Computational redesign of protein-protein interaction specificity
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D. Baker | B. Stoddard | T. Kortemme | L. Joachimiak | A. Bullock | A. Schuler | D. Baker | D. Baker
[1] K. Takano. ON SOLUTION OF , 1983 .
[2] F M Richards,et al. Construction of new ligand binding sites in proteins of known structure. II. Grafting of a buried transition metal binding site into Escherichia coli thioredoxin. , 1991, Journal of molecular biology.
[3] F. Richards,et al. Construction of new ligand binding sites in proteins of known structure. I. Computer-aided modeling of sites with pre-defined geometry. , 1991, Journal of molecular biology.
[4] P. S. Kim,et al. A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. , 1993, Science.
[5] J R Desjarlais,et al. De novo design of the hydrophobic cores of proteins , 1995, Protein science : a publication of the Protein Society.
[6] H Videler,et al. Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and noncognate interactions that span the millimolar to femtomolar affinity range. , 1995, Biochemistry.
[7] Z. Otwinowski,et al. [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.
[8] S. L. Mayo,et al. De novo protein design: fully automated sequence selection. , 1997, Science.
[9] Roland L. Dunbrack,et al. Bayesian statistical analysis of protein side‐chain rotamer preferences , 1997, Protein science : a publication of the Protein Society.
[10] D. Covell,et al. Analysis of protein-protein interactions and the effects of amino acid mutations on their energetics. The importance of water molecules in the binding epitope. , 1997, Journal of molecular biology.
[11] P. S. Kim,et al. High-resolution protein design with backbone freedom. , 1998, Science.
[12] K. Sharp,et al. Calculation of HyHel10‐lysozyme binding free energy changes: Effect of ten point mutations , 1998, Proteins.
[13] R J Read,et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.
[14] A. Bogan,et al. Anatomy of hot spots in protein interfaces. , 1998, Journal of molecular biology.
[15] G. Moore,et al. Immunity proteins and their specificity for endonuclease colicins: telling right from wrong in protein–protein recognition , 1998, Molecular microbiology.
[16] D E McRee,et al. XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density. , 1999, Journal of structural biology.
[17] C R Kissinger,et al. Rapid automated molecular replacement by evolutionary search. , 1999, Acta crystallographica. Section D, Biological crystallography.
[18] T. Ko,et al. The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein. , 1999, Structure.
[19] M. Karplus,et al. Effective energy function for proteins in solution , 1999, Proteins.
[20] C. Chothia,et al. The atomic structure of protein-protein recognition sites. , 1999, Journal of molecular biology.
[21] P. Kollman,et al. Computational Alanine Scanning To Probe Protein−Protein Interactions: A Novel Approach To Evaluate Binding Free Energies , 1999 .
[22] D. Baker,et al. Native protein sequences are close to optimal for their structures. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[23] A. Pommer,et al. Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes. , 2000, Journal of molecular biology.
[24] M. Helmer-Citterich,et al. SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family. , 2000, Journal of molecular biology.
[25] David Baker,et al. Computer-based redesign of a protein folding pathway , 2001, Nature Structural Biology.
[26] B. Brannetti,et al. Distinct Binding Specificity of the Multiple PDZ Domains of INADL, a Human Protein with Homology to INAD fromDrosophila melanogaster * , 2001, The Journal of Biological Chemistry.
[27] T M Handel,et al. Review: protein design--where we were, where we are, where we're going. , 2001, Journal of structural biology.
[28] Andrew M Wollacott,et al. Virtual interaction profiles of proteins. , 2001, Journal of Molecular Biology.
[29] Salvador Ventura,et al. Conformational strain in the hydrophobic core and its implications for protein folding and design , 2002, Nature Structural Biology.
[30] Peter A. Kollman,et al. Computational alanine scanning of the 1:1 human growth hormone–receptor complex , 2002, J. Comput. Chem..
[31] V. Rybin,et al. Computer-aided design of a PDZ domain to recognize new target sequences , 2002, Nature Structural Biology.
[32] D. Baker,et al. A simple physical model for binding energy hot spots in protein–protein complexes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[33] Julia M. Shifman,et al. Modulating calmodulin binding specificity through computational protein design. , 2002, Journal of molecular biology.
[34] F. Diez-Gonzalez,et al. Selection of recently isolated colicinogenic Escherichia coli strains inhibitory to Escherichia coli O157:H7. , 2002, Journal of food protection.
[35] Patrick Aloy,et al. Interrogating protein interaction networks through structural biology , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[36] L. Serrano,et al. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. , 2002, Journal of molecular biology.
[37] Stephen L Mayo,et al. Prudent modeling of core polar residues in computational protein design. , 2003, Journal of molecular biology.
[38] D. Baker,et al. An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. , 2003, Journal of molecular biology.
[39] L. Looger,et al. Computational design of receptor and sensor proteins with novel functions , 2003, Nature.
[40] Julia M. Shifman,et al. Exploring the origins of binding specificity through the computational redesign of calmodulin , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[41] Eugene I Shakhnovich,et al. Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[42] R. Roberts,et al. In vitro assessment of the cytotoxicity of nisin, pediocin, and selected colicins on simian virus 40-transfected human colon and Vero monkey kidney cells with trypan blue staining viability assays. , 2003, Journal of food protection.
[43] D. Baker,et al. Design of a Novel Globular Protein Fold with Atomic-Level Accuracy , 2003, Science.
[44] David Baker,et al. Evaluation of Models of Electrostatic Interactions in Proteins , 2003 .
[45] P. Harbury,et al. Automated design of specificity in molecular recognition , 2003, Nature Structural Biology.