Genomic landscape of rat strain and substrain variation

[1]  B. Tabakoff,et al.  Is the alcohol deprivation effect genetically mediated? Studies with HXB/BXH recombinant inbred rat strains. , 2014, Alcoholism, clinical and experimental research.

[2]  M. Stephens,et al.  fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets , 2014, Genetics.

[3]  A. Kwitek,et al.  Genomic structure of nucleotide diversity among Lyon rat models of metabolic syndrome , 2014, BMC Genomics.

[4]  David T. W. Jones,et al.  Signatures of mutational processes in human cancer , 2013, Nature.

[5]  Anushya Muruganujan,et al.  Large-scale gene function analysis with the PANTHER classification system , 2013, Nature Protocols.

[6]  Yingrui Li,et al.  Whole-Genome Sequences of DA and F344 Rats with Different Susceptibilities to Arthritis, Autoimmunity, Inflammation and Cancer , 2013, Genetics.

[7]  Thomas M. Keane,et al.  Resource Genome Sequencing Reveals Loci under Artificial Selection that Underlie Disease Phenotypes in the Laboratory Rat , 2013 .

[8]  V. Dolinsky,et al.  A low-carbohydrate/high-fat diet reduces blood pressure in spontaneously hypertensive rats without deleterious changes in insulin resistance. , 2013, American journal of physiology. Heart and circulatory physiology.

[9]  Thomas M. Keane,et al.  Combined sequence-based and genetic mapping analysis of complex traits in outbred rats , 2013, Nature Genetics.

[10]  K. Lindblad-Toh,et al.  The genomic signature of dog domestication reveals adaptation to a starch-rich diet , 2013, Nature.

[11]  Melinda R. Dwinell,et al.  The Rat Genome Database 2013—data, tools and users , 2013, Briefings Bioinform..

[12]  Edwin Cuppen,et al.  Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing , 2013, BMC Genomics.

[13]  R. Hardison.  Evolution of hemoglobin and its genes. , 2012, Cold Spring Harbor perspectives in medicine.

[14]  Thomas Zichner,et al.  DELLY: structural variant discovery by integrated paired-end and split-read analysis , 2012, Bioinform..

[15]  E. Cuppen,et al.  Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel , 2012, Genome Biology.

[16]  Pablo Cingolani,et al.  © 2012 Landes Bioscience. Do not distribute. , 2022 .

[17]  Atsunori Higashino,et al.  Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome , 2012, Genome Biology.

[18]  K. Borgwardt,et al.  Whole-genome sequencing of multiple Arabidopsis thaliana populations , 2011, Nature Genetics.

[19]  M. Gerstein,et al.  CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. , 2011, Genome research.

[20]  U. Sørensen,et al.  Effects on Atrial Fibrillation in Aged Hypertensive Rats by Ca2+-Activated K+ Channel Inhibition , 2011, Hypertension.

[21]  Catherine E. Welsh,et al.  Subspecific origin and haplotype diversity in the laboratory mouse , 2011, Nature Genetics.

[22]  B. Tabakoff,et al.  Genetical Genomic Analysis of Complex Phenotypes Using the PhenoGen Website , 2010, Behavior genetics.

[23]  H. Schulz,et al.  Geno-transcriptomic dissection of proteinuria in the uninephrectomized rat uncovers a molecular complexity with sexual dimorphism. , 2010, Physiological genomics.

[24]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[25]  Inanç Birol,et al.  The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. , 2010, Genome research.

[26]  Yoshihito Niimura,et al.  Evolutionary dynamics of olfactory receptor genes in chordates: interaction between environments and genomic contents , 2009, Human Genomics.

[27]  Peter C. Dolan,et al.  A genome-wide view of Caenorhabditis elegans base-substitution mutation processes , 2009, Proceedings of the National Academy of Sciences.

[28]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[29]  Lior Pachter,et al.  Sequence Analysis , 2020, Definitions.

[30]  F. Middleton,et al.  Behavioral and genetic evidence for a novel animal model of Attention-Deficit/Hyperactivity Disorder Predominantly Inattentive Subtype , 2008, Behavioral and Brain Functions.

[31]  E. Birney,et al.  SNP and haplotype mapping for genetic analysis in the rat , 2008, Nature Genetics.

[32]  H. Jacob,et al.  Identification of a QTL on chromosome 1 for impaired autoregulation of RBF in fawn-hooded hypertensive rats. , 2006, American journal of physiology. Renal physiology.

[33]  Bart M. G. Smits,et al.  Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates , 2005, BMC Genomics.

[34]  D. Haussler,et al.  Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. , 2005, Genome research.

[35]  Lisa M. D'Souza,et al.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution , 2004, Nature.

[36]  C. Wotjak.  C57BLack/BOX? The importance of exact mouse strain nomenclature. , 2003, Trends in genetics : TIG.

[37]  M. Bihoreau,et al.  Genetic Mapping of Blood Pressure Quantitative Trait Loci in Milan Hypertensive Rats , 2000, Hypertension.

[38]  W. Thilly,et al.  Mismatch repair deficient human cells: spontaneous and MNNG-induced mutational spectra in the HPRT gene. , 2000, Mutation research.

[39]  H. Jacob,et al.  Functional genomics and rat models. , 1999, Genome research.

[40]  G. Lathrop,et al.  Linkage analysis and construction of a congenic strain for a blood pressure QTL on rat chromosome 9. , 1998, Genomics.

[41]  M. Evans,et al.  Reactive Oxygen Species and their Cytotoxic Mechanisms , 1997 .

[42]  T. Kurtz,et al.  Molecular Evidence of Genetic Heterogeneity in Wistar‐Kyoto Rats: Implications for Research With the Spontaneously Hypertensive Rat , 1989, Hypertension.

[43]  V. Křen.  Genetics of the polydactyly-luxate syndrome in the Norway rat, Rattus norvegicus. , 1975, Acta Universitatis Carolinae. Medica. Monographia.

[44]  K. Abromeit.  Music Received , 2023, Notes.