Long-term maintenance of human naïve T cells through in situ homeostasis in lymphoid tissue sites

Human naïve T cells are maintained in lymph nodes for decades and clonally expand in situ after cessation of thymopoiesis. T cell life doesn’t end at 40 Naïve T cells develop in the thymus. Although thymic function declines with age, T cells are persistent throughout the human life span. Thome et al. examined human lymphoid tissues from donors ranging from 2 months to 73 years in age. They found that, although the number of double-positive thymocytes and recent thymic emigrants dropped in individuals >40 years of age, naïve T cells were functionally maintained in the lymph nodes. There was minimal overlap in clonotype between the lymph tissues, suggesting that lymph nodes may maintain a diverse set of T cell specificities. These data suggest that location really does matter—tissue compartmentalization and homeostasis are critical for maintaining naïve T cells throughout the human life span. Naïve T cells develop in the thymus and coordinate immune responses to new antigens; however, mechanisms for their long-term persistence over the human life span remain undefined. We investigated human naïve T cell development and maintenance in primary and secondary lymphoid tissues obtained from individual organ donors aged 2 months to 73 years. In the thymus, the frequency of double-positive thymocytes declined sharply in donors >40 years of age, coincident with reduced recent thymic emigrants in lymphoid tissues, whereas naïve T cells were functionally maintained predominantly in lymph nodes (LNs). Analysis of T cell receptor clonal distribution by CDR3 sequencing of naïve CD4+ and CD8+ T cells in spleen and LNs reveals site-specific clonal expansions of naïve T cells from individuals >40 years of age, with minimal clonal overlap between lymphoid tissues. We also identified biased naïve T cell clonal distribution within specific LNs on the basis of VJ usage. Together, these results suggest prolonged maintenance of naïve T cells through in situ homeostasis and retention in lymphoid tissue.

[1]  Yufeng Shen,et al.  Tracking donor-reactive T cells: Evidence for clonal deletion in tolerant kidney transplant patients , 2015, Science Translational Medicine.

[2]  M. Raica,et al.  Structural heterogeneity and immunohistochemical profile of Hassall corpuscles in normal human thymus. , 2006, Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

[3]  A. Khoruts,et al.  Visualizing the generation of memory CD4 T cells in the whole body , 2001, Nature.

[4]  Kensuke Takada,et al.  Naive T cell homeostasis: from awareness of space to a sense of place , 2009, Nature Reviews Immunology.

[5]  B. Vandekerckhove,et al.  Characterization of distinct stages during the differentiation of human CD69+CD3+ thymocytes and identification of thymic emigrants. , 1995, Journal of immunology.

[6]  Louis J. Picker,et al.  Changes in thymic function with age and during the treatment of HIV infection , 1998, Nature.

[7]  N. Bredenkamp,et al.  Regeneration of the aged thymus by a single transcription factor , 2014, Development.

[8]  H. Spits Development of αβ T cells in the human thymus , 2002, Nature Reviews Immunology.

[9]  D. Montefiori,et al.  On the composition of the preimmune repertoire of T cells specific for Peptide-major histocompatibility complex ligands. , 2010, Annual review of immunology.

[10]  D. Farber,et al.  Early life compartmentalization of human T cell differentiation and regulatory function in mucosal and lymphoid tissues , 2015, Nature Medicine.

[11]  Yufeng Shen,et al.  Spatial Map of Human T Cell Compartmentalization and Maintenance over Decades of Life , 2014, Cell.

[12]  Andreas Radbruch,et al.  Two Subsets of Naive T Helper Cells with Distinct T Cell Receptor Excision Circle Content in Human Adult Peripheral Blood , 2002, The Journal of experimental medicine.

[13]  Heather E. Lynch,et al.  Thymic involution and immune reconstitution. , 2009, Trends in immunology.

[14]  F. Miedema,et al.  T cell receptor excision circles as markers for recent thymic emigrants: basic aspects, technical approach, and guidelines for interpretation , 2001, Journal of Molecular Medicine.

[15]  H. Liao,et al.  T cell receptor excision circle assessment of thymopoiesis in aging mice. , 2002, Molecular immunology.

[16]  A. Khoruts,et al.  Naïve and Memory CD4+ T Cell Survival Controlled by Clonal Abundance , 2006, Science.

[17]  Mary M. Cavanagh,et al.  Naive T Cell Maintenance and Function in Human Aging , 2015, The Journal of Immunology.

[18]  D. Farber,et al.  Emerging concepts in tissue-resident T cells: lessons from humans. , 2015, Trends in immunology.

[19]  M. Delorenzi,et al.  Long-lasting stem cell–like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination , 2015, Science Translational Medicine.

[20]  F. Miedema,et al.  Maintenance of peripheral naive T cells is sustained by thymus output in mice but not humans. , 2012, Immunity.

[21]  K. Hirokawa,et al.  Essential Microenvironment for Thymopoiesis is Preserved in Human Adult and Aged Thymus , 2003, Clinical & developmental immunology.

[22]  R. Koup,et al.  Generation of functional thymocytes in the human adult. , 1999, Immunity.

[23]  W. Savino,et al.  Decline of FOXN1 gene expression in human thymus correlates with age: possible epigenetic regulation , 2015, Immunity & Ageing.

[24]  B. Haynes,et al.  Analysis of the human thymic perivascular space during aging. , 1999, The Journal of clinical investigation.

[25]  F. Miedema,et al.  T-cell receptor excision circle and T-cell dynamics after allogeneic stem cell transplantation are related to clinical events. , 2002, Blood.

[26]  I. Higginson,et al.  Place and Cause of Death in Centenarians: A Population-Based Observational Study in England, 2001 to 2010 , 2014, PLoS medicine.

[27]  Ryan Emerson,et al.  TCR Sequencing Can Identify and Track Glioma-Infiltrating T Cells after DC Vaccination , 2016, Cancer Immunology Research.

[28]  E. Wherry,et al.  Cutting Edge: Tissue-Retentive Lung Memory CD4 T Cells Mediate Optimal Protection to Respiratory Virus Infection , 2011, The Journal of Immunology.

[29]  M. Sykes,et al.  Distribution and compartmentalization of human circulating and tissue-resident memory T cell subsets. , 2013, Immunity.

[30]  Ivan K. Chinn,et al.  Changes in primary lymphoid organs with aging. , 2012, Seminars in immunology.

[31]  Kathy E. O’Neill,et al.  An organized and functional thymus generated from FOXN1-reprogrammed fibroblasts , 2014, Nature Cell Biology.

[32]  D. Aw,et al.  The origin and implication of thymic involution. , 2011, Aging and disease.

[33]  A. Iwasaki,et al.  Tissue‐resident memory T cells , 2013, Immunological reviews.

[34]  D. Farber,et al.  Human memory T cells: generation, compartmentalization and homeostasis , 2013, Nature Reviews Immunology.

[35]  H. Robins Immunosequencing: applications of immune repertoire deep sequencing. , 2013, Current opinion in immunology.

[36]  D. Taub,et al.  Insights into thymic aging and regeneration , 2005, Immunological reviews.

[37]  S. Jameson,et al.  Interleukin-7 mediates the homeostasis of naïve and memory CD8 T cells in vivo , 2000, Nature Immunology.

[38]  B. Haynes,et al.  The role of the thymus in immune reconstitution in aging, bone marrow transplantation, and HIV-1 infection. , 2000, Annual review of immunology.

[39]  R. D. de Boer,et al.  Do Most Lymphocytes in Humans Really Reside in the Gut? , 2022 .

[40]  Marion C Lanteri,et al.  Human memory T cells with a naïve phenotype accumulate with aging and respond to persistent viruses , 2016, Nature Immunology.

[41]  B. Haynes,et al.  Effect of Thymectomy on Human Peripheral Blood T Cell Pools in Myasthenia Gravis , 2001, The Journal of Immunology.

[42]  S. Bromley,et al.  Chemokine receptor CCR7 guides T cell exit from peripheral tissues and entry into afferent lymphatics , 2005, Nature Immunology.

[43]  P. Fink,et al.  Post-thymic maturation: young T cells assert their individuality , 2011, Nature Reviews Immunology.

[44]  Yufeng Shen,et al.  Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire , 2016, Proceedings of the National Academy of Sciences.

[45]  R. Emerson,et al.  Common clonal origin of central and resident memory T cells following skin immunization , 2015, Nature Medicine.

[46]  Abigail Wacher,et al.  Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. , 2009, Blood.

[47]  J. Sprent,et al.  Homeostasis of naive and memory T cells. , 2008, Immunity.

[48]  Gastone Castellani,et al.  CD45 isoforms expression on CD4+ and CD8+ T cells throughout life, from newborns to centenarians: implications for T cell memory , 1996, Mechanisms of Ageing and Development.

[49]  Rob J. de Boer,et al.  Thymic output: a bad TREC record , 2003, Nature Immunology.

[50]  Richard A. Olshen,et al.  Diversity and clonal selection in the human T-cell repertoire , 2014, Proceedings of the National Academy of Sciences.

[51]  Richard Murray,et al.  IL-7 is critical for homeostatic proliferation and survival of naïve T cells , 2001, Proceedings of the National Academy of Sciences of the United States of America.