The ubiquitin-proteasome proteolytic pathway

Mammalian cells contain two distinct proteolytic pathways that are involved in different aspects of protein breakdown. Proteins that enter the cell from the extracellular milieu (such as receptor-mediated endocytosed proteins) are degraded in lysosomes. Lysosomal degradation of intracellular proteins occurs mostly under stressed conditions. Nonlysosomal mechanisms are responsible for the highly selective turnover of intracellular proteins that occurs under basal metabolic conditions, but also for some aspects of degradation of intracellular proteins under stress. An important nonlysosomal proteolytic pathway is the ubiquitin system in which proteins are degraded by a 26s protease complex following conjugation by multiple molecules of ubiquitin. The “catalytic core” of the complex is a 20s protease complex also known as the proteasome. Three recent papers, describing three apparently independent biological processes, highlight the role of the ubiquitin-proteasome system as a major, however selective, proteolytic and regulatory pathway. Using specific inhibitors to the proteasome, Rock et al. (1994) demonstrate a role for this protease in the degradation of the major bulk of cellular proteins, but also in specific processing and subsequent presentation of major histocompatibility complex (MHC) class l-restricted antigens. A previous study by the same researchers (Michalek et al., 1993) showed that antigen processing requires the ubiquitin-activating enzyme, El, the first enzyme in the ubiquitin pathway cascade. Thus, it appears that antigen processing is both ubiquitin dependent and proteasome dependent. Palombella et al. (1994) show that maturation of ~105 NF-~6 precursor into the active ~50 subunit of the transcriptional activator also proceeds in a ubiquitin- and proteasomedependent manner. Furthermore, inhibitors to the proteasome block degradation of h&a and thus prevent tumor necrosis factor a (TNFa)-induced activation of mature NFKB and its entry into the nucleus. The two studies clearly demonstrate that the ubiquitin-proteasome system is involved not only in complete destruction of its protein substrates, but also in limited proteolysis and posttranslational processing in which biologically active peptides or fragments are generated. Treier et al. (1994) show that the unstable c-Jut% but not the stable v-Jun, is multiubiquitinated and degraded. The escape of the oncogenic v-Jun from ubiquitin-dependent degradation suggests a novel route to malignant transformation. Presented here is a review of the components, mechanisms of action, and cellular physiology of the ubiquitin-proteasome pathway.

[1]  D. Chowdary,et al.  Accumulation of p53 in a mutant cell line defective in the ubiquitin pathway , 1994, Molecular and cellular biology.

[2]  J. Yewdell,et al.  MHC-encoded proteasome subunits LMP2 and LMP7 are not required for efficient antigen presentation. , 1994, Journal of immunology.

[3]  S. Jentsch The ubiquitin-conjugation system. , 1992, Annual review of genetics.

[4]  J. Monaco,et al.  Homology of proteasome subunits to a major histocompatibility complex-linked LMP gene , 1991, Nature.

[5]  L. Staszewski,et al.  Ubiquitin-dependent c-Jun degradation in vivo is mediated by the δ domain , 1994, Cell.

[6]  A. Hershko,et al.  Methylated ubiquitin inhibits cyclin degradation in clam embryo extracts. , 1991, The Journal of biological chemistry.

[7]  C. Rosen,et al.  Defective mitosis due to a mutation in the gene for a fission yeast 26S protease subunit , 1993, Nature.

[8]  K. Okazaki,et al.  Degradation of Mos by the N‐terminal proline (Pro2)‐dependent ubiquitin pathway on fertilization of Xenopus eggs: possible significance of natural selection for Pro2 in Mos. , 1993, The EMBO journal.

[9]  R. Vierstra,et al.  A major ubiquitin conjugation system in wheat germ extracts involves a 15-kDa ubiquitin-conjugating enzyme (E2) homologous to the yeast UBC4/UBC5 gene products. , 1993, Journal of Biological Chemistry.

[10]  John B. Thomas,et al.  The Drosophila bendless gene encodes a neural protein related to ubiquitin-conjugating enzymes , 1993, Neuron.

[11]  J. P. Jensen,et al.  Activation-dependent ubiquitination of a T cell antigen receptor subunit on multiple intracellular lysines. , 1994, The Journal of biological chemistry.

[12]  A. Hershko,et al.  ATP-dependent incorporation of 20S protease into the 26S complex that degrades proteins conjugated to ubiquitin. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Alexander Varshavsky,et al.  In vivo degradation of a transcriptional regulator: The yeast α2 repressor , 1990, Cell.

[14]  J. Kleinschmidt,et al.  Proteinase yscE, the yeast proteasome/multicatalytic‐multifunctional proteinase: mutants unravel its function in stress induced proteolysis and uncover its necessity for cell survival. , 1991, The EMBO journal.

[15]  S. Jentsch,et al.  Multiple ubiquitin-conjugating enzymes participate in the in vivo degradation of the yeast MATα2 repressor , 1993, Cell.

[16]  R. Vierstra,et al.  Red light-induced formation of ubiquitin-phytochrome conjugates: Identification of possible intermediates of phytochrome degradation. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[17]  F. R. Papa,et al.  The yeast DOA4 gene encodes a deubiquitinating enzyme related to a product of the human tre-2 oncogene , 1993, Nature.

[18]  A. Ciechanover,et al.  Ubiquitin-activating enzyme, E1, is associated with maturation of autophagic vacuoles , 1992, The Journal of cell biology.

[19]  A. Gruhler,et al.  PRE2, highly homologous to the human major histocompatibility complex-linked RING10 gene, codes for a yeast proteasome subunit necessary for chrymotryptic activity and degradation of ubiquitinated proteins. , 1993, The Journal of biological chemistry.

[20]  S. Jentsch,et al.  A protein translocation defect linked to ubiquitin conjugation at the endoplasmic reticulum , 1993, Nature.

[21]  W. Baumeister,et al.  Structural features of the 26 S proteasome complex. , 1993, Journal of molecular biology.

[22]  M. Scheffner,et al.  The HPV-16 E6 and E6-AP complex functions as a ubiquitin-protein ligase in the ubiquitination of p53 , 1993, Cell.

[23]  A. Ciechanover,et al.  The ubiquitin-activating enzyme, E1, is required for stress-induced lysosomal degradation of cellular proteins. , 1991, The Journal of biological chemistry.

[24]  S. Rogers,et al.  Amino acid sequences common to rapidly degraded proteins: the PEST hypothesis. , 1986, Science.

[25]  A. Murray,et al.  Cyclin is degraded by the ubiquitin pathway , 1991, Nature.

[26]  A. Papavassiliou,et al.  Targeted degradation of c-Fos, but not v-Fos, by a phosphorylation-dependent signal on c-Jun. , 1992, Science.

[27]  A. Udvardy,et al.  S. cerevisiae 26S protease mutants arrest cell division in G2/metaphase , 1993, Nature.

[28]  V. Fried,et al.  Activation-induced ubiquitination of the T cell antigen receptor. , 1992, Science.

[29]  Q. Deveraux,et al.  A 26 S protease subunit that binds ubiquitin conjugates. , 1994, The Journal of biological chemistry.

[30]  A. Goldberg,et al.  Demonstration of two distinct high molecular weight proteases in rabbit reticulocytes, one of which degrades ubiquitin conjugates. , 1987, The Journal of biological chemistry.

[31]  I. Ota,et al.  A yeast protein similar to bacterial two-component regulators. , 1993, Science.

[32]  S. Matsufuji,et al.  Ornithine decarboxylase is degraded by the 26S proteasome without ubiquitination , 1992, Nature.

[33]  A. Varshavsky,et al.  The short-lived MAT alpha 2 transcriptional regulator is ubiquitinated in vivo. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Arnold J. Levine,et al.  The E6 oncoprotein encoded by human papillomavirus types 16 and 18 promotes the degradation of p53 , 1990, Cell.

[35]  J. Ruderman,et al.  Both cyclin A delta 60 and B delta 97 are stable and arrest cells in M‐phase, but only cyclin B delta 97 turns on cyclin destruction. , 1991, The EMBO journal.

[36]  A. Ciechanover,et al.  Purification and characterization of a novel species of ubiquitin-carrier protein, E2, that is involved in degradation of non-"N-end rule" protein substrates. , 1994, The Journal of biological chemistry.

[37]  R. Hough,et al.  Purification of two high molecular weight proteases from rabbit reticulocyte lysate. , 1987, The Journal of biological chemistry.

[38]  Clive A. Slaughter,et al.  Proteolytic Processing of Ovalbumin and β-galactosidase by the Proteasome to Yield Antigenic Peptides , 1994 .

[39]  D. Ecker,et al.  A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein. , 1989, Science.

[40]  A. Gotoh,et al.  Ligand-dependent polyubiquitination of c-kit gene product: a possible mechanism of receptor down modulation in M07e cells. , 1994, Blood.

[41]  M. Scheffner,et al.  Cloning and expression of the cDNA for E6-AP, a protein that mediates the interaction of the human papillomavirus E6 oncoprotein with p53 , 1993, Molecular and cellular biology.

[42]  F. Wiebel,et al.  The Pas2 protein essential for peroxisome biogenesis is related to ubiquitin-conjugating enzymes , 1992, Nature.

[43]  A. Varshavsky The N-end rule , 1992, Cell.

[44]  A. Ciechanover,et al.  The ubiquitin system for protein degradation. , 1992, Annual review of biochemistry.

[45]  J. Kinet,et al.  Cell surface control of the multiubiquitination and deubiquitination of high‐affinity immunoglobulin E receptors. , 1993, The EMBO journal.

[46]  C. Heldin,et al.  Ligand-induced polyubiquitination of the platelet-derived growth factor beta-receptor. , 1992, The Journal of biological chemistry.

[47]  A. Hershko,et al.  Components of a system that ligates cyclin to ubiquitin and their regulation by the protein kinase cdc2. , 1994, The Journal of biological chemistry.

[48]  K D Wilkinson,et al.  The neuron-specific protein PGP 9.5 is a ubiquitin carboxyl-terminal hydrolase. , 1989, Science.

[49]  A. Varshavsky,et al.  N-recognin/Ubc2 interactions in the N-end rule pathway. , 1993, The Journal of biological chemistry.

[50]  A. Ciechanover,et al.  Degradation of the tumor suppressor protein p53 by the ubiquitin-mediated proteolytic system requires a novel species of ubiquitin-carrier protein, E2. , 1994, The Journal of biological chemistry.

[51]  A. Goldberg,et al.  Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules , 1994, Cell.

[52]  S. Desiderio,et al.  Regulation of V(D)J recombination activator protein RAG-2 by phosphorylation. , 1993, Science.

[53]  Tom Maniatis,et al.  The ubiquitinproteasome pathway is required for processing the NF-κB1 precursor protein and the activation of NF-κB , 1994, Cell.

[54]  A. Goldberg,et al.  Gamma-interferon and expression of MHC genes regulate peptide hydrolysis by proteasomes. , 1993, Nature.

[55]  A. Varshavsky,et al.  Degradation of G alpha by the N-end rule pathway. , 1994, Science.

[56]  A. Varshavsky,et al.  The recognition component of the N‐end rule pathway. , 1990, The EMBO journal.

[57]  M. Rechsteiner,et al.  The multicatalytic and 26 S proteases. , 1993, The Journal of biological chemistry.

[58]  A. Hershko,et al.  Ubiquitin C-terminal hydrolase activity associated with the 26 S protease complex. , 1993, The Journal of biological chemistry.

[59]  A. Goldberg,et al.  A role for the ubiquitin-dependent proteolytic pathway in MHC class l-restricted antigen presentation , 1993, Nature.

[60]  A. Goldberg,et al.  The proteasome (multicatalytic protease) is a component of the 1500-kDa proteolytic complex which degrades ubiquitin-conjugated proteins. , 1990, The Journal of biological chemistry.

[61]  R. Kölling,et al.  The ABC‐transporter Ste6 accumulates in the plasma membrane in a ubiquitinated form in endocytosis mutants. , 1994, The EMBO journal.