GABA Modulating Bacteria of the Human Gut Microbiota

[1]  A. Neyrinck,et al.  High-fat diet induces depression-like behaviour in mice associated with changes in microbiome, neuropeptide Y, and brain metabolome , 2019, Nutritional neuroscience.

[2]  Rick L. Stevens,et al.  KBase: The United States Department of Energy Systems Biology Knowledgebase , 2018, Nature Biotechnology.

[3]  Rob Knight,et al.  American Gut: an Open Platform for Citizen Science Microbiome Research , 2018, mSystems.

[4]  A. Kostic,et al.  Diet, Genetics, and the Gut Microbiome Drive Dynamic Changes in Plasma Metabolites. , 2018, Cell reports.

[5]  J. Clardy,et al.  Quinones are growth factors for the human gut microbiota , 2017, Microbiome.

[6]  Evgeni Levin,et al.  Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition. , 2017, Cell metabolism.

[7]  Jennifer S. Labus,et al.  Brain Structure and Response to Emotional Stimuli as Related to Gut Microbial Profiles in Healthy Women , 2017, Psychosomatic medicine.

[8]  J. Overmann,et al.  Cultured microbes represent a substantial fraction of the human and mouse gut microbiota , 2017, Gut microbes.

[9]  Jose A Navas-Molina,et al.  Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns , 2017, mSystems.

[10]  Jose A Navas-Molina,et al.  Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping , 2017, mSystems.

[11]  E. Hsiao,et al.  Interactions between the microbiota, immune and nervous systems in health and disease , 2017, Nature Neuroscience.

[12]  Y. Benno,et al.  Colonic Absorption of Low-Molecular-Weight Metabolites Influenced by the Intestinal Microbiome: A Pilot Study , 2017, PloS one.

[13]  Rida Assaf,et al.  Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center , 2016, Nucleic Acids Res..

[14]  N. Oezguen,et al.  GABA‐producing Bifidobacterium dentium modulates visceral sensitivity in the intestine , 2016, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[15]  M. Horn,et al.  IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies , 2016, Scientific Reports.

[16]  Nitin Kumar,et al.  Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation , 2016, Nature.

[17]  Greg J. Stanisz,et al.  Magnetic resonance spectroscopy reveals oral Lactobacillus promotion of increases in brain GABA, N-acetyl aspartate and glutamate , 2016, NeuroImage.

[18]  G. Panagiotou,et al.  A Molecular-Level Landscape of Diet-Gut Microbiome Interactions: Toward Dietary Interventions Targeting Bacterial Genes , 2015, mBio.

[19]  María Martín,et al.  UniProt: A hub for protein information , 2015 .

[20]  Didier Raoult,et al.  The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota , 2015, Clinical Microbiology Reviews.

[21]  The Uniprot Consortium,et al.  UniProt: a hub for protein information , 2014, Nucleic Acids Res..

[22]  Conor Liston,et al.  Default Mode Network Mechanisms of Transcranial Magnetic Stimulation in Depression , 2014, Biological Psychiatry.

[23]  K. Schleifer,et al.  Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences , 2014, Nature Reviews Microbiology.

[24]  Alexandros Stamatakis,et al.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..

[25]  D. Haller,et al.  Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine. , 2013, International journal of systematic and evolutionary microbiology.

[26]  Colin N. Dewey,et al.  De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.

[27]  Q. Lin.  Submerged fermentation of Lactobacillus rhamnosus YS9 for γ-aminobutyric acid (GABA) production , 2013, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].

[28]  K. Karatzas,et al.  Role of glutamate metabolism in bacterial responses towards acid and other stresses , 2013, Journal of applied microbiology.

[29]  P. O’Toole,et al.  γ‐Aminobutyric acid production by culturable bacteria from the human intestine , 2012, Journal of applied microbiology.

[30]  B. Birren,et al.  The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing , 2012, PloS one.

[31]  M. Greicius,et al.  Decoding subject-driven cognitive states with whole-brain connectivity patterns. , 2012, Cerebral cortex.

[32]  John F. Cryan,et al.  Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve , 2011, Proceedings of the National Academy of Sciences.

[33]  B Luscher,et al.  The GABAergic deficit hypothesis of major depressive disorder , 2011, Molecular Psychiatry.

[34]  J. Faith,et al.  Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice , 2011, Proceedings of the National Academy of Sciences.

[35]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[36]  J. Crawford,et al.  Siderophores from neighboring organisms promote the growth of uncultured bacteria. , 2010, Chemistry & biology.

[37]  J. Carlier,et al.  Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Séguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov. , 2010, International journal of systematic and evolutionary microbiology.

[38]  Miriam L. Land,et al.  Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .

[39]  Catie Chang,et al.  Effects of model-based physiological noise correction on default mode network anti-correlations and correlations , 2009, NeuroImage.

[40]  M. Mintun,et al.  The default mode network and self-referential processes in depression , 2009, Proceedings of the National Academy of Sciences.

[41]  Brent L. Hughes,et al.  Prefrontal-Subcortical Pathways Mediating Successful Emotion Regulation , 2008, Neuron.

[42]  Rick L. Stevens,et al.  The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.

[43]  E. Koechlin,et al.  Anterior Prefrontal Function and the Limits of Human Decision-Making , 2007, Science.

[44]  G. Glover,et al.  Resting-State Functional Connectivity in Major Depression: Abnormally Increased Contributions from Subgenual Cingulate Cortex and Thalamus , 2007, Biological Psychiatry.

[45]  C. Francke,et al.  How Phosphotransferase System-Related Protein Phosphorylation Regulates Carbohydrate Metabolism in Bacteria , 2006, Microbiology and Molecular Biology Reviews.

[46]  H. Mori,et al.  Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. , 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.

[47]  Vinod Menon,et al.  Functional connectivity in the resting brain: A network analysis of the default mode hypothesis , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[48]  R. Davidson,et al.  Depression: perspectives from affective neuroscience. , 2002, Annual review of psychology.

[49]  J. Wixon.  Featured organism: Danio rerio, the zebrafish , 2000, Yeast.

[50]  D. Kell,et al.  The Kyoto Encyclopedia of Genes and Genomes—KEGG , 2000, Yeast.

[51]  C. Baird,et al.  The pilot study. , 2000, Orthopedic nursing.

[52]  J. Fallingborg,et al.  Intraluminal pH of the human gastrointestinal tract. , 1999, Danish medical bulletin.

[53]  P. Soeters,et al.  γ-Aminobutyric acid production in small and large intestine of normal and germfree Wistar rats , 1987 .

[54]  P. Soeters,et al.  gamma-Aminobutyric acid production in small and large intestine of normal and germ-free Wistar rats. Influence of food intake and intestinal flora. , 1987, Gastroenterology.

[55]  P. Sneath,et al.  Measurement of Taxonomic Criteria [Abridged] , 1972, Proceedings of the Royal Society of Medicine.

[56]  T. Stadtman,et al.  METABOLISM OF ω-AMINO ACIDS , 1960 .

[57]  M. Hamilton.  A RATING SCALE FOR DEPRESSION , 1960, Journal of neurology, neurosurgery, and psychiatry.

[58]  T. Stadtman,et al.  Metabolism of omega-amino acids. I. Fermentation of gamma-aminobutyric acid by Clostridium aminobutyricum n. sp. , 1960, Journal of bacteriology.