Functional Analysis of the Yeast Glc7-Binding Protein Reg1 Identifies a Protein Phosphatase Type 1-Binding Motif as Essential for Repression of ADH2 Expression

ABSTRACT In Saccharomyces cerevisiae, the protein phosphatase type 1 (PP1)-binding protein Reg1 is required to maintain complete repression of ADH2 expression during growth on glucose. Surprisingly, however, mutant forms of the yeast PP1 homologue Glc7, which are unable to repress expression of another glucose-regulated gene, SUC2, fully repressed ADH2. ConstitutiveADH2 expression in reg1 mutant cells did require Snf1 protein kinase activity like constitutive SUC2expression and was inhibited by unregulated cyclic AMP-dependent protein kinase activity like ADH2 expression in derepressed cells. To further elucidate the functional role of Reg1 in repressingADH2 expression, deletions scanning the entire length of the protein were analyzed. Only the central region of the protein containing the putative PP1-binding sequence RHIHF was found to be indispensable for repression. Introduction of the I466M F468A substitutions into this sequence rendered Reg1 almost nonfunctional. Deletion of the central region or the double substitution prevented Reg1 from significantly interacting with Glc7 in two-hybrid analyses. Previous experimental evidence had indicated that Reg1 might target Glc7 to nuclear substrates such as the Snf1 kinase complex. Subcellular localization of a fully functional Reg1-green fluorescent protein fusion, however, indicated that Reg1 is cytoplasmic and excluded from the nucleus independently of the carbon source. When the level of Adr1 was modestly elevated, ADH2 expression was no longer fully repressed in glc7 mutant cells, providing the first direct evidence that Glc7 can repress ADH2 expression. These results suggest that the Reg1-Glc7 phosphatase is a cytoplasmic component of the machinery responsible for returning Snf1 kinase activity to its basal level and reestablishing glucose repression. This implies that the activated form of the Snf1 kinase complex must cycle between the nucleus and the cytoplasm.

[1]  Thomas J. White,et al.  PCR protocols: a guide to methods and applications. , 1990 .

[2]  P. Cohen The structure and regulation of protein phosphatases. , 1989, Annual review of biochemistry.

[3]  S. Shenolikar,et al.  Protein serine/threonine phosphatases--new avenues for cell regulation. , 1994, Annual review of cell biology.

[4]  M. Carlson,et al.  Glucose regulates protein interactions within the yeast SNF1 protein kinase complex. , 1996, Genes & development.

[5]  M. Ciriacy,et al.  A positive regulatory gene is required for accumulation of the functional messenger RNA for the glucose-repressible alcohol dehydrogenase from Saccharomyces cerevisiae. , 1981, Journal of molecular biology.

[6]  M. Carlson,et al.  Glucose-regulated interaction of a regulatory subunit of protein phosphatase 1 with the Snf1 protein kinase in Saccharomyces cerevisiae. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[7]  M. Carlson,et al.  A family of proteins containing a conserved domain that mediates interaction with the yeast SNF1 protein kinase complex. , 1994, The EMBO journal.

[8]  S Falkow,et al.  FACS-optimized mutants of the green fluorescent protein (GFP). , 1996, Gene.

[9]  M. Carlson,et al.  The Snf1 protein kinase and its activating subunit, Snf4, interact with distinct domains of the Sip1/Sip2/Gal83 component in the kinase complex , 1997, Molecular and cellular biology.

[10]  S. Liebman,et al.  The yeast translational allosuppressor, SAL6: a new member of the PP1-like phosphatase family with a long serine-rich N-terminal extension. , 1994, Genetics.

[11]  Philip R. Cohen,et al.  Structural basis for the recognition of regulatory subunits by the catalytic subunit of protein phosphatase 1 , 1997, The EMBO journal.

[12]  J. Gancedo Yeast Carbon Catabolite Repression , 1998, Microbiology and Molecular Biology Reviews.

[13]  P. Roach,et al.  Interactions between cAMP-dependent and SNF1 protein kinases in the control of glycogen accumulation in Saccharomyces cerevisiae. , 1994, The Journal of biological chemistry.

[14]  A. Bloecher,et al.  Alanine-scanning mutagenesis of protein phosphatase type 1 in the yeast Saccharomyces cerevisiae. , 1997, Genetics.

[15]  F. Sherman Getting started with yeast. , 1991, Methods in enzymology.

[16]  D. Botstein,et al.  Mutants of yeast defective in sucrose utilization. , 1981, Genetics.

[17]  M. Goebl,et al.  Genetic interactions between REG1/HEX2 and GLC7, the gene encoding the protein phosphatase type 1 catalytic subunit in Saccharomyces cerevisiae. , 1996, Genetics.

[18]  R. Khesin,et al.  Molecular Genetics , 1968, Springer Berlin Heidelberg.

[19]  Janina Maier,et al.  Guide to yeast genetics and molecular biology. , 1991, Methods in enzymology.

[20]  M. Carlson,et al.  Snf1 Protein Kinase Regulates Phosphorylation of the Mig1 Repressor in Saccharomyces cerevisiae , 1998, Molecular and Cellular Biology.

[21]  R. Verwilghen,et al.  Quantitation of proteins solubilized in sodium dodecyl sulfate-mercaptoethanol-Tris electrophoresis buffer. , 1979, Analytical biochemistry.

[22]  E. F. da Cruz e Silva,et al.  Protein phosphatase 2Bw and protein phosphatase Z are Saccharomyces cerevisiae enzymes. , 1991, Biochimica et biophysica acta.

[23]  M. Carlson,et al.  Cloning and genetic mapping of SNF1, a gene required for expression of glucose-repressible genes in Saccharomyces cerevisiae , 1984, Molecular and cellular biology.

[24]  K. Matsumoto,et al.  The EGP1 gene may be a positive regulator of protein phosphatase type 1 in the growth control of Saccharomyces cerevisiae , 1995, Molecular and cellular biology.

[25]  K. Matsumoto,et al.  Recessive mutations conferring resistance to carbon catabolite repression of galactokinase synthesis in Saccharomyces cerevisiae , 1983, Journal of bacteriology.

[26]  E. Krebs,et al.  Consensus sequences as substrate specificity determinants for protein kinases and protein phosphatases. , 1991, The Journal of biological chemistry.

[27]  M. Stark,et al.  The Saccharomyces cerevisiae gene SDS22 encodes a potential regulator of the mitotic function of yeast type 1 protein phosphatase , 1995, Molecular and cellular biology.

[28]  J. Yu,et al.  ADR1-mediated regulation of ADH2 requires an inverted repeat sequence , 1986, Molecular and cellular biology.

[29]  M. Bollen,et al.  The structure, role, and regulation of type 1 protein phosphatases. , 1992, Critical reviews in biochemistry and molecular biology.

[30]  K. Tatchell,et al.  The REG2 gene of Saccharomyces cerevisiae encodes a type 1 protein phosphatase-binding protein that functions with Reg1p and the Snf1 protein kinase to regulate growth , 1996, Molecular and cellular biology.

[31]  M. Carlson,et al.  REG1 binds to protein phosphatase type 1 and regulates glucose repression in Saccharomyces cerevisiae. , 1995, The EMBO journal.

[32]  T. Davis,et al.  Calmodulin localizes to the spindle pole body of Schizosaccharomyces pombe and performs an essential function in chromosome segregation. , 1997, Journal of cell science.

[33]  K. Entian,et al.  Characterization of Hex2 protein, a negative regulatory element necessary for glucose repression in yeast. , 1991, European journal of biochemistry.

[34]  B. Kemp,et al.  ADR1c mutations enhance the ability of ADR1 to activate transcription by a mechanism that is independent of effects on cyclic AMP-dependent protein kinase phosphorylation of Ser-230 , 1992, Molecular and cellular biology.

[35]  M. Stark,et al.  Yeast Protein Serine/Threonine Phosphatases: Multiple Roles and Diverse Regulation , 1996, Yeast.

[36]  M. Chen,et al.  PPQ, a novel protein phosphatase containing a Ser + Asn-rich amino-terminal domain, is involved in the regulation of protein synthesis. , 1993, European journal of biochemistry.

[37]  K. Tatchell,et al.  The mutant type 1 protein phosphatase encoded by glc7-1 from Saccharomyces cerevisiae fails to interact productively with the GAC1-encoded regulatory subunit , 1994, Molecular and cellular biology.

[38]  M. Johnston,et al.  Regulated nuclear translocation of the Mig1 glucose repressor. , 1997, Molecular biology of the cell.

[39]  M. Carlson,et al.  Relationship of the cAMP-dependent protein kinase pathway to the SNF1 protein kinase and invertase expression in Saccharomyces cerevisiae. , 1992, Genetics.

[40]  P. Roach,et al.  Yeast PIG Genes: PIG1 Encodes a Putative Type 1 Phosphatase Subunit that Interacts with the Yeast Glycogen Synthase Gsy2p , 1997, Yeast.

[41]  M. Carlson,et al.  Molecular analysis of the SNF4 gene of Saccharomyces cerevisiae: evidence for physical association of the SNF4 protein with the SNF1 protein kinase , 1989, Molecular and cellular biology.

[42]  J. Hegemann,et al.  Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast , 1996, Yeast.

[43]  A. Willems,et al.  Studies on the transformation of intact yeast cells by the LiAc/SS‐DNA/PEG procedure , 1995, Yeast.

[44]  Yeast promoters and lacZ fusions designed to study expression of cloned genes in yeast. , 1983, Methods in enzymology.

[45]  F. Spencer,et al.  Analysis of chromosome segregation in Saccharomyces cerevisiae. , 1991, Methods in enzymology.

[46]  M. Carlson,et al.  The AMP-activated/SNF1 protein kinase subfamily: metabolic sensors of the eukaryotic cell? , 1998, Annual review of biochemistry.

[47]  M. Johnston,et al.  Regulated expression of the GAL4 activator gene in yeast provides a sensitive genetic switch for glucose repression. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[48]  R. Rothstein One-step gene disruption in yeast. , 1983, Methods in enzymology.

[49]  A. Hopper,et al.  SRN1, a yeast gene involved in RNA processing, is identical to HEX2/REG1, a negative regulator in glucose repression , 1992, Molecular and cellular biology.

[50]  R. Sternglanz,et al.  Identification of a new family of tissue-specific basic helix-loop-helix proteins with a two-hybrid system , 1995, Molecular and cellular biology.

[51]  R. Sikorski,et al.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. , 1989, Genetics.

[52]  J. Bennetzen,et al.  Isolation of the structural gene for alcohol dehydrogenase by genetic complementation in yeast , 1980, Nature.

[53]  J. François,et al.  Deletion of SNF1 affects the nutrient response of yeast and resembles mutations which activate the adenylate cyclase pathway. , 1991, Genetics.

[54]  M. Carlson,et al.  Protein phosphatase type 1 interacts with proteins required for meiosis and other cellular processes in Saccharomyces cerevisiae , 1996, Molecular and cellular biology.

[55]  M. Carlson,et al.  A yeast gene that is essential for release from glucose repression encodes a protein kinase. , 1986, Science.

[56]  M. Carlson,et al.  Mutations causing constitutive invertase synthesis in yeast: genetic interactions with snf mutations. , 1987, Genetics.

[57]  K. M. Dombek,et al.  ADH2 expression is repressed by REG1 independently of mutations that alter the phosphorylation of the yeast transcription factor ADR1 , 1993, Molecular and cellular biology.

[58]  K. M. Dombek,et al.  Cyclic AMP-dependent protein kinase inhibits ADH2 expression in part by decreasing expression of the transcription factor gene ADR1 , 1997, Molecular and cellular biology.