Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China
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Wenjun Ma | Andrew Rambaut | Louis du Plessis | Zhe Liu | Oliver G. Pybus | Tao Liu | Jing Lu | Tie Song | Nuno R. Faria | Jianpeng Xiao | John T. McCrone | Jianxiong Hu | Shisong Fang | Jayna Raghwani | N. Loman | J. Quick | M. Kraemer | O. Pybus | L. du Plessis | A. Rambaut | Tao Liu | Jianpeng Xiao | Wenjun Ma | Kui-biao Li | W. Su | Min Kang | N. Faria | J. Raghwani | S. Fang | B. Peng | L. Yi | Jiufeng Sun | V. Hill | J. McCrone | Ruilin Sun | Jianxiong Hu | T. Song | Wei Li | Juan Su | C. Ke | R. Bai | Josh Quick | Moritz U.G. Kraemer | Kuibiao Li | Wei Li | Ru Bai | Jiufeng Sun | Changwen Ke | Huan-ying Zheng | Nick Loman | Lina Yi | Min Kang | Jun Liu | Verity Hill | Huifang Lin | Jinju Peng | Qianling Xiong | Runyu Yuan | Lilian Zeng | Pingping Zhou | Juan Su | Huanying Zheng | Bo Peng | Wenzhe Su | Ruilin Sun | Xi Tang | Minfeng Liang | Jing Lu | R. Yuan | Sarah François | Chumin Liang | Jun Liu | Zhe Liu | Huifang Lin | Sarah François | Jinju Peng | Q. Xiong | L. Zeng | P. Zhou | C. Liang | Xi Tang | Min-feng Liang
[1] Ziheng Yang. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods , 1994, Journal of Molecular Evolution.
[2] H. Kishino,et al. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA , 2005, Journal of Molecular Evolution.
[3] B. Rannala,et al. Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference , 1996, Journal of Molecular Evolution.
[4] Marco A. R. Ferreira,et al. Bayesian analysis of elapsed times in continuous‐time Markov chains , 2008 .
[5] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[6] O. Gascuel,et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.
[7] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[8] Daniel L. Ayres,et al. BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics , 2011, Systematic biology.
[9] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[10] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[11] Trevor Bedford,et al. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples , 2017, Nature Protocols.
[12] Hayden C. Metsky,et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States , 2017, Nature.
[13] U. Obolski,et al. Genomic and epidemiological monitoring of yellow fever virus transmission potential , 2018, Science.
[14] M. Suchard,et al. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 , 2018, Systematic biology.
[15] M. Kraemer,et al. Reconstruction and prediction of viral disease epidemics , 2018, Epidemiology and Infection.
[16] Heng Li,et al. Minimap2: pairwise alignment for nucleotide sequences , 2017, Bioinform..
[17] Daniel L. Ayres,et al. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 , 2018, Virus evolution.
[18] Oliver G. Pybus,et al. Precision epidemiology for infectious disease control , 2019, Nature Medicine.
[19] Wenjun Ma,et al. Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China , 2020, Cell.
[20] M. Kuroda,et al. A proposal of alternative primers for the ARTIC Network’s multiplex PCR to improve coverage of SARS-CoV-2 genome sequencing , 2020, bioRxiv.
[21] S. Mei,et al. Evidence and characteristics of human-to-human transmission of SARS-CoV-2 , 2020, medRxiv.
[22] Malik Peiris,et al. Viral dynamics in mild and severe cases of COVID-19 , 2020, The Lancet Infectious Diseases.
[23] E. Holmes,et al. A new coronavirus associated with human respiratory disease in China , 2020, Nature.
[24] Kai Zhao,et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin , 2020, Nature.
[25] G. Leung,et al. First-wave COVID-19 transmissibility and severity in China outside Hubei after control measures, and second-wave scenario planning: a modelling impact assessment , 2020, The Lancet.
[26] K. Yuen,et al. Clinical Characteristics of Coronavirus Disease 2019 in China , 2020, The New England journal of medicine.
[27] Ruifu Yang,et al. An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China , 2020, Science.
[28] Nuno R. Faria,et al. The effect of human mobility and control measures on the COVID-19 epidemic in China , 2020, Science.