A newly discovered human alpha-globin gene.

A previously undefined transcript with significant homology to the pseudo-alpha2 region of the alpha-globin locus on human chromosome 16 was detected as part of an effort to better define the transcriptional profiles of human reticulocytes. Cloning and sequencing of that transcript (GenBank AY698022; named mu-globin) revealed an insert with a 423-nucleotide open reading frame. BLASTP and ClustalW and phylogenetic analyses of the predicted protein demonstrated a high level of homology with the avian alpha-D globin. In addition, the heme- and globin-binding amino acids of mu-globin and avian alpha-D globin are largely conserved. Using quantitative real-time polymerase chain reaction (PCR), mu-globin was detected at a level of approximately 0.1% that measured for alpha-globin in erythroid tissues. Erythroid-specific expression was detected by Northern blot analysis, and maximal expression during the erythroblast terminal differentiation was also detected. Despite this highly regulated pattern of mu-globin gene transcription, mu-globin protein was not detected by mass spectrometry. These results suggest the human genome encodes a previously unrecognized globin member of the avian alpha-D family that is transcribed in a highly regulated pattern in erythroid cells.

[1]  D J Weatherall,et al.  The thalassemia syndromes. , 2016, Texas reports on biology and medicine.

[2]  O. Griffith,et al.  Systematic recovery and analysis of full-ORF human cDNA clones. , 2004, Genome research.

[3]  T. Gorr,et al.  Hypoxia-induced Synthesis of Hemoglobin in the Crustacean Daphnia magna Is Hypoxia-inducible Factor-dependent* , 2004, Journal of Biological Chemistry.

[4]  C. Southan Has the yo‐yo stopped? An assessment of human protein‐coding gene number , 2004, Proteomics.

[5]  Terrence S. Furey,et al.  The DNA sequence and biology of human chromosome 19 , 2004, Nature.

[6]  R. Myers,et al.  An abundance of bidirectional promoters in the human genome. , 2003, Genome research.

[7]  B. Martin,et al.  Methods for on-chip protein analysis. , 2003, Analytical biochemistry.

[8]  Rodrigo Lopez,et al.  Multiple sequence alignment with the Clustal series of programs , 2003, Nucleic Acids Res..

[9]  Mark Gerstein,et al.  Defining Genes in the Genomics Era , 2003, Science.

[10]  S. Liebhaber,et al.  Regulation of α-Globin mRNA Stability , 2003 .

[11]  T. Gorr,et al.  The Primary Structure of Three Hemoglobin Chains from the Indigo Snake (Drymarchon corais erebennus, Serpentes): First Evidence for αD Chains and Two β Chain Types in Snakes , 2002, Biological chemistry.

[12]  Jeffery L. Miller,et al.  Fetal and adult hemoglobin production during adult erythropoiesis: coordinate expression correlates with cell proliferation. , 2002, Blood.

[13]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[14]  T. Somervaille Disorders of Hemoglobin: Genetics, Pathophysiology, and Clinical Management , 2001 .

[15]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[16]  E. Fung,et al.  Protein biochips for differential profiling. , 2001, Current opinion in biotechnology.

[17]  Hwan-Gue Cho,et al.  PhyloDraw: a phylogenetic tree drawing system , 2000, Bioinform..

[18]  S. Weinberger,et al.  Recent advancements in surface‐enhanced laser desorption/ionization‐time of flight‐mass spectrometry , 2000, Electrophoresis.

[19]  T. Werner,et al.  Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. , 2000, Journal of molecular biology.

[20]  J. S. Rogers,et al.  Multiple local maxima for likelihoods of phylogenetic trees: a simulation study. , 1999, Molecular biology and evolution.

[21]  O Gascuel,et al.  BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. , 1997, Molecular biology and evolution.

[22]  C. Kundrot,et al.  Structures of a hemoglobin-based blood substitute: insights into the function of allosteric proteins. , 1997, Structure.

[23]  E. Moriyama,et al.  The amino acid sequences of two alpha chains of hemoglobins from Komodo dragon Varanus komodoensis and phylogenetic relationships of amniotes. , 1996, Molecular biology and evolution.

[24]  A. Desideri,et al.  Diving behaviour and haemoglobin function: the primary structure of the alpha- and beta-chains of the sea turtle (Caretta caretta) and its functional implications. , 1996, The Biochemical journal.

[25]  M. Boguski,et al.  dbEST — database for “expressed sequence tags” , 1993, Nature Genetics.

[26]  A. Carè,et al.  Developmental switching of messenger RNA expression from the human alpha-globin cluster: fetal/adult pattern of theta-globin gene expression. , 1992, Blood.

[27]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[28]  Eugene W. Myers,et al.  Basic local alignment search tool. Journal of Molecular Biology , 1990 .

[29]  A. Wilkie,et al.  A review of the molecular genetics of the human alpha-globin gene cluster. , 1989, Blood.

[30]  H. Bunn,et al.  Cotranslational amino-terminal processing of cytosolic proteins. Cell-free expression of site-directed mutants of human hemoglobin. , 1988, The Journal of biological chemistry.

[31]  Y. Fei,et al.  Two different theta (θ) globin gene deletions observed among black newborn babies , 1988 .

[32]  J. Marks,et al.  Structure and expression of the human \[thetas]l globin gene , 1988, Nature.

[33]  M. Kozak An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs. , 1987, Nucleic acids research.

[34]  J. Clegg Can the product of the \[thetas] gene be a real globin? , 1987, Nature.

[35]  G. Braunitzer,et al.  High-altitude respiration of birds. The primary structures of the alpha D-chains of the Bar-headed Goose (Anser indicus), the Greylag Goose(Anser anser) and the Canada Goose (Branta canadensis). , 1986, Biological chemistry Hoppe-Seyler.

[36]  J. Shaw,et al.  Sequence organization and genomic complexity of primate \[thetas]1 globin gene, a novel α-globin-like gene , 1986, Nature.

[37]  C. Schmid,et al.  A previously undetected pseudogene in the human alpha globin gene cluster. , 1986, Nucleic acids research.

[38]  T. Maniatis,et al.  The structure of the human zeta-globin gene and a closely linked, nearly identical pseudogene , 1982, Cell.

[39]  L. Hood,et al.  Minor early embryonic chick hemoglobin M. Amino acid sequences of the epsilon and alpha D chains. , 1982, The Journal of biological chemistry.

[40]  H. Bunn Evolution of mammalian hemoglobin function. , 1981, Blood.

[41]  T. Maniatis,et al.  Structure and in vitro transcription of human globin genes. , 1980, Science.

[42]  Tom Maniatis,et al.  The structure of a human α-globin pseudogene and its relationship to α-globin gene duplication , 1980, Cell.

[43]  V. Ingram,et al.  Structural studies on chick embryonic hemoglobins. , 1974, The Journal of biological chemistry.

[44]  Jennifer Daub,et al.  Expressed sequence tags: medium-throughput protocols. , 2004, Methods in molecular biology.

[45]  S. Liebhaber,et al.  Regulation of alpha-globin mRNA stability. , 2003, Experimental biology and medicine.

[46]  International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome , 2001, Nature.

[47]  M Paoli,et al.  The stereochemical mechanism of the cooperative effects in hemoglobin revisited. , 1998, Annual review of biophysics and biomolecular structure.

[48]  G. Braunitzer,et al.  Hemoglobins of reptiles. The primary structure of the major and minor hemoglobin component of adult Western Painted Turtle (Chrysemys picta bellii). , 1988, Biological chemistry Hoppe-Seyler.

[49]  G. Braunitzer,et al.  High altitude respiration of birds. The primary structures of the major and minor hemoglobin component of adult European black vulture (Aegypius monachus, Aegypiinae). , 1987, Biological chemistry Hoppe-Seyler.

[50]  J. Shaw,et al.  Sequence organization and genomic complexity of primate theta 1 globin gene, a novel alpha-globin-like gene. , 1986, Nature.

[51]  T. Maniatis,et al.  The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication. , 1980, Cell.