malaria , 2011, Expert review of vaccines.

[26]  Teun Bousema,et al.  Epidemiology and Infectivity of Plasmodium falciparum and Plasmodium vivax Gametocytes in Relation to Malaria Control and Elimination , 2011, Clinical Microbiology Reviews.

[27]  A. Nesvizhskii,et al.  Abacus: A computational tool for extracting and pre‐processing spectral count data for label‐free quantitative proteomic analysis , 2011, Proteomics.

[28]  Hyung-Hwan Kim,et al.  Molecular cloning and expression of the VK247 circumsporozoite protein for serodiagnosis of variant form Plasmodium vivax , 2011, Parasitology Research.

[29]  Benjamin F. Cravatt,et al.  Global Profiling of Proteolysis during Rupture of Plasmodium falciparum from the Host Erythrocyte , 2010, Molecular & Cellular Proteomics.

[30]  Edwin Lasonder,et al.  Protein Export Marks the Early Phase of Gametocytogenesis of the Human Malaria Parasite Plasmodium falciparum* , 2010, Molecular & Cellular Proteomics.

[31]  Yi Zhang,et al.  Cell Surface Relocalization of the Endoplasmic Reticulum Chaperone and Unfolded Protein Response Regulator GRP78/BiP* , 2010, The Journal of Biological Chemistry.

[32]  A. Sicard,et al.  Malaria: targeting parasite and host cell kinomes. , 2010, Biochimica et biophysica acta.

[33]  M. Washburn,et al.  Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. , 2010, Analytical chemistry.

[34]  R. Price,et al.  New developments in Plasmodium vivax malaria: severe disease and the rise of chloroquine resistance , 2009, Current opinion in infectious diseases.

[35]  Lauren W. Wang,et al.  Post-translational Modification of Thrombospondin Type-1 Repeats in ADAMTS-like 1/Punctin-1 by C-Mannosylation of Tryptophan* , 2009, The Journal of Biological Chemistry.

[36]  K. Miura,et al.  Functional Analysis of the Leading Malaria Vaccine Candidate AMA-1 Reveals an Essential Role for the Cytoplasmic Domain in the Invasion Process , 2009, PLoS pathogens.

[37]  Martijn A. Huynen,et al.  Proteomic Profiling of Plasmodium Sporozoite Maturation Identifies New Proteins Essential for Parasite Development and Infectivity , 2008, PLoS pathogens.

[38]  Pier Luigi Martelli,et al.  PredGPI: a GPI-anchor predictor , 2008, BMC Bioinformatics.

[39]  K. Julenius NetCGlyc 1.0: prediction of mammalian C-mannosylation sites. , 2007, Glycobiology.

[40]  L. Meijer,et al.  Antimalarial drug discovery: targeting protein kinases , 2007, Expert opinion on therapeutic targets.

[41]  H. Ishida,et al.  Molecular cloning and characterization of a novel human beta1,3-glucosyltransferase, which is localized at the endoplasmic reticulum and glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domain. , 2006, Glycobiology.

[42]  John R Yates,et al.  A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses , 2005, Science.

[43]  John R Yates,et al.  Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes. , 2004, Molecular and biochemical parasitology.

[44]  Patricia De la Vega,et al.  Discovery of Gene Function by Expression Profiling of the Malaria Parasite Life Cycle , 2003, Science.

[45]  R. Aebersold,et al.  A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.

[46]  David L. Tabb,et al.  A proteomic view of the Plasmodium falciparum life cycle , 2002, Nature.

[47]  Alexey I Nesvizhskii,et al.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.

[48]  B. Maček,et al.  C-Mannosylation and O-Fucosylation of the Thrombospondin Type 1 Module* , 2001, The Journal of Biological Chemistry.

[49]  S. Hoffman,et al.  Pre-erythrocytic-stage immune effector mechanisms in Plasmodium spp. infections. , 1997, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[50]  J F Vliegenthart,et al.  New type of linkage between a carbohydrate and a protein: C-glycosylation of a specific tryptophan residue in human RNase Us. , 1994, Biochemistry.

[51]  J. V. Staros,et al.  N-hydroxysulfosuccinimide active esters: bis(N-hydroxysulfosuccinimide) esters of two dicarboxylic acids are hydrophilic, membrane-impermeant, protein cross-linkers. , 1982, Biochemistry.

[52]  K. Garcia,et al.  Structural biology. Structural basis for Notch1 engagement of Delta-like 4. , 2015, Science.

[53]  Darren Kessner,et al.  Bioinformatics Applications Note Proteowizard: Open Source Software for Rapid Proteomics Tools Development , 2022 .