New high-coordination lattice model for rotational isomeric state polymer chains

New methods for coarse graining polymer chains onto lattice systems have been investigated. The mapping should take place in a rather local and exact manner to retain the specific properties of the considered polymer system. First a short overview is given of the types of lattice representations of polymer chains currently available. Secondly a method based on high-coordination lattices that has proven to be successful for mapping proteins is examined and shown to be unsuitable for interdependent bond directions. Thirdly, a new high-coordination lattice model is introduced and results of single-chain simulations are shown. These results of random walk chains, non-reversal walk chains and self-avoiding walk chains agree well with the expected theoretical values.

[1]  D. H. Napper,et al.  Simulation of the self-assembly of symmetric triblock copolymers in dilute solution , 1992 .

[2]  Adam Godzik,et al.  Lattice representations of globular proteins: How good are they? , 1993, J. Comput. Chem..

[3]  J. Skolnick,et al.  Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptides , 1992 .

[4]  I. Bahar,et al.  Segmental motions of cis-polyisoprene in the bulk state : interpretation of dielectric relaxation data , 1992 .

[5]  Kurt Kremer,et al.  Statics and dynamics of polymeric melts: a numerical analysis , 1983 .

[6]  Andrzej Kolinski,et al.  On the short time dynamics of dense polymeric systems and the origin of the glass transition: A model system , 1986 .

[7]  J. Skinner Kinetic Ising model for polymer dynamics: Applications to dielectric relaxation and dynamic depolarized light scattering , 1983 .

[8]  A Kolinski,et al.  Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. I. Six-member, Greek key beta-barrel proteins. , 1990, Journal of molecular biology.

[9]  D. H. Napper,et al.  Monte Carlo simulation of the adsorption of diblock copolymers from a nonselective solvent. II: Structure of adsorbed layer , 1993 .

[10]  Eung-Gun Kim,et al.  Local chain dynamics of bulk amorphous polybutadienes: A molecular dynamics study , 1994 .

[11]  A Kolinski,et al.  Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics. , 1991, Journal of molecular biology.

[12]  Kurt Kremer,et al.  Collapse transition and crossover scaling for self-avoiding walks on the diamond lattice , 1982 .

[13]  Wolfgang Paul,et al.  A mapping of realistic onto abstract polymer models and an application to two bisphenol polycarbonates , 1994 .

[14]  D. H. Napper,et al.  Monte Carlo simulation of the adsorption of diblock copolymers from a nonselective solvent. I. Adsorption kinetics and adsorption isotherms , 1993 .

[15]  Kurt Kremer,et al.  The bond fluctuation method: a new effective algorithm for the dynamics of polymers in all spatial dimensions , 1988 .

[16]  Andrzej Kolinski,et al.  Does reptation describe the dynamics of entangled, finite length polymer systems? A model simulation , 1987 .

[17]  Robert L. Jernigan,et al.  Conformational Energies of n-Alkanes and the Random Configuration of Higher Homologs Including Polymethylene , 1966 .

[18]  B. Forrest,et al.  Generalized coordinate hybrid Monte Carlo , 1994 .

[19]  A. Godzik,et al.  A general method for the prediction of the three dimensional structure and folding pathway of globular proteins: Application to designed helical proteins , 1993 .

[20]  G. Grest,et al.  Simulations for structural and dynamic properties of dense polymer systems , 1992 .

[21]  J. Skolnick,et al.  Phenomenological theory of the dynamics of polymer melts. I. Analytic treatment of self‐diffusion , 1988 .