Protein-Protein Interactions: Principles, Techniques, and their Potential Role in New Drug Development
暂无分享,去创建一个
Faizan Ahmad | Nihal Ahmad | F. Ahmad | Raj Kumar | N. Ahmad | D. Flynn | Shagufta Khan | Shagufta H Khan | Daniel C Flynn | Raj Kumar
[1] A. Nekrasov,et al. Structural Features of the Interfaces in Enzyme-Inhibitor Complexes , 2010, Journal of biomolecular structure & dynamics.
[2] J. Fetrow,et al. Conformational and Oligomeric Effects on the Cysteine pKa of Tryparedoxin Peroxidase , 2010, Journal of biomolecular structure & dynamics.
[3] Hung-Jin Huang,et al. Structure-Based and Ligand-Based Drug Design for HER 2 Receptor , 2010, Journal of biomolecular structure & dynamics.
[4] Aaron Klug,et al. The discovery of zinc fingers and their applications in gene regulation and genome manipulation. , 2010, Annual review of biochemistry.
[5] V. Mbazima,et al. Interactions between PrP(c) and other ligands with the 37-kDa/67-kDa laminin receptor. , 2010, Frontiers in bioscience.
[6] V. Uversky,et al. The protein kingdom extended: ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation. , 2010, Progress in biophysics and molecular biology.
[7] Jinyan Li,et al. Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective , 2010, BMC Bioinformatics.
[8] G. Sobue,et al. Disrupted Transforming Growth Factor-β Signaling in Spinal and Bulbar Muscular Atrophy , 2010, The Journal of Neuroscience.
[9] R. Kumar,et al. Influence of flanking sequences on signaling between the activation function AF1 and DNA-binding domain of the glucocorticoid receptor. , 2010, Archives of biochemistry and biophysics.
[10] K. Ono,et al. [Search for antiamyloidogenic compounds based on a nucleation-dependent polymerization model]. , 2010, Yakugaku zasshi : Journal of the Pharmaceutical Society of Japan.
[11] Bin Wu,et al. Community Structure and Role Analysis in Biological Networks , 2010, Journal of biomolecular structure & dynamics.
[12] Matt W. Jones. Errant ensembles: dysfunctional neuronal network dynamics in schizophrenia. , 2010, Biochemical Society transactions.
[13] James O. Wrabl,et al. Investigating Homology between Proteins using Energetic Profiles , 2010, PLoS Comput. Biol..
[14] R. Varma,et al. Immunological synapse: a multi‐protein signalling cellular apparatus for controlling gene expression , 2010, Immunology.
[15] Maria Paola Costi,et al. Homodimeric enzymes as drug targets. , 2010, Current medicinal chemistry.
[16] Xiaoli Li,et al. Computational approaches for detecting protein complexes from protein interaction networks: a survey , 2010, BMC Genomics.
[17] Raj Kumar,et al. An Overview of the Importance of Conformational Flexibility in Gene Regulation by the Transcription Factors , 2010, Journal of biophysics.
[18] J. Zlatanova,et al. BRCA1/BARD1 E3 Ubiquitin Ligase Can Modify Histones H2A and H2B in the Nucleosome Particle , 2010, Journal of biomolecular structure & dynamics.
[19] Li Zhao,et al. Hot-spot mutations in p110α of phosphatidylinositol 3-kinase (PI3K): Differential interactions with the regulatory subunit p85 and with RAS , 2010, Cell cycle.
[20] J. Dopazo,et al. Functional genomics and networks: new approaches in the extraction of complex gene modules , 2010, Expert review of proteomics.
[21] Christopher J. Oldfield,et al. N-terminal Domains of DELLA Proteins Are Intrinsically Unstructured in the Absence of Interaction with GID1/Gibberellic Acid Receptors* , 2010, The Journal of Biological Chemistry.
[22] P. Collas. The Current State of Chromatin Immunoprecipitation , 2010, Molecular biotechnology.
[23] P. Marin,et al. GPCR interacting proteins (GIPs) in the nervous system: Roles in physiology and pathologies. , 2010, Annual review of pharmacology and toxicology.
[24] W. Sebald,et al. Molecular basis of cytokine signalling – theme and variations , 2010, The FEBS journal.
[25] Jason H. Moore,et al. Role for protein–protein interaction databases in human genetics , 2009, Expert review of proteomics.
[26] T. Lane,et al. Exploiting Amino Acid Composition for Predicting Protein-Protein Interactions , 2009, PloS one.
[27] Raj Kumar,et al. Structural and functional relationships of the steroid hormone receptors’ N-terminal transactivation domain , 2009, Steroids.
[28] R. Nussinov,et al. The role of dynamic conformational ensembles in biomolecular recognition. , 2009, Nature chemical biology.
[29] Raj Kumar,et al. Site-Specific Phosphorylation Induces Functionally Active Conformation in the Intrinsically Disordered N-Terminal Activation Function (AF1) Domain of the Glucocorticoid Receptor , 2009, Molecular and Cellular Biology.
[30] H. Jarrett,et al. Methods for proteomic analysis of transcription factors. , 2009, Journal of chromatography. A.
[31] H. Toh,et al. Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network. , 2009, Journal of molecular biology.
[32] Alberto Inga,et al. The expanding universe of p53 targets , 2009, Nature Reviews Cancer.
[33] A. Cordomí,et al. Structural Rearrangements of Rhodopsin Subunits in a Dimer Complex: a Molecular Dynamics Simulation Study , 2009, Journal of biomolecular structure & dynamics.
[34] Miquel Pons,et al. Dynamic interactions of proteins in complex networks: a more structured view , 2009, The FEBS journal.
[35] Ning Wang,et al. FRET and mechanobiology. , 2009, Integrative biology : quantitative biosciences from nano to macro.
[36] D. Edwards,et al. A Progesterone Receptor Co-activator (JDP2) Mediates Activity through Interaction with Residues in the Carboxyl-terminal Extension of the DNA Binding Domain♦ , 2009, The Journal of Biological Chemistry.
[37] Uwe Schlattner,et al. Yeast Two-Hybrid, a Powerful Tool for Systems Biology , 2009, International journal of molecular sciences.
[38] Suyun Huang,et al. STAT3 as a central regulator of tumor metastases. , 2009, Current molecular medicine.
[39] Dan S. Tawfik,et al. Protein Dynamism and Evolvability , 2009, Science.
[40] H. Dyson,et al. Structural basis for recruitment of CBP/p300 coactivators by STAT1 and STAT2 transactivation domains , 2009, The EMBO journal.
[41] Jimin Xie,et al. Investigation of the Effect of Glycosylation on Human Prion Protein by Molecular Dynamics , 2009, Journal of biomolecular structure & dynamics.
[42] Piramanayagam Shanmughavel,et al. Molecular Modeling of Human Pentameric α7 Neuronal Nicotinic Acetylcholine Receptor and Its Interaction with its Agonist and Competitive Antagonist , 2009, Journal of biomolecular structure & dynamics.
[43] Shaomeng Wang,et al. Small-molecule inhibitors of the MDM2-p53 protein-protein interaction to reactivate p53 function: a novel approach for cancer therapy. , 2009, Annual review of pharmacology and toxicology.
[44] S. Vishveshwara,et al. Stability of dimeric interface in banana lectin: Insight from molecular dynamics simulations , 2009, IUBMB life.
[45] R. Kane,et al. Multivalency-assisted control of intracellular signaling pathways: application for ubiquitin- dependent N-end rule pathway. , 2009, Chemistry & biology.
[46] Raj Kumar,et al. Role of intrinsically disordered protein regions/domains in transcriptional regulation. , 2009, Life sciences.
[47] Dinesh Gupta,et al. Molecular Modeling Studies of the Interaction Between Plasmodium falciparum HslU and HslV Subunits , 2009, Journal of biomolecular structure & dynamics.
[48] K. Sekar,et al. Conserved Water Mediated H-bonding Dynamics of Inhibitor, Cofactor, Asp 364 and Asn 303 in Human IMPDH II , 2009, Journal of biomolecular structure & dynamics.
[49] Hsuan-Liang Liu,et al. Molecular Dynamics Simulations to Investigate the Aggregation Behaviors of the Aß(17–42) Oligomers , 2009, Journal of biomolecular structure & dynamics.
[50] H. Dyson,et al. Linking folding and binding. , 2009, Current opinion in structural biology.
[51] G. Daughdrill,et al. A robust approach for analyzing a heterogeneous structural ensemble , 2008, Proteins.
[52] Mark A Sussman,et al. Nuclear and mitochondrial signalling Akts in cardiomyocytes. , 2008, Cardiovascular research.
[53] P. Cole,et al. Chemical probes for histone-modifying enzymes. , 2008, Nature chemical biology.
[54] Shu Chien,et al. Determination of hierarchical relationship of Src and Rac at subcellular locations with FRET biosensors , 2008, Proceedings of the National Academy of Sciences.
[55] Igor Stagljar,et al. Two-hybrid technologies in proteomics research. , 2008, Current opinion in biotechnology.
[56] Mph Stumpf,et al. Protein-protein interactions: from global to local analyses. , 2008, Current opinion in biotechnology.
[57] V. Sheffield,et al. Genetic interaction between Bardet-Biedl syndrome genes and implications for limb patterning. , 2008, Human molecular genetics.
[58] D. Boehr,et al. How Do Proteins Interact? , 2008, Science.
[59] Christopher J. Oldfield,et al. Intrinsically disordered proteins in human diseases: introducing the D2 concept. , 2008, Annual review of biophysics.
[60] Robert E Campbell,et al. Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors , 2008, Nature Methods.
[61] A Keith Dunker,et al. Signal transduction via unstructured protein conduits. , 2008, Nature chemical biology.
[62] R. Sharan,et al. Protein networks in disease. , 2008, Genome research.
[63] I. McEwan,et al. Functional characterization of the native NH2-terminal transactivation domain of the human androgen receptor: binding kinetics for interactions with TFIIF and SRC-1a. , 2008, Biochemistry.
[64] P. Romero,et al. Natively Disordered Proteins , 2008, Applied bioinformatics.
[65] J. Shand,et al. Molecular interactions in the insulin-like growth factor (IGF) axis: a surface plasmon resonance (SPR) based biosensor study , 2007, Molecular and Cellular Biochemistry.
[66] Sara Linse,et al. Methods for the detection and analysis of protein–protein interactions , 2007, Proteomics.
[67] H. Dyson,et al. Mechanism of coupled folding and binding of an intrinsically disordered protein , 2007, Nature.
[68] J. Locker,et al. Characterization of Distant Enhancers and Promoters in the Albumin-α-Fetoprotein Locus during Active and Silenced Expression* , 2006, Journal of Biological Chemistry.
[69] Marc S. Cortese,et al. Rational drug design via intrinsically disordered protein. , 2006, Trends in biotechnology.
[70] A. Giaccia,et al. Functional Analysis of p53 Binding under Differential Stresses , 2006, Molecular and Cellular Biology.
[71] C. Mayanil,et al. Regulation of Murine TGFβ2 by Pax3 during Early Embryonic Development* , 2006, Journal of Biological Chemistry.
[72] George C Schatz,et al. Localized surface plasmon resonance spectroscopy near molecular resonances. , 2006, Journal of the American Chemical Society.
[73] N. Timchenko,et al. Identification of a Co-repressor That Inhibits the Transcriptional and Growth-Arrest Activities of CCAAT/Enhancer-binding Protein α* , 2006, Journal of Biological Chemistry.
[74] H. Hsu,et al. Physiological and Functional Interactions between Tcf4 and Daxx in Colon Cancer Cells* , 2006, Journal of Biological Chemistry.
[75] H. Yasuda,et al. Interactions between PIAS Proteins and SOX9 Result in an Increase in the Cellular Concentrations of SOX9* , 2006, Journal of Biological Chemistry.
[76] S. Riva,et al. Rac3-induced neuritogenesis requires binding to Neurabin I. , 2006, Molecular biology of the cell.
[77] P. Desai,et al. Functional Analysis of the Triplex Proteins (VP19C and VP23) of Herpes Simplex Virus Type 1 , 2006, Journal of Virology.
[78] I. Nabi,et al. Fluorescence-quenching and resonance energy transfer studies of lipid microdomains in model and biological membranes (Review) , 2006, Molecular membrane biology.
[79] Sonia Longhi,et al. Assessing protein disorder and induced folding , 2005, Proteins.
[80] Marc S. Cortese,et al. Coupled folding and binding with α-helix-forming molecular recognition elements , 2005 .
[81] E. Freire,et al. ITC in the post-genomic era...? Priceless. , 2005, Biophysical chemistry.
[82] A. Fink. Natively unfolded proteins. , 2005, Current opinion in structural biology.
[83] Rob Kaptein,et al. Structural properties of the promiscuous VP16 activation domain. , 2005, Biochemistry.
[84] D. Volk,et al. TATA box binding protein induces structure in the recombinant glucocorticoid receptor AF1 domain. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[85] A. Haes,et al. A unified view of propagating and localized surface plasmon resonance biosensors , 2004, Analytical and bioanalytical chemistry.
[86] Danny Reinberg,et al. A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. , 2004, Genes & development.
[87] Peter A. Jones,et al. Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[88] Raj Kumar,et al. Induced alpha-helix structure in AF1 of the androgen receptor upon binding transcription factor TFIIF. , 2004, Biochemistry.
[89] Peter E Wright,et al. Effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase. , 2004, Biochemistry.
[90] Tapas K. Kundu,et al. Small Molecule Modulators of Histone Acetyltransferase p300* , 2003, Journal of Biological Chemistry.
[91] T. Richmond,et al. Chromatin fiber folding: requirement for the histone H4 N-terminal tail. , 2003, Journal of molecular biology.
[92] M. Matsuda,et al. Activation of Rac and Cdc42 Video Imaged by Fluorescent Resonance Energy Transfer-Based Single-Molecule Probes in the Membrane of Living Cells , 2002, Molecular and Cellular Biology.
[93] E. Freire,et al. Direct measurement of protein binding energetics by isothermal titration calorimetry. , 2001, Current opinion in structural biology.
[94] J R Desjarlais,et al. Solvation energetics and conformational change in EF‐hand proteins , 2001, Protein science : a publication of the Protein Society.
[95] K. Lumb,et al. Intrinsic structural disorder of the C-terminal activation domain from the bZIP transcription factor Fos. , 2000, Biochemistry.
[96] C. Allis,et al. Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[97] J. Lee,et al. Interdomain Signaling in a Two-domain Fragment of the Human Glucocorticoid Receptor* , 1999, The Journal of Biological Chemistry.
[98] A. Bradbury. Display technologies expand their horizons. , 1999, Trends in biotechnology.
[99] L. Kedes,et al. Differential roles of p300 and PCAF acetyltransferases in muscle differentiation. , 1997, Molecular cell.
[100] M. Doyle,et al. Characterization of binding interactions by isothermal titration calorimetry. , 1997, Current opinion in biotechnology.
[101] E. Di Cera,et al. Theory of multivalent binding in one and two-dimensional lattices. , 1996, Biophysical chemistry.
[102] P E Wright,et al. Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[103] K. P. Murphy,et al. Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry. , 1996, Biophysical journal.
[104] S. Jones,et al. Principles of protein-protein interactions. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[105] J. Johnson,et al. Functional implications of protein-protein interactions in icosahedral viruses. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[106] T. Sosnick,et al. Protein folding intermediates: native-state hydrogen exchange. , 1995, Science.
[107] S. Fields,et al. Protein-protein interactions: methods for detection and analysis , 1995, Microbiological reviews.
[108] M. Oobatake,et al. Thermal unfolding of tetrameric melittin: Comparison with the molten globule state of cytochrome c , 1994, Protein science : a publication of the Protein Society.
[109] S. Fields,et al. The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[110] C. Sander,et al. Database of homology‐derived protein structures and the structural meaning of sequence alignment , 1991, Proteins.
[111] F. Richards,et al. Thermodynamics of protein-peptide interactions in the ribonuclease S system studied by titration calorimetry. , 1990, Biochemistry.
[112] S. Fields,et al. A novel genetic system to detect proteinprotein interactions , 1989, Nature.
[113] J F Brandts,et al. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. , 1989, Analytical biochemistry.
[114] H. Rauvala,et al. Physiological and pathophysiological outcomes of the interactions of HMGB1 with cell surface receptors. , 2010, Biochimica et biophysica acta.
[115] Mary B. Kroetz,et al. Identification of SUMO-interacting proteins by yeast two-hybrid analysis. , 2009, Methods in molecular biology.
[116] M. Willander,et al. Analysis of biomolecules using surface plasmons. , 2009, Methods in molecular biology.
[117] F. Klein,et al. Analysis of protein-DNA interactions during meiosis by quantitative chromatin immunoprecipitation (qChIP). , 2009, Methods in molecular biology.
[118] F. Avilés,et al. Detecting and interfering protein interactions: towards the control of biochemical pathways. , 2009, Current medicinal chemistry.
[119] E. Lewis,et al. Isothermal titration calorimetry: experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions. , 2008, Methods in cell biology.
[120] John D Lambris,et al. Exploring the complement interaction network using surface plasmon resonance. , 2007, Advances in experimental medicine and biology.
[121] F. Bruggeman,et al. The nature of systems biology. , 2007, Trends in microbiology.
[122] Paul A Clemons,et al. Chemical Genomics , 2004, American journal of pharmacogenomics : genomics-related research in drug development and clinical practice.
[123] Raj Kumar,et al. Transactivation functions of the N-terminal domains of nuclear hormone receptors: protein folding and coactivator interactions. , 2003, Molecular endocrinology.
[124] R. Tsien,et al. Monitoring protein conformations and interactions by fluorescence resonance energy transfer between mutants of green fluorescent protein. , 2000, Methods in enzymology.
[125] B. Katz. Structural and mechanistic determinants of affinity and specificity of ligands discovered or engineered by phage display. , 1997, Annual review of biophysics and biomolecular structure.
[126] P. Schuck,et al. Use of surface plasmon resonance to probe the equilibrium and dynamic aspects of interactions between biological macromolecules. , 1997, Annual review of biophysics and biomolecular structure.
[127] Brian Herman,et al. Fluorescence imaging spectroscopy and microscopy , 1996 .