QSAR models for predicting acute toxicity of pesticides in rainbow trout using the CORAL software and EFSA's OpenFoodTox database.

Optimal (flexible) descriptors were used to establish quantitative structure - activity relationships (QSAR) for toxicity of pesticides (n=116) towards rainbow trout. A heterogeneous set of hundreds of pesticides has been used, taken from the EFSA's chemical Hazards Database: OpenFoodTox. Optimal descriptors are preparing from simplified molecular input-line entry system (SMILES). So-called, correlation weights of different fragments of SMILES are calculating by the Monte Carlo optimization procedure where correlation coefficient between endpoint and optimal descriptor plays role of the target function. Having maximum of the correlation coefficient for the training set, one can suggest that the optimal descriptor calculated with these correlation weights can correlate with endpoint for external validation set. This approach was checked up with three different distributions into the training (≈85%) set and external validation (≈15%) set. The statistical characteristics of these models are (i) for training set correlation coefficient (r2) ranges 0.72-0.81, and root mean squared error (RMSE) ranges 0.54-1.25; (ii) for external (validation) set r2 ranges 0.74-0.84; and RMSE ranges 0.64-0.75. Computational experiments have shown that presence of chlorine, fluorine, sulfur, and aromatic fragments is promoter of increase for the toxicity.

[1]  Emilio Benfenati,et al.  The application of new HARD-descriptor available from the CORAL software to building up NOAEL models. , 2017, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

[2]  Frédéric Y Bois,et al.  Toxicokinetic models and related tools in environmental risk assessment of chemicals. , 2017, The Science of the total environment.

[3]  Andrey A Toropov,et al.  Building up a QSAR model for toxicity toward Tetrahymena pyriformis by the Monte Carlo method: A case of benzene derivatives. , 2016, Environmental toxicology and pharmacology.

[4]  E. Benfenati,et al.  QSAR modelling of aldehyde toxicity against a protozoan, Tetrahymena pyriformis by optimization of correlation weights of nearest neighboring codes , 2004 .

[5]  Jerzy Leszczynski,et al.  QSAR model as a random event: A case of rat toxicity. , 2015, Bioorganic & medicinal chemistry.

[6]  Gerta Rücker,et al.  y-Randomization and Its Variants in QSPR/QSAR , 2007, J. Chem. Inf. Model..

[7]  Shikha Gupta,et al.  Predicting acute aquatic toxicity of structurally diverse chemicals in fish using artificial intelligence approaches. , 2013, Ecotoxicology and environmental safety.

[9]  M. Cronin,et al.  Quantitative structure-activity relationships for the toxicity of organophosphorus and carbamate pesticides to the Rainbow trout Onchorhyncus mykiss. , 2006, Pest management science.

[10]  Manuela Pavan,et al.  Further development and update of EFSA's Chemical Hazards Database , 2015 .

[11]  Kyoung Tai No,et al.  Prediction of Acute Toxicity to Fathead Minnow by Local Model Based QSAR and Global QSAR Approaches , 2012 .

[12]  Fuliu Xu,et al.  A QSAR model for predicting toxicity (LC50) to rainbow trout. , 2002, Water research.

[13]  OECD Environment Health and Safety Publications Series on Testing and Assessment No. 80 GUIDANCE ON GROUPING OF CHEMICALS , 2008 .

[14]  David Weininger,et al.  SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules , 1988, J. Chem. Inf. Comput. Sci..

[15]  R Todeschini,et al.  A similarity-based QSAR model for predicting acute toxicity towards the fathead minnow (Pimephales promelas). , 2015, SAR and QSAR in environmental research (Print).

[16]  Mohammad Valipour,et al.  How Much Meteorological Information Is Necessary to Achieve Reliable Accuracy for Rainfall Estimations , 2016 .

[17]  T M Martin,et al.  Prediction of the acute toxicity (96-h LC50) of organic compounds to the fathead minnow (Pimephales promelas) using a group contribution method. , 2001, Chemical research in toxicology.

[18]  G. Yoshizaki,et al.  Generation of juvenile rainbow trout derived from cryopreserved whole ovaries by intraperitoneal transplantation of ovarian germ cells. , 2016, Biochemical and biophysical research communications.

[19]  E. Benfenati,et al.  Chapter 3 – Characterization of chemical structures , 2007 .

[20]  O. Raevsky,et al.  Classification and Quantification of the Toxicity of Chemicals to Guppy, Fathead Minnow and Rainbow Trout: Part 1. Nonpolar Narcosis Mode of Action , 2008 .

[21]  A. Kahru,et al.  Toxicity of 58 substituted anilines and phenols to algae Pseudokirchneriella subcapitata and bacteria Vibrio fischeri: comparison with published data and QSARs. , 2011, Chemosphere.

[22]  E. Benfenati,et al.  Correlation weighting of valence shells in QSAR analysis of toxicity. , 2006, Bioorganic & medicinal chemistry.

[23]  Adam Lillicrap,et al.  The fish embryo toxicity test as an animal alternative method in hazard and risk assessment and scientific research. , 2010, Aquatic toxicology.

[24]  Philippe Verger,et al.  Combining analytical techniques, exposure assessment and biological effects for risk assessment of chemicals in food , 2009 .

[25]  Andrey A. Toropov,et al.  Prediction of Aquatic Toxicity: Use of Optimization of Correlation Weights of Local Graph Invariants , 2003, J. Chem. Inf. Comput. Sci..

[26]  Wang Li,et al.  Evolution of Water Lifting Devices (Pumps) over the Centuries Worldwide , 2015 .

[27]  T M Martin,et al.  MOAtox: A comprehensive mode of action and acute aquatic toxicity database for predictive model development. , 2015, Aquatic toxicology.

[28]  E. Benfenati,et al.  QSAR models for Daphnia toxicity of pesticides based on combinations of topological parameters of molecular structures. , 2006, Bioorganic & medicinal chemistry.

[29]  Marco Pintore,et al.  Chapter 7 – Results of DEMETRA models , 2007 .

[30]  Soluzioni Informatiche S-In Further development and update of EFSA's Chemical Hazards Database (NP/EFSA/EMRISK/2012/01) , 2014 .

[31]  Oliver A.H. Jones,et al.  Systems toxicology approaches for understanding the joint effects of environmental chemical mixtures. , 2010, The Science of the total environment.

[32]  Zongxue Xu,et al.  Temporal variations of reference evapotranspiration and its sensitivity to meteorological factors in Heihe River Basin, China , 2015 .

[33]  G. Cash Prediction of chemical toxicity to aquatic organisms: ECOSAR vs. Microtox® Assay , 1998 .

[34]  Vladimir B Bajic,et al.  In silico toxicology: computational methods for the prediction of chemical toxicity , 2016, Wiley interdisciplinary reviews. Computational molecular science.

[35]  M. Abraham,et al.  Toxicity of organic chemicals to Tetrahymena pyriformis: effect of polarity and ionization on toxicity. , 2010, Chemosphere.

[36]  M. Novič,et al.  Robust modelling of acute toxicity towards fathead minnow (Pimephales promelas) using counter-propagation artificial neural networks and genetic algorithm , 2016, SAR and QSAR in environmental research.

[37]  P. Dorn,et al.  Acute toxicity and structure‐activity relationships of nine alcohol ethoxylate surfactants to fathead minnow and Daphnia magna , 1997 .

[38]  Matthias Greiner,et al.  Guidance on the use of the weight of evidence approach in scientific assessments , 2017, EFSA journal. European Food Safety Authority.

[39]  Bruno Sarmento,et al.  Insights on in vitro models for safety and toxicity assessment of cosmetic ingredients. , 2017, International journal of pharmaceutics.

[40]  MANUAL FOR INVESTIGATION OF HPV CHEMICALS CHAPTER 4: INITIAL ASSESSMENT OF DATA 4.3 Guidance for the Initial Assessment of Health Effects , 2002 .

[41]  Jerzy Leszczynski,et al.  Monte Carlo–based quantitative structure–activity relationship models for toxicity of organic chemicals to Daphnia magna , 2016, Environmental toxicology and chemistry.

[42]  Mohammad Valipour,et al.  VARIATIONS OF LAND USE AND IRRIGATION FOR NEXT DECADES UNDER DIFFERENT SCENARIOS , 2016, IRRIGA.

[43]  G. Gini,et al.  QSAR Models for Toxicity of Organic Substances to Daphnia magna Built up by Using the CORAL Freeware , 2012, Chemical biology & drug design.

[44]  Paola Gramatica,et al.  Daphnia and fish toxicity of (benzo)triazoles: validated QSAR models, and interspecies quantitative activity-activity modelling. , 2013, Journal of hazardous materials.

[45]  I. Raška,et al.  Improved building up a model of toxicity towards Pimephales promelas by the Monte Carlo method. , 2016, Environmental toxicology and pharmacology.

[46]  Hans Verhagen,et al.  Editorial: OpenFoodTox: EFSA's open source toxicological database on chemical hazards in food and feed , 2017, EFSA journal. European Food Safety Authority.

[47]  Worth Andrew,et al.  Review of Data Sources, QSARs and Integrated Testing Strategies for Aquatic Toxicity , 2007 .

[48]  Giuseppina C. Gini,et al.  Coral: QSAR models for acute toxicity in fathead minnow (Pimephales promelas) , 2012, J. Comput. Chem..

[49]  E. Benfenati,et al.  QSAR modelling of the toxicity to Tetrahymena pyriformis by balance of correlations , 2010, Molecular Diversity.

[50]  Mohammad Valipour,et al.  Selecting the best model to estimate potential evapotranspiration with respect to climate change and magnitudes of extreme events , 2017 .

[51]  E. Benfenati,et al.  Assessment of in silico models for acute aquatic toxicity towards fish under REACH regulation , 2015, SAR and QSAR in environmental research.

[52]  D. Stuckey,et al.  Toxicity measurement in biological wastewater treatment processes: a review. , 2015, Journal of hazardous materials.

[53]  Jerzy Leszczynski,et al.  CORAL: QSAR modeling of toxicity of organic chemicals towards Daphnia magna , 2012 .

[54]  J. Leszczynski,et al.  Monte Carlo based QSAR models for toxicity of organic chemicals to Daphnia magna , 2016 .

[55]  Manuela Pavan,et al.  Report on “Data collection and data entry for EFSA's chemical hazards database NP/EFSA/EMRISK/2011/01” , 2013 .

[56]  M. Valipour Optimization of neural networks for precipitation analysis in a humid region to detect drought and wet year alarms , 2016 .

[57]  Y. Wang,et al.  Using support vector regression coupled with the genetic algorithm for predicting acute toxicity to the fathead minnow , 2010, SAR and QSAR in environmental research.