Reprogramming of the Circadian Clock by Nutritional Challenge

Circadian rhythms and cellular metabolism are intimately linked. Here, we reveal that a high-fat diet (HFD) generates a profound reorganization of specific metabolic pathways, leading to widespread remodeling of the liver clock. Strikingly, in addition to disrupting the normal circadian cycle, HFD causes an unexpectedly large-scale genesis of de novo oscillating transcripts, resulting in reorganization of the coordinated oscillations between coherent transcripts and metabolites. The mechanisms underlying this reprogramming involve both the impairment of CLOCK:BMAL1 chromatin recruitment and a pronounced cyclic activation of surrogate pathways through the transcriptional regulator PPARγ. Finally, we demonstrate that it is specifically the nutritional challenge, and not the development of obesity, that causes the reprogramming of the clock and that the effects of the diet on the clock are reversible.

[1]  Dmitri A. Nusinow,et al.  Cryptochrome Mediates Circadian Regulation of cAMP Signaling and Hepatic Gluconeogenesis , 2010, Nature Medicine.

[2]  Fred W. Turek,et al.  Obesity and Metabolic Syndrome in Circadian Clock Mutant Mice , 2005, Science.

[3]  M. Bray,et al.  The role of cell‐specific circadian clocks in metabolism and disease , 2009, Obesity reviews : an official journal of the International Association for the Study of Obesity.

[4]  Steven A. Brown,et al.  The human circadian metabolome , 2012, Proceedings of the National Academy of Sciences.

[5]  Pierre Baldi,et al.  CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics , 2012, Nature Methods.

[6]  Paolo Sassone-Corsi,et al.  A Web of Circadian Pacemakers , 2002, Cell.

[7]  Steven P Gygi,et al.  Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1. , 2005, Nature.

[8]  Xiaohui Xie,et al.  MotifMap: a human genome-wide map of candidate regulatory motif sites , 2009, Bioinform..

[9]  F. Gonzalez,et al.  Hepatic steatosis in leptin-deficient mice is promoted by the PPARgamma target gene Fsp27. , 2008, Cell metabolism.

[10]  Felix Naef,et al.  Cold-Inducible RNA-Binding Protein Modulates Circadian Gene Expression Posttranscriptionally , 2012, Science.

[11]  C. Johnson,et al.  Circadian Disruption Leads to Insulin Resistance and Obesity , 2013, Current Biology.

[12]  Karl Kornacker,et al.  JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets , 2010, Journal of biological rhythms.

[13]  C. Drake,et al.  Shift work sleep disorder: prevalence and consequences beyond that of symptomatic day workers. , 2004, Sleep.

[14]  A. A. Rao,et al.  Gene expression profile in obesity and type 2 diabetes mellitus , 2007, Lipids in Health and Disease.

[15]  Kai-Florian Storch,et al.  Physiological significance of a peripheral tissue circadian clock , 2008, Proceedings of the National Academy of Sciences.

[16]  Y Sakaki,et al.  Entrainment of the circadian clock in the liver by feeding. , 2001, Science.

[17]  G. Bollag,et al.  Modulation of nutrient sensing nuclear hormone receptors promotes weight loss through appetite suppression in mice , 2010, Diabetes, obesity & metabolism.

[18]  Satchidananda Panda,et al.  Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. , 2012, Cell metabolism.

[19]  Omid Aminian,et al.  Shift work as an oxidative stressor , 2005, Journal of circadian rhythms.

[20]  J. Takahashi,et al.  cAMP-Dependent Signaling as a Core Component of the Mammalian Circadian Pacemaker , 2008, Science.

[21]  Peter Tontonoz,et al.  Fat and beyond: the diverse biology of PPARgamma. , 2008, Annual review of biochemistry.

[22]  L. Lyons,et al.  Cycling Behavior and Memory Formation , 2009, The Journal of Neuroscience.

[23]  Francisco Tirado,et al.  GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information , 2009, Nucleic Acids Res..

[24]  F. Turek,et al.  Circadian Timing of Food Intake Contributes to Weight Gain , 2009, Obesity.

[25]  M. Antoch,et al.  Early aging and age-related pathologies in mice deficient in BMAL1, the core componentof the circadian clock. , 2006, Genes & development.

[26]  K. Petersen,et al.  Targeting Pyruvate Carboxylase Reduces Gluconeogenesis and Adiposity and Improves Insulin Resistance , 2013, Diabetes.

[27]  G. Tsujimoto,et al.  Salt-sensitive hypertension in circadian clock–deficient Cry-null mice involves dysregulated adrenal Hsd3b6 , 2010, Nature Medicine.

[28]  S. Panda,et al.  Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression , 2009, Proceedings of the National Academy of Sciences.

[29]  B. Spiegelman PPAR-gamma: adipogenic regulator and thiazolidinedione receptor. , 1998, Diabetes.

[30]  M. Rosbash,et al.  When brain clocks lose track of time: cause or consequence of neuropsychiatric disorders , 2011, Current Opinion in Neurobiology.

[31]  Pierre Baldi,et al.  Coordination of the transcriptome and metabolome by the circadian clock , 2012, Proceedings of the National Academy of Sciences.

[32]  M. Lazar,et al.  Clocks, metabolism, and the epigenome. , 2012, Molecular cell.

[33]  T. Okumura,et al.  Increased expression of PPARgamma in high fat diet-induced liver steatosis in mice. , 2005, Biochemical and biophysical research communications.

[34]  Paolo Sassone-Corsi,et al.  The histone methyltransferase MLL1 permits the oscillation of circadian gene expression , 2010, Nature Structural &Molecular Biology.

[35]  K. Ellacott,et al.  High‐fat diet acutely affects circadian organisation and eating behavior , 2013, The European journal of neuroscience.

[36]  Satchidananda Panda,et al.  Harmonics of Circadian Gene Transcription in Mammals , 2009, PLoS genetics.

[37]  Randy J. Nelson,et al.  Light at night increases body mass by shifting the time of food intake , 2010, Proceedings of the National Academy of Sciences.

[38]  A. Knutsson,et al.  Health disorders of shift workers. , 2003, Occupational medicine.

[39]  C N Boozer,et al.  Dietary obesity in nine inbred mouse strains. , 1992, The American journal of physiology.

[40]  T. Okumura,et al.  Increased expression of PPARγ in high fat diet-induced liver steatosis in mice , 2005 .

[41]  H. Ueda,et al.  Human blood metabolite timetable indicates internal body time , 2012, Proceedings of the National Academy of Sciences.

[42]  C. Weitz,et al.  An intrinsic circadian clock of the pancreas is required for normal insulin release and glucose homeostasis in mice , 2010, Diabetologia.

[43]  U. Schibler,et al.  The mammalian circadian timing system: organization and coordination of central and peripheral clocks. , 2010, Annual review of physiology.

[44]  J. Takahashi,et al.  Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals , 2012, Science.

[45]  J. Auwerx,et al.  PPAR gamma: an essential role in metabolic control. , 2001, Nutrition, metabolism, and cardiovascular diseases : NMCD.

[46]  F. Fleury-Olela,et al.  Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus. , 2000, Genes & development.

[47]  Corey D. DeHaven,et al.  Integrated, nontargeted ultrahigh performance liquid chromatography/electrospray ionization tandem mass spectrometry platform for the identification and relative quantification of the small-molecule complement of biological systems. , 2009, Analytical chemistry.

[48]  S. Imai,et al.  Nicotinamide mononucleotide, a key NAD(+) intermediate, treats the pathophysiology of diet- and age-induced diabetes in mice. , 2011, Cell metabolism.

[49]  P. Sassone-Corsi,et al.  Circadian Control of the NAD+ Salvage Pathway by CLOCK-SIRT1 , 2009, Science.

[50]  C. Ackert-Bicknell,et al.  A circadian-regulated gene, Nocturnin, promotes adipogenesis by stimulating PPAR-γ nuclear translocation , 2010, Proceedings of the National Academy of Sciences.

[51]  Joseph S. Takahashi,et al.  Disruption of the Clock Components CLOCK and BMAL1 Leads to Hypoinsulinemia and Diabetes , 2010, Nature.

[52]  B. Spiegelman,et al.  Regulation of PPAR gamma gene expression by nutrition and obesity in rodents. , 1996, The Journal of clinical investigation.

[53]  B. Sos,et al.  Abrogation of growth hormone secretion rescues fatty liver in mice with hepatocyte-specific deletion of JAK2. , 2011, The Journal of clinical investigation.

[54]  Pierre Baldi,et al.  Circadian acetylome reveals regulation of mitochondrial metabolic pathways , 2013, Proceedings of the National Academy of Sciences.

[55]  J. Takahashi,et al.  Circadian Clock Feedback Cycle Through NAMPT-Mediated NAD+ Biosynthesis , 2009, Science.

[56]  Kathryn Moynihan Ramsey,et al.  High-fat diet disrupts behavioral and molecular circadian rhythms in mice. , 2007, Cell metabolism.

[57]  Joseph Fogerty,et al.  Loss of Nocturnin, a circadian deadenylase, confers resistance to hepatic steatosis and diet-induced obesity , 2007, Proceedings of the National Academy of Sciences.

[58]  A. B. Reddy,et al.  Two Decades of Circadian Time , 2008, Journal of neuroendocrinology.

[59]  Xinran Liu,et al.  Competing E3 Ubiquitin Ligases Govern Circadian Periodicity by Degradation of CRY in Nucleus and Cytoplasm , 2013, Cell.

[60]  Satchidananda Panda,et al.  BMAL1 and CLOCK, Two Essential Components of the Circadian Clock, Are Involved in Glucose Homeostasis , 2004, PLoS biology.

[61]  J. Wallace,et al.  Anaplerotic roles of pyruvate carboxylase in mammalian tissues , 2006, Cellular and Molecular Life Sciences CMLS.

[62]  Ke Ma,et al.  Loss of Bmal1 leads to uncoupling and impaired glucose-stimulated insulin secretion in β-cells , 2011, Islets.

[63]  J. Takahashi,et al.  Molecular components of the mammalian circadian clock. , 2006, Human molecular genetics.

[64]  Andrew J. Millar,et al.  Circadian rhythms persist without transcription in a eukaryote , 2010, Nature.

[65]  T. Willson,et al.  Functional consequences of cysteine modification in the ligand binding sites of peroxisome proliferator activated receptors by GW9662. , 2002, Biochemistry.

[66]  M. Antoch,et al.  BMAL1-dependent circadian oscillation of nuclear CLOCK: posttranslational events induced by dimerization of transcriptional activators of the mammalian clock system. , 2003, Genes & development.

[67]  M. Nishimura,et al.  Analysis of N-glycan in serum glycoproteins from db/db mice and humans with type 2 diabetes. , 2007, American journal of physiology. Endocrinology and metabolism.

[68]  Paolo Sassone-Corsi,et al.  Regulation of metabolism: the circadian clock dictates the time , 2012, Trends in Endocrinology & Metabolism.

[69]  T. Kido,et al.  A Longitudinal Study on the Effect of Shift Work on Weight Gain in Male Japanese Workers , 2008, Obesity.

[70]  Oren Froy,et al.  Metabolism and circadian rhythms--implications for obesity. , 2010, Endocrine reviews.

[71]  Ueli Schibler,et al.  Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions , 2006, Nature Genetics.

[72]  J. Bass,et al.  Circadian topology of metabolism , 2012, Nature.

[73]  J. Carazo,et al.  GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists , 2007, Genome Biology.

[74]  H. Aburatani,et al.  Genome-Wide Profiling of the Core Clock Protein BMAL1 Targets Reveals a Strict Relationship with Metabolism , 2010, Neuroscience Research.

[75]  Xiaohui Xie,et al.  MotifMap: integrative genome-wide maps of regulatory motif sites for model species , 2011, BMC Bioinformatics.

[76]  M. Hidalgo,et al.  Correlation of shift work and waist circumference, body mass index, chronotype and depressive symptoms. , 2010, Arquivos brasileiros de endocrinologia e metabologia.

[77]  Felix Naef,et al.  Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver , 2011, PLoS biology.