Estimating Tree Height-Diameter Models with the Bayesian Method

Six candidate height-diameter models were used to analyze the height-diameter relationships. The common methods for estimating the height-diameter models have taken the classical (frequentist) approach based on the frequency interpretation of probability, for example, the nonlinear least squares method (NLS) and the maximum likelihood method (ML). The Bayesian method has an exclusive advantage compared with classical method that the parameters to be estimated are regarded as random variables. In this study, the classical and Bayesian methods were used to estimate six height-diameter models, respectively. Both the classical method and Bayesian method showed that the Weibull model was the “best” model using data1. In addition, based on the Weibull model, data2 was used for comparing Bayesian method with informative priors with uninformative priors and classical method. The results showed that the improvement in prediction accuracy with Bayesian method led to narrower confidence bands of predicted value in comparison to that for the classical method, and the credible bands of parameters with informative priors were also narrower than uninformative priors and classical method. The estimated posterior distributions for parameters can be set as new priors in estimating the parameters using data2.

[1]  R. Curtis Height-Diameter and Height-Diameter-Age Equations For Second-Growth Douglas-Fir , 1967 .

[2]  H. Temesgen,et al.  Generalized height–diameter models—an application for major tree species in complex stands of interior British Columbia , 2004, European Journal of Forest Research.

[3]  D. Hann,et al.  Height-diameter equations for seventeen tree species in southwest Oregon , 1987 .

[4]  J. Lappi Calibration of Height and Volume Equations with Random Parameters , 1991, Forest Science.

[5]  James S. Clark,et al.  Predicting tree mortality from diameter growth : a comparison of maximum likelihood and Bayesian approaches , 2000 .

[6]  Harold E. Burkhart,et al.  An Evaluation of Sampling Methods and Model Forms for Estimating Height-Diameter Relationships in Loblolly Pine Plantations , 1992, Forest Science.

[7]  D. Fekedulegn,et al.  Parameter Estimation of Nonlinear Models in Forestry. , 1999 .

[8]  James S. Clark,et al.  Tree growth inference and prediction from diameter censuses and ring widths. , 2007, Ecological applications : a publication of the Ecological Society of America.

[9]  Sean M. McMahon,et al.  Overcoming data sparseness and parametric constraints in modeling of tree mortality: a new nonparametric Bayesian model , 2009 .

[10]  Martin W. Ritchie,et al.  Development of a tree height growth model for Douglas-fir , 1986 .

[11]  Mahadev Sharma,et al.  Height–diameter equations for boreal tree species in Ontario using a mixed-effects modeling approach , 2007 .

[12]  Douglas P. Wiens,et al.  Comparison of nonlinear height–diameter functions for major Alberta tree species , 1992 .

[13]  Francis E. Putz,et al.  INFLUENCE OF NEIGHBORS ON TREE FORM: EFFECTS OF LATERAL SHADE AND PREVENTION OF SWAY ON THE ALLOMETRY OF LIQUIDAMBAR STYRACIFLUA (SWEET GUM) , 1989 .

[14]  J. Mayer Problems of Organic Growth , 1949, Nature.

[15]  E. Jaynes Probability theory : the logic of science , 2003 .

[16]  E. Boone,et al.  Deriving tree diameter distributions using Bayesian model averaging , 2007 .

[17]  C. Peng,et al.  Developing and Validating Nonlinear Height-Diameter Models for Major Tree Species of Ontario's Boreal Forests , 2001 .

[18]  D. Hann,et al.  Regional height-diameter equations for major tree species of southwest Oregon. , 2007 .

[19]  L. C. Wensel,et al.  A Generalized Height-Diameter Equation for Coastal California Species , 1988 .

[20]  A. Chao,et al.  PREDICTING THE NUMBER OF NEW SPECIES IN FURTHER TAXONOMIC SAMPLING , 2003 .

[21]  L. Zhang Cross-validation of Non-linear Growth Functions for Modelling Tree Height–Diameter Relationships , 1997 .

[22]  Aaron R. Weiskittel,et al.  A Bayesian approach for modelling non-linear longitudinal/hierarchical data with random effects in forestry , 2012 .

[23]  David A. Ratkowsky,et al.  Handbook of nonlinear regression models , 1990 .

[24]  J. R. Wallis,et al.  Some ecological consequences of a computer model of forest growth , 1972 .

[25]  J. H. Smith,et al.  The potential of Weibull-type functions as flexible growth curves , 1978 .

[26]  Yonghe Wang,et al.  Canada’s Forest Biomass Resources: Deriving Estimates from Canada’s Forest Inventory , 1997 .

[27]  J. Chambers,et al.  Tree allometry and improved estimation of carbon stocks and balance in tropical forests , 2005, Oecologia.

[28]  Philip M. Fearnside,et al.  Tree height in Brazil's 'arc of deforestation' : Shorter trees in south and southwest Amazonia imply lower biomass , 2008 .

[29]  David K. Skelly,et al.  EFFECT OF FOOD AND PREDATORS ON THE ACTIVITY OF FOUR LARVAL RANID FROGS , 2000 .

[30]  Francis A. Roesch,et al.  Bayesian estimation for the three-parameter Weibull distribution with tree diameter data , 1994 .

[31]  Heikki Mannila,et al.  APPLYING BAYESIAN STATISTICS TO ORGANISM-BASED ENVIRONMENTAL RECONSTRUCTION , 2001 .

[32]  Rafael Calama,et al.  Interregional nonlinear height-diameter model with random coefficients for stone pine in Spain , 2004 .

[33]  Aki Vehtari Discussion to "Bayesian measures of model complexity and fit" by Spiegelhalter, D.J., Best, N.G., Carlin, B.P., and van der Linde, A. , 2002 .

[34]  W. Strawderman,et al.  Predictive posterior distributions from a Bayesian version of a slash pine yield model , 1996 .

[35]  A. Jansen Bayesian Methods for Ecology , 2009 .

[36]  J. G. González,et al.  A height-diameter model for Pinus radiata D. Don in Galicia (Northwest Spain) , 2003 .

[37]  S. Chib,et al.  Understanding the Metropolis-Hastings Algorithm , 1995 .

[38]  Carlos A. Sierra,et al.  Probability distribution of allometric coefficients and Bayesian estimation of aboveground tree biomass , 2012 .

[39]  D. A. King Tree allometry, leaf size and adult tree size in old-growth forests of western Oregon. , 1991, Tree physiology.

[40]  Aaron M. Ellison,et al.  Bayesian inference in ecology , 2004 .

[41]  C. Peng,et al.  Developing and Evaluating Tree Height-Diameter Models at Three Geographic Scales for Black Spruce in Ontario , 2004 .

[42]  Boris Zeide,et al.  Analysis of Growth Equations , 1993 .

[43]  D. Richardson,et al.  Defining optimal sampling effort for large-scale monitoring of invasive alien plants: a Bayesian method for estimating abundance and distribution. , 2011 .

[44]  P. Newton,et al.  Comparative evaluation of five height–diameter models developed for black spruce and jack pine stand-types in terms of goodness-of-fit, lack-of-fit and predictive ability , 2007 .

[45]  D. Fekedulegn,et al.  Parameter estimation of nonlinear growth models in forestry , 1999 .

[46]  Göran Ståhl,et al.  Forecasting probability distributions of forest yield allowing for a Bayesian approach to management planning , 2001 .

[47]  James O. Berger,et al.  Statistical Analysis and the Illusion of Objectivity , 1988 .

[48]  Jerome K. Vanclay,et al.  Modelling Forest Growth and Yield: Applications to Mixed Tropical Forests , 1994 .

[49]  Philip M. Dixon,et al.  Introduction: Ecological Applications of Bayesian Inference , 1996 .

[50]  R. Sharma Modelling height-diameter relationship for Chir pine trees , 2010 .

[51]  J. Flewelling,et al.  Considerations in simultaneous curve fitting for repeated height–diameter measurements , 1994 .

[52]  Cang Hui,et al.  A spatially explicit approach to estimating species occupancy and spatial correlation. , 2006, The Journal of animal ecology.

[53]  R. L. Bailey,et al.  Height-diameter models for tropical forests on Hainan Island in southern China , 1998 .

[54]  John K Kruschke,et al.  Bayesian data analysis. , 2010, Wiley interdisciplinary reviews. Cognitive science.

[55]  Bradley P. Carlin,et al.  Bayesian measures of model complexity and fit , 2002 .

[56]  David R. Larsen,et al.  Height-diameter equations for thirteen midwestern bottomland hardwood species , 2002 .

[57]  F. J. Richards A Flexible Growth Function for Empirical Use , 1959 .

[58]  Alan Hastings,et al.  FITTING POPULATION MODELS INCORPORATING PROCESS NOISE AND OBSERVATION ERROR , 2002 .