Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant

[1]  G. Daigger,et al.  Manual on the Causes and Control of Activated Sludge Bulking, Foaming, and Other Solids Separation Problems , 2017 .

[2]  Tong Zhang,et al.  Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. , 2014, Environmental microbiology.

[3]  Tong Zhang,et al.  Metagenomic analysis on seasonal microbial variations of activated sludge from a full-scale wastewater treatment plant over 4 years. , 2014, Environmental microbiology reports.

[4]  Tong Zhang,et al.  Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment , 2013, PloS one.

[5]  J. A. Bennett,et al.  Increased competition does not lead to increased phylogenetic overdispersion in a native grassland. , 2013, Ecology letters.

[6]  Austin G. Davis-Richardson,et al.  Interactions between specific phytoplankton and bacteria affect lake bacterial community succession. , 2013, Environmental microbiology.

[7]  F. Ibarbalz,et al.  Industrial activated sludge exhibit unique bacterial community composition at high taxonomic ranks. , 2013, Water research.

[8]  P. Hugenholtz,et al.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes , 2013, Nature Biotechnology.

[9]  J. Raes,et al.  Microbial interactions: from networks to models , 2012, Nature Reviews Microbiology.

[10]  Aaron Marc Saunders,et al.  Microbial communities involved in enhanced biological phosphorus removal from wastewater--a model system in environmental biotechnology. , 2012, Current opinion in biotechnology.

[11]  K. Yu,et al.  Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge , 2012, PloS one.

[12]  Tong Zhang,et al.  Profiling bulking and foaming bacteria in activated sludge by high throughput sequencing. , 2012, Water research.

[13]  Tong Zhang,et al.  454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants , 2011, The ISME Journal.

[14]  Fengzhu Sun,et al.  Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates , 2011, BMC Systems Biology.

[15]  Eric P. Nawrocki,et al.  An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.

[16]  Noah Fierer,et al.  Using network analysis to explore co-occurrence patterns in soil microbial communities , 2011, The ISME Journal.

[17]  Stefan Bertilsson,et al.  Coherent dynamics and association networks among lake bacterioplankton taxa , 2011, The ISME Journal.

[18]  Susan M. Huse,et al.  Defining seasonal marine microbial community dynamics , 2011, The ISME Journal.

[19]  Russell J. Davenport,et al.  Removing Noise From Pyrosequenced Amplicons , 2011, BMC Bioinformatics.

[20]  J. Parkhill,et al.  Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities , 2010, The ISME Journal.

[21]  Hee-Deung Park,et al.  Bacterial community composition and diversity of a full-scale integrated fixed-film activated sludge system as investigated by pyrosequencing. , 2010, Journal of microbiology and biotechnology.

[22]  L. Alvarez-Cohen,et al.  Bacterial community structure in geographically distributed biological wastewater treatment reactors. , 2010, Environmental science & technology.

[23]  Aaron Marc Saunders,et al.  A conceptual ecosystem model of microbial communities in enhanced biological phosphorus removal plants. , 2010, Water research.

[24]  R. Knight,et al.  Rapid denoising of pyrosequencing amplicon data: exploiting the rank-abundance distribution , 2010, Nature Methods.

[25]  W. Whitman,et al.  The ecological coherence of high bacterial taxonomic ranks , 2010, Nature Reviews Microbiology.

[26]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[27]  Susan M. Huse,et al.  Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent. , 2010, Environmental microbiology.

[28]  A. Fodor,et al.  Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing , 2008, Applied and Environmental Microbiology.

[29]  J. Losos.  Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. , 2008, Ecology letters.

[30]  Per Halkjær Nielsen,et al.  Identification and Ecophysiological Characterization of Epiphytic Protein-Hydrolyzing Saprospiraceae (“Candidatus Epiflobacter” spp.) in Activated Sludge , 2008, Applied and Environmental Microbiology.

[31]  J. Nielsen,et al.  Ecophysiology of mycolic acid-containing Actinobacteria (Mycolata) in activated sludge foams. , 2007, FEMS microbiology ecology.

[32]  P. Nielsen,et al.  In situ detection of protein-hydrolysing microorganisms in activated sludge. , 2007, FEMS microbiology ecology.

[33]  Michael Wagner,et al.  Wastewater treatment: a model system for microbial ecology. , 2006, Trends in biotechnology.

[34]  Debojyoti Dutta,et al.  Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors , 2006, Bioinform..

[35]  M E J Newman,et al.  Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[36]  S. K. Schmidt,et al.  Seasonal Changes in an Alpine Soil Bacterial Community in the Colorado Rocky Mountains , 2004, Applied and Environmental Microbiology.

[37]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[38]  Markus Schmid,et al.  Characterization of activated sludge flocs by confocal laser scanning microscopy and image analysis. , 2003, Water research.

[39]  Michael Wagner,et al.  Bacterial community composition and function in sewage treatment systems. , 2002, Current opinion in biotechnology.

[40]  K. Schleifer,et al.  Combined Molecular and Conventional Analyses of Nitrifying Bacterium Diversity in Activated Sludge: Nitrosococcus mobilis and Nitrospira-Like Bacteria as Dominant Populations , 1998, Applied and Environmental Microbiology.

[41]  Ross Ihaka,et al.  Gentleman R: R: A language for data analysis and graphics , 1996 .

[42]  J Keller,et al.  Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors , 1995, Applied and environmental microbiology.

[43]  J. Wanner.  Activated Sludge: Bulking and Foaming Control , 1994 .

[44]  J. Sugiyama,et al.  Molecular systematics of the genus Zoogloea and emendation of the genus. , 1993, International journal of systematic bacteriology.

[45]  Arun Mittal,et al.  Biological Wastewater Treatment , 2019, Practical Waste water Treatment.

[46]  Robert C. Edgar,et al.  Search and clustering orders of magnitude faster than BLAST , 2010 .

[47]  P. Nielsen,et al.  Microbial Ecology of Activated Sludge , 2010 .

[48]  D. Eikelboom.  Process Control of Activated Sludge Plants by Microscopic Investigation , 2000 .