HLA class II sequence variants influence tuberculosis risk in populations of European ancestry

[1]  Kyung-Jin Cho,et al.  Ubiquitination by March-I prevents MHC class II recycling and promotes MHC class II turnover in antigen-presenting cells , 2015, Proceedings of the National Academy of Sciences.

[2]  L. Stern,et al.  Evaluating the Role of HLA-DM in MHC Class II–Peptide Association Reactions , 2015, The Journal of Immunology.

[3]  Bjarni V. Halldórsson,et al.  Large-scale whole-genome sequencing of the Icelandic population , 2015, Nature Genetics.

[4]  J. Barrett,et al.  Susceptibility to tuberculosis is associated with variants in the ASAP1 gene encoding a regulator of dendritic cell migration , 2015, Nature Genetics.

[5]  Å. Lernmark,et al.  Cell-surface MHC density profiling reveals instability of autoimmunity-associated HLA. , 2015, The Journal of clinical investigation.

[6]  C. Delacourt,et al.  Tuberculin Skin Test Negativity Is Under Tight Genetic Control of Chromosomal Region 11p14-15 in Settings With Different Tuberculosis Endemicities , 2014, The Journal of infectious diseases.

[7]  C. Meyer,et al.  Host genetic studies in adult pulmonary tuberculosis. , 2014, Seminars in immunology.

[8]  Alessandro Sette,et al.  Antigens for CD4 and CD8 T cells in tuberculosis. , 2014, Cold Spring Harbor perspectives in medicine.

[9]  Alessandro Sette,et al.  Definition of CD4 Immunosignatures Associated with MTB , 2014, Front. Immunol..

[10]  A. Price,et al.  Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. , 2014, Human molecular genetics.

[11]  Daniel F. Gudbjartsson,et al.  Nonsense mutation in the LGR4 gene is associated with several human diseases and other traits , 2013, Nature.

[12]  Boris Lenhard,et al.  Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions , 2013, Genome research.

[13]  D. Menzies,et al.  Epidemiology of tuberculosis immunology. , 2013, Advances in experimental medicine and biology.

[14]  William Stafford Noble,et al.  Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors , 2012, Genome research.

[15]  ENCODEConsortium,et al.  An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.

[16]  Wei Jiang,et al.  On the perils of poor editing: regulation of peptide loading by HLA-DQ and H2-A molecules associated with celiac disease and type 1 diabetes , 2012, Expert Reviews in Molecular Medicine.

[17]  Lisa Helbling Chadwick,et al.  The NIH Roadmap Epigenomics Program data resource. , 2012, Epigenomics.

[18]  I. Bekeredjian-Ding,et al.  Heterozygous Carriage of a Dysfunctional Toll-like Receptor 9 Allele Affects CpG Oligonucleotide Responses in B Cells* , 2012, The Journal of Biological Chemistry.

[19]  J. Greenbaum,et al.  Dissecting Mechanisms of Immunodominance to the Common Tuberculosis Antigens ESAT-6, CFP10, Rv2031c (hspX), Rv2654c (TB7.7), and Rv1038c (EsxJ) , 2012, The Journal of Immunology.

[20]  X. Chen,et al.  Structural and Functional Studies of trans-Encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) Protein Molecule* , 2012, The Journal of Biological Chemistry.

[21]  F. Koning,et al.  Nomenclature and listing of celiac disease relevant gluten T-cell epitopes restricted by HLA-DQ molecules , 2012, Immunogenetics.

[22]  A. Hill,et al.  Human genetic susceptibility to infectious disease , 2012, Nature Reviews Genetics.

[23]  M. Newport,et al.  Common variants at 11p13 are associated with susceptibility to tuberculosis , 2012, Nature Genetics.

[24]  Tatiana A. Tatusova,et al.  NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy , 2011, Nucleic Acids Res..

[25]  Manolis Kellis,et al.  HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants , 2011, Nucleic Acids Res..

[26]  M. DePristo,et al.  A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.

[27]  Serafim Batzoglou,et al.  Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++ , 2010, PLoS Comput. Biol..

[28]  A. Morris,et al.  Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2 , 2010, Nature Genetics.

[29]  Daniel Rios,et al.  Bioinformatics Applications Note Databases and Ontologies Deriving the Consequences of Genomic Variants with the Ensembl Api and Snp Effect Predictor , 2022 .

[30]  G. E. Etokebe,et al.  Toll‐Like Receptor 2 (P631H) Mutant Impairs Membrane Internalization and is a Dominant Negative Allele , 2010, Scandinavian journal of immunology.

[31]  J. Casanova,et al.  Two loci control tuberculin skin test reactivity in an area hyperendemic for tuberculosis , 2009, The Journal of experimental medicine.

[32]  Ole A. Andreassen,et al.  The Impact of Divergence Time on the Nature of Population Structure: An Example from Iceland , 2009, PLoS genetics.

[33]  Xiaohui Xie,et al.  Identifying novel constrained elements by exploiting biased substitution patterns , 2009, Bioinform..

[34]  C. Lange,et al.  Active case finding of tuberculosis in Europe: a Tuberculosis Network European Trials Group (TBNET) survey , 2008, European Respiratory Journal.

[35]  Robert M. Plenge,et al.  Defining the Role of the MHC in Autoimmunity: A Review and Pooled Analysis , 2008, PLoS genetics.

[36]  H. Stefánsson,et al.  Genetics of gene expression and its effect on disease , 2008, Nature.

[37]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[38]  L. Rider.  The heterogeneity of juvenile myositis. , 2007, Autoimmunity reviews.

[39]  E. Lukhtanov,et al.  A novel endonuclease IV post-PCR genotyping system , 2006, Nucleic acids research.

[40]  Pardis C Sabeti,et al.  A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC , 2006, Nature Genetics.

[41]  M. Rewers,et al.  Extreme genetic risk for type 1A diabetes , 2006, Proceedings of the National Academy of Sciences.

[42]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[43]  S. Sigurðsson.  Um berklaveiki á Íslandi , 2005 .

[44]  S. Sigurdsson.  [Tuberculosis in Iceland. 1976]. , 2005, Laeknabladid.

[45]  L. Sollid.  Coeliac disease: dissecting a complex inflammatory disorder , 2002, Nature Reviews Immunology.

[46]  Tom H. Pringle,et al.  The human genome browser at UCSC. , 2002, Genome research.

[47]  F. Breedveld,et al.  HLA class II association with rheumatoid arthritis: facts and interpretations. , 2000, Human immunology.

[48]  K. Roeder,et al.  Genomic Control for Association Studies , 1999, Biometrics.

[49]  E. Thorsby,et al.  T cells from the small intestinal mucosa of a DR4, DQ7/DR4, DQ8 celiac disease patient preferentially recognize gliadin when presented by DQ8. , 1994, Human immunology.

[50]  S. P. Akpabio.  World Health Organisation , 1983, British Dental Journal.

[51]  S. Holm.  A Simple Sequentially Rejective Multiple Test Procedure , 1979 .

[52]  Comstock Gw.  Tuberculosis in twins: a re-analysis of the Prophit survey. , 1978, The American review of respiratory disease.

[53]  G. Comstock.  Tuberculosis in twins: a re-analysis of the Prophit survey. , 1978, The American review of respiratory disease.

[54]  M Juchniewicz,et al.  [Epidemiology of tuberculosis]. , 1970, Pielegniarka i polozna.

[55]  Jhpj.  Tuberculosis in Iceland , 1951 .