Structured digital tables on the Semantic Web: toward a structured digital literature

[1]  Daniel L. Rubin,et al.  Comparison of concept recognizers for building the Open Biomedical Annotator , 2009, BMC Bioinformatics.

[2]  Eric P. Xing,et al.  Structured correspondence topic models for mining captioned figures in biological literature , 2009, KDD.

[3]  David M. Shotton,et al.  Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article , 2009, PLoS Comput. Biol..

[4]  Brent R. Martin,et al.  Large-scale profiling of protein palmitoylation in mammalian cells , 2009, Nature Methods.

[5]  Pat Hanrahan,et al.  Vispedia: Interactive Visual Exploration of Wikipedia Data via Search-Based Integration , 2008, IEEE Transactions on Visualization and Computer Graphics.

[6]  Jessica A. Turner,et al.  The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience , 2008, Neuroinformatics.

[7]  Alan Ruttenberg,et al.  The SWAN biomedical discourse ontology , 2008, J. Biomed. Informatics.

[8]  Thomas S Deisboeck,et al.  Life Sciences and the web: a new era for collaboration , 2008, Molecular systems biology.

[9]  M. Ashburner,et al.  Calling on a million minds for community annotation in WikiProteins , 2008, Genome Biology.

[10]  A. Valencia,et al.  A text‐mining perspective on the requirements for electronically annotated abstracts , 2008, FEBS letters.

[11]  Yuntao Qian,et al.  Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models , 2008, Bioinform..

[12]  Lee Feigenbaum,et al.  The Semantic Web in action. , 2007, Scientific American.

[13]  M. Ashburner,et al.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration , 2007, Nature Biotechnology.

[14]  Y. T. Wang,et al.  PDZ Protein Interactions Underlying NMDA Receptor-Mediated Excitotoxicity and Neuroprotection by PSD-95 Inhibitors , 2007, The Journal of Neuroscience.

[15]  Lennart Martens,et al.  The minimum information about a proteomics experiment (MIAPE) , 2007, Nature Biotechnology.

[16]  M. Manning,et al.  The physical science behind climate change. , 2007, Scientific American.

[17]  D. Crawford.  Human reference sequence makes sense of names , 2007, Nature.

[18]  Michael R. Seringhaus,et al.  Structured digital abstract makes text mining easy , 2007, Nature.

[19]  Ross D King,et al.  An ontology of scientific experiments , 2006, Journal of The Royal Society Interface.

[20]  Benjamin M. Good,et al.  iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website , 2006, BMC Bioinformatics.

[21]  Paul T. Spellman,et al.  A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB , 2006, BMC Bioinformatics.

[22]  Kazuhito Shida,et al.  GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima , 2006, BMC Bioinformatics.

[23]  P. Imming,et al.  Drugs, their targets and the nature and number of drug targets , 2006, Nature Reviews Drug Discovery.

[24]  Christine Golbreich,et al.  The Foundational Model of Anatomy in OWL: Experience and Perspectives , 2006, OWLED.

[25]  Chris F. Taylor,et al.  Development of FuGO: an ontology for functional genomics investigations. , 2006, Omics : a journal of integrative biology.

[26]  Wolfgang Gatterbauer,et al.  Table Extraction Using Spatial Reasoning on the CSS2 Visual Box Model , 2006, AAAI.

[27]  Robert F. Murphy,et al.  A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images , 2006, BMC Bioinformatics.

[28]  P. Bork,et al.  Literature mining for the biologist: from information retrieval to biological discovery , 2006, Nature Reviews Genetics.

[29]  Jeremy J. Carroll,et al.  Named graphs , 2005, J. Web Semant..

[30]  Hao Chen,et al.  Content-rich biological network constructed by mining PubMed abstracts , 2004, BMC Bioinformatics.

[31]  Yiming Yang,et al.  Learning Table Extraction from Examples , 2004, COLING.

[32]  Perry L. Miller,et al.  Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances , 2003, J. Am. Medical Informatics Assoc..

[33]  F. Martinon,et al.  NALPs: a novel protein family involved in inflammation , 2003, Nature Reviews Molecular Cell Biology.

[34]  Jason E. Stewart,et al.  Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.

[35]  G Stix,et al.  The mice that warred. , 2001, Scientific American.

[36]  Perry L. Miller,et al.  Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System , 1998, J. Am. Medical Informatics Assoc..

[37]  J. Shaw,et al.  The Yeast Gene, MDM20, Is Necessary for Mitochondrial Inheritance and Organization of the Actin Cytoskeleton , 1997, The Journal of cell biology.

[38]  Fred Winston,et al.  Construction of a set of convenient saccharomyces cerevisiae strains that are isogenic to S288C , 1995, Yeast.

[39]  Huajun Chen,et al.  The Semantic Web , 2011, Lecture Notes in Computer Science.

[40]  The database revolution , 2007, Nature.

[41]  Kei-Hoi Cheung,et al.  Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences , 2006, AMIA.

[42]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[43]  BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm452 Data and text mining Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics , 2022 .