USAGE OPTIMIZATION OF UNEVENLY SAMPLED DATA THROUGH THE COMBINATION OF QUARTET TREES: A EUTHERIAN DRAFT PHYLOGENY BASED ON 640 NUCLEAR AND MITOCHONDRIAL PROTEINS
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[1] N. Okada,et al. Molecular evidence from retroposons that whales form a clade within even-toed ungulates , 1997, Nature.
[2] A. Janke,et al. Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and Ferungulates. , 1997, Molecular biology and evolution.
[3] Michael M. Miyamoto,et al. Molecular and Morphological Supertrees for Eutherian (Placental) Mammals , 2001, Science.
[4] W. C. Barker,et al. The PIR-International Protein Sequence Database. , 1998, Nucleic acids research.
[5] D Graur,et al. Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata. , 1997, Molecular phylogenetics and evolution.
[6] J. Schmitz,et al. The complete mitochondrial genome of Tupaia belangeri and the phylogenetic affiliation of scandentia to other eutherian orders. , 2000, Molecular biology and evolution.
[7] William R. Taylor,et al. The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..
[8] Manolo Gouy,et al. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny , 1996, Comput. Appl. Biosci..
[9] D. Higgins,et al. Molecular evidence for the inclusion of cetaceans within the order Artiodactyla. , 1994, Molecular biology and evolution.
[10] M. Miyamoto,et al. Support for interordinal eutherian relationships with an emphasis on primates and their archontan relatives. , 1996, Molecular phylogenetics and evolution.
[11] W. W. Jong. Molecules remodel the mammalian tree , 1998 .
[12] Diana J. Kao,et al. Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[13] J. Shoshani,et al. Higher taxonomic relationships among extant mammals based on morphology, with selected comparisons of results from molecular data. , 1998, Molecular phylogenetics and evolution.
[14] E. Douzery,et al. Molecular evolution of the nuclear von Willebrand factor gene in mammals and the phylogeny of rodents. , 1999, Molecular biology and evolution.
[15] M. Novacek,et al. Mammalian phytogeny: shaking the tree , 1992, Nature.
[16] D. Mouchiroud,et al. Nuclear gene LCAT supports rodent monophyly. , 2000, Molecular biology and evolution.
[17] N Okada,et al. Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[18] Dan Pelleg,et al. Constructing Phylogenies from Quartets: Elucidation of Eutherian Superordinal Relationships , 1998, J. Comput. Biol..
[19] C. Gissi,et al. The complete mitochondrial DNA sequence of the rabbit, Oryctolagus cuniculus. , 1998, Genomics.
[20] M. Stanhope,et al. Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition. , 1999, Systematic biology.
[21] Laurent Duret,et al. Phylogenetic position of the order Lagomorpha (rabbits, hares and allies) , 1996, Nature.
[22] A. Janke,et al. The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the Phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea). , 1996, Molecular biology and evolution.
[23] M. Gouy,et al. HOVERGEN: a database of homologous vertebrate genes. , 1994, Nucleic acids research.
[24] M Hasegawa,et al. Instability of quartet analyses of molecular sequence data by the maximum likelihood method: the Cetacea/Artiodactyla relationships. , 1996, Molecular phylogenetics and evolution.
[25] W. Luckett,et al. Evolutionary Relationships among Rodents: Comments and Conclusions , 1985 .
[26] S. O’Brien,et al. Molecular phylogenetics and the origins of placental mammals , 2001, Nature.
[27] Dan Graur,et al. Is the guinea-pig a rodent? , 1991, Nature.
[28] C. Gissi,et al. The guinea-pig is not a rodent , 1996, Nature.
[29] O Gascuel,et al. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. , 1997, Molecular biology and evolution.
[30] K. Strimmer,et al. Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies , 1996 .
[31] George Gaylord Simpson,et al. Classification of mammals : above the species level , 1997 .
[32] Diana J. Kao,et al. Parallel adaptive radiations in two major clades of placental mammals , 2001, Nature.
[33] Heather M. Amrine,et al. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. , 2001, Molecular biology and evolution.
[34] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[35] P J Waddell,et al. Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant. , 1999, Systematic biology.