Perspectives of RAS and RHEB GTPase Signaling Pathways in Regenerating Brain Neurons

Cellular activation of RAS GTPases into the GTP-binding “ON” state is a key switch for regulating brain functions. Molecular protein structural elements of rat sarcoma (RAS) and RAS homolog protein enriched in brain (RHEB) GTPases involved in this switch are discussed including their subcellular membrane localization for triggering specific signaling pathways resulting in regulation of synaptic connectivity, axonal growth, differentiation, migration, cytoskeletal dynamics, neural protection, and apoptosis. A beneficial role of neuronal H-RAS activity is suggested from cellular and animal models of neurodegenerative diseases. Recent experiments on optogenetic regulation offer insights into the spatiotemporal aspects controlling RAS/mitogen activated protein kinase (MAPK) or phosphoinositide-3 kinase (PI3K) pathways. As optogenetic manipulation of cellular signaling in deep brain regions critically requires penetration of light through large distances of absorbing tissue, we discuss magnetic guidance of re-growing axons as a complementary approach. In Parkinson’s disease, dopaminergic neuronal cell bodies degenerate in the substantia nigra. Current human trials of stem cell-derived dopaminergic neurons must take into account the inability of neuronal axons navigating over a large distance from the grafted site into striatal target regions. Grafting dopaminergic precursor neurons directly into the degenerating substantia nigra is discussed as a novel concept aiming to guide axonal growth by activating GTPase signaling through protein-functionalized intracellular magnetic nanoparticles responding to external magnets.

[1]  Alfred Wittinghofer,et al.  GEFs and GAPs: Critical Elements in the Control of Small G Proteins , 2007, Cell.

[2]  Hongyan Zou,et al.  B-RAF kinase drives developmental axon growth and promotes axon regeneration in the injured mature CNS , 2014, The Journal of experimental medicine.

[3]  C. Brangwynne,et al.  Protein phase separation provides long-term memory of transient spatial stimuli , 2018, bioRxiv.

[4]  W. Kirsten,et al.  Morphologic responses to a murine erythroblastosis virus. , 1967, Journal of the National Cancer Institute.

[5]  Polina Anikeeva,et al.  Wireless magnetothermal deep brain stimulation , 2015, Science.

[6]  A. Davies,et al.  Role of PI 3-kinase, Akt and Bcl-2–related proteins in sustaining the survival of neurotrophic factor–independent adult sympathetic neurons , 2001, The Journal of cell biology.

[7]  Roberto Cingolani,et al.  Subnanometer local temperature probing and remotely controlled drug release based on azo-functionalized iron oxide nanoparticles. , 2013, Nano letters.

[8]  N. Sonenberg,et al.  Upstream and downstream of mTOR. , 2004, Genes & development.

[9]  M. Nakafuku,et al.  Identification of AF-6 and Canoe as Putative Targets for Ras (*) , 1996, The Journal of Biological Chemistry.

[10]  Daniel J. Klionsky,et al.  Autophagy: from phenomenology to molecular understanding in less than a decade , 2007, Nature Reviews Molecular Cell Biology.

[11]  A. Chalmers,et al.  The N-terminal RASSF family: a new group of Ras-association-domain-containing proteins, with emerging links to cancer formation. , 2010, The Biochemical journal.

[12]  A. Teleman,et al.  Regulation of TORC1 in Response to Amino Acid Starvation via Lysosomal Recruitment of TSC2 , 2014, Cell.

[13]  W. Kolch,et al.  Raf family kinases: old dogs have learned new tricks. , 2011, Genes & cancer.

[14]  B. Kuhlman,et al.  Tuning the Binding Affinities and Reversion Kinetics of a Light Inducible Dimer Allows Control of Transmembrane Protein Localization. , 2016, Biochemistry.

[15]  G. Johnson,et al.  B-Raf-dependent regulation of the MEK-1/mitogen-activated protein kinase pathway in PC12 cells and regulation by cyclic AMP , 1994, Molecular and cellular biology.

[16]  G. Gallo,et al.  Axon guidance: GTPases help axons reach their targets , 1998, Current Biology.

[17]  S. Snyder,et al.  Rheb inhibits protein synthesis by activating the PERK‐eIF2α signaling cascade , 2015, Cell reports.

[18]  Ras plasma membrane signalling platforms. , 2005 .

[19]  R. Heumann,et al.  Enhancement of dopaminergic properties and protection mediated by neuronal activation of Ras in mouse ventral mesencephalic neurones , 2007, The European journal of neuroscience.

[20]  Jinwoo Cheon,et al.  Magnetic nanoparticles for ultrafast mechanical control of inner ear hair cells. , 2014, ACS nano.

[21]  J. Guan,et al.  Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy. , 2009, Molecular biology of the cell.

[22]  Adiel Cohen,et al.  PRAS40 and PRR5-Like Protein Are New mTOR Interactors that Regulate Apoptosis , 2007, PloS one.

[23]  M. White,et al.  Ral GTPases: corrupting the exocyst in cancer cells. , 2005, Trends in cell biology.

[24]  P. Lampe,et al.  Characterization of the Mitogen-activated Protein Kinase Phosphorylation Sites on the Connexin-43 Gap Junction Protein (*) , 1996, The Journal of Biological Chemistry.

[25]  M. You,et al.  Bnip3 Mediates the Hypoxia-induced Inhibition on Mammalian Target of Rapamycin by Interacting with Rheb* , 2007, Journal of Biological Chemistry.

[26]  Alicia J. El Haj,et al.  Remote Activation of the Wnt/β-Catenin Signalling Pathway Using Functionalised Magnetic Particles , 2015, PloS one.

[27]  Yang Liu,et al.  Nanoscale Optomechanical Actuators for Controlling Mechanotransduction in Living Cells , 2015, Nature Methods.

[28]  K. Kaibuchi,et al.  Role of CRMP-2 in neuronal polarity. , 2004, Journal of neurobiology.

[29]  J. Fawcett The Paper that Restarted Modern Central Nervous System Axon Regeneration Research , 2018, Trends in Neurosciences.

[30]  Y. Jan,et al.  Regulation of axon regeneration by the RNA repair/splicing pathway , 2015, Nature Neuroscience.

[31]  Brian Kuhlman,et al.  Cells lay their own tracks – optogenetic Cdc42 activation stimulates fibronectin deposition supporting directed migration , 2017, Journal of Cell Science.

[32]  V. Stambolic,et al.  Localization of Rheb to the endomembrane is critical for its signaling function. , 2006, Biochemical and biophysical research communications.

[33]  Lewis C Cantley,et al.  The phosphoinositide 3-kinase pathway. , 2002, Science.

[34]  F. Mastaglia,et al.  Co-regulation of survival of motor neuron and Bcl-xL expression: Implications for neuroprotection in spinal muscular atrophy , 2012, Neuroscience.

[35]  Marc Bickle,et al.  The Yeast Phosphatidylinositol Kinase Homolog TOR2 Activates RHO1 and RHO2 via the Exchange Factor ROM2 , 1997, Cell.

[36]  C. Herrmann,et al.  Kinetic characterization of apoptotic Ras signaling through Nore1-MST1 complex formation , 2017, Biological chemistry.

[37]  F. Tamanoi,et al.  Recent progress in the study of the Rheb family GTPases. , 2014, Cellular signalling.

[38]  M. Tuszynski,et al.  Induction of corticospinal regeneration by lentiviral trkB-induced Erk activation , 2009, Proceedings of the National Academy of Sciences.

[39]  O. Steward,et al.  PTEN Deletion Enhances the Regenerative Ability of Adult Corticospinal Neurons , 2010, Nature Neuroscience.

[40]  Joseph Avruch,et al.  Rheb Binds and Regulates the mTOR Kinase , 2005, Current Biology.

[41]  C. Koh Rho GTPases and Their Regulators in Neuronal Functions and Development , 2007, Neurosignals.

[42]  A. Curtis,et al.  Surface modified superparamagnetic nanoparticles for drug delivery: Interaction studies with human fibroblasts in culture , 2004, Journal of materials science. Materials in medicine.

[43]  R. Roth,et al.  PRAS40 Regulates mTORC1 Kinase Activity by Functioning as a Direct Inhibitor of Substrate Binding* , 2007, Journal of Biological Chemistry.

[44]  Harald Janovjak,et al.  Spatio‐temporally precise activation of engineered receptor tyrosine kinases by light , 2014, The EMBO journal.

[45]  D. Kaplan,et al.  The TrkB-Shc Site Signals Neuronal Survival and Local Axon Growth via MEK and PI3-Kinase , 2000, Neuron.

[46]  J. John,et al.  ras p21 protein promotes survival and fiber outgrowth of cultured embryonic neurons , 1989, Neuron.

[47]  Jinwoo Cheon,et al.  A magnetic switch for the control of cell death signalling in in vitro and in vivo systems. , 2012, Nature materials.

[48]  T. Ritz,et al.  Photoreceptor-based magnetoreception: optimal design of receptor molecules, cells, and neuronal processing , 2010, Journal of The Royal Society Interface.

[49]  Y. Rao,et al.  Both the Establishment and the Maintenance of Neuronal Polarity Require Active Mechanisms Critical Roles of GSK-3β and Its Upstream Regulators , 2005, Cell.

[50]  M. Dahan,et al.  Magnetogenetic control of protein gradients inside living cells with high spatial and temporal resolution. , 2015, Nano letters.

[51]  M. MacDonald,et al.  Huntingtin promotes mTORC1 signaling in the pathogenesis of Huntington’s disease , 2014, Science Signaling.

[52]  Alicia J El Haj,et al.  Controlled differentiation of human bone marrow stromal cells using magnetic nanoparticle technology. , 2010, Tissue engineering. Part A.

[53]  A. Wolfman,et al.  A cytosolic protein catalyzes the release of GDP from p21ras. , 1990, Science.

[54]  Jeremy N. Skepper,et al.  α-Synuclein Is Degraded by Both Autophagy and the Proteasome* , 2003, Journal of Biological Chemistry.

[55]  Yukichi Tanaka,et al.  Germline mutations in HRAS proto-oncogene cause Costello syndrome , 2005, Nature Genetics.

[56]  A. Hall,et al.  Ral GTPases regulate neurite branching through GAP-43 and the exocyst complex , 2005, The Journal of cell biology.

[57]  J. Engelman,et al.  The PI3K pathway as drug target in human cancer. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[58]  R. Heumann,et al.  Oxygen causes cell death in the developing brain , 2004, Neurobiology of Disease.

[59]  M. Dahan,et al.  Engineered Ferritin for Magnetogenetic Manipulation of Proteins and Organelles Inside Living Cells , 2017, Advanced materials.

[60]  M. Barbacid,et al.  RAS oncogenes: the first 30 years , 2003, Nature Reviews Cancer.

[61]  R. Oppenheim,et al.  Neurotrophic Survival Molecules for Motoneurons: An Embarrassment of Riches , 1996, Neuron.

[62]  Jian Zhong,et al.  RAS and downstream RAF-MEK and PI3K-AKT signaling in neuronal development, function and dysfunction , 2016, Biological chemistry.

[63]  Ning Wang,et al.  Transcription upregulation via force-induced direct stretching of chromatin , 2016, Nature materials.

[64]  Yong Zhou,et al.  Ras nanoclusters: Versatile lipid-based signaling platforms. , 2015, Biochimica et biophysica acta.

[65]  Orion D. Weiner,et al.  Illuminating cell signalling with optogenetic tools , 2014, Nature Reviews Molecular Cell Biology.

[66]  John G. Collard,et al.  Expression of Tiam-1 in the developing brain suggests a role for the Tiam-1-Rac signaling pathway in cell migration and neurite outgrowth. , 1997, Molecular and cellular neurosciences.

[67]  J. Christie,et al.  LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[68]  S. Dedhar,et al.  NGF-Induced Axon Growth Is Mediated by Localized Inactivation of GSK-3β and Functions of the Microtubule Plus End Binding Protein APC , 2004, Neuron.

[69]  Jared E. Toettcher,et al.  Using Optogenetics to Interrogate the Dynamic Control of Signal Transmission by the Ras/Erk Module , 2013, Cell.

[70]  Yan Zhang,et al.  Neurons with Multiple Axons Have Functional Axon Initial Segments , 2017, Neuroscience Bulletin.

[71]  R. Heumann,et al.  Ras and Rheb Signaling in Survival and Cell Death , 2013, Cancers.

[72]  W. Heo,et al.  Spatiotemporal control of fibroblast growth factor receptor signals by blue light. , 2014, Chemistry & biology.

[73]  N. Blüthgen,et al.  Effects of RAF inhibitors on PI3K/AKT signalling depend on mutational status of the RAS/RAF signalling axis , 2016, Oncotarget.

[74]  L. Swiech,et al.  Mammalian Target of Rapamycin Complex 1 (mTORC1) and 2 (mTORC2) Control the Dendritic Arbor Morphology of Hippocampal Neurons* , 2012, The Journal of Biological Chemistry.

[75]  Satoshi Morita,et al.  Human iPS cell-derived dopaminergic neurons function in a primate Parkinson’s disease model , 2017, Nature.

[76]  R. Xavier,et al.  Identification of a Novel Ras-Regulated Proapoptotic Pathway , 2002, Current Biology.

[77]  R. Kopito,et al.  HDAC6 and Microtubules Are Required for Autophagic Degradation of Aggregated Huntingtin* , 2005, Journal of Biological Chemistry.

[78]  K. Ye,et al.  Phosphoinositide 3-Kinase Enhancer Regulates Neuronal Dendritogenesis and Survival in Neocortex , 2011, The Journal of Neuroscience.

[79]  Donald E Ingber,et al.  Nanomagnetic actuation of receptor-mediated signal transduction. , 2008, Nature nanotechnology.

[80]  M. Coppey,et al.  Subcellular control of Rac-GTPase signalling by magnetogenetic manipulation inside living cells. , 2013, Nature nanotechnology.

[81]  V. Cabuil,et al.  Nanoparticle-mediated delivery of bleomycin. , 2010, Angewandte Chemie.

[82]  K. Deisseroth Optogenetics: 10 years of microbial opsins in neuroscience , 2015, Nature Neuroscience.

[83]  D. Alessi,et al.  Identification of Protor as a novel Rictor-binding component of mTOR complex-2. , 2007, The Biochemical journal.

[84]  M. Kitamura,et al.  Involvement of Selective Reactive Oxygen Species Upstream of Proapoptotic Branches of Unfolded Protein Response* , 2008, Journal of Biological Chemistry.

[85]  M. Filbin,et al.  Neuronal Cyclic AMP Controls the Developmental Loss in Ability of Axons to Regenerate , 2001, The Journal of Neuroscience.

[86]  B. Cui,et al.  Optogenetic control of intracellular signaling pathways. , 2015, Trends in biotechnology.

[87]  M. Chalfie,et al.  GEFs and Rac GTPases control directional specificity of neurite extension along the anterior–posterior axis , 2016, Proceedings of the National Academy of Sciences.

[88]  H. Kiyama,et al.  Akt/Protein Kinase B Prevents Injury-Induced Motoneuron Death and Accelerates Axonal Regeneration , 2000, The Journal of Neuroscience.

[89]  Hiromi Suzuki,et al.  Optogenetic control of cell differentiation in channelrhodopsin-2-expressing OS3, a bipotential glial progenitor cell line , 2017, Neurochemistry International.

[90]  M. Filbin Recapitulate development to promote axonal regeneration: good or bad approach? , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.

[91]  H. Donninger,et al.  Ras signaling through RASSF proteins. , 2016, Seminars in cell & developmental biology.

[92]  W. Hauswirth,et al.  Extracellular signal‐regulated kinase 1/2 mediates survival, but not axon regeneration, of adult injured central nervous system neurons in vivo , 2005, Journal of neurochemistry.

[93]  Jeremy P. Sauer,et al.  Remote regulation of glucose homeostasis in mice using genetically encoded nanoparticles , 2014, Nature Medicine.

[94]  Yishi Jin,et al.  Calcium and Cyclic AMP Promote Axonal Regeneration in Caenorhabditis elegans and Require DLK-1 Kinase , 2010, The Journal of Neuroscience.

[95]  Lukas C. Kapitein,et al.  Optogenetic control of organelle transport and positioning , 2015, Nature.

[96]  Matias D. Zurbriggen,et al.  Synthesis of phycocyanobilin in mammalian cells. , 2013, Chemical communications.

[97]  J. Blenis,et al.  Molecular mechanisms of mTOR-mediated translational control , 2009, Nature Reviews Molecular Cell Biology.

[98]  Brian Kuhlman,et al.  Correlating in Vitro and in Vivo Activities of Light-Inducible Dimers: A Cellular Optogenetics Guide. , 2016, ACS synthetic biology.

[99]  Ravi S Kane,et al.  Optogenetic protein clustering and signaling activation in mammalian cells , 2013, Nature Methods.

[100]  S. Pervaiz,et al.  Crosstalk between Bcl-2 family and Ras family small GTPases: potential cell fate regulation? , 2013, Front. Oncol..

[101]  G. Drewes,et al.  Mitogen activated protein (MAP) kinase transforms tau protein into an Alzheimer‐like state. , 1992, The EMBO journal.

[102]  Vishnu V. Krishnamurthy,et al.  Reversible optogenetic control of kinase activity during differentiation and embryonic development , 2016, Development.

[103]  Maxwell Z. Wilson,et al.  Optogenetic Control of Ras/Erk Signaling Using the Phy-PIF System. , 2017, Methods in molecular biology.

[104]  L. Cantley,et al.  Spatial Control of the TSC Complex Integrates Insulin and Nutrient Regulation of mTORC1 at the Lysosome , 2014, Cell.

[105]  R. Heumann,et al.  Protection of Oligodendrocytes Through Neuronal Overexpression of the Small GTPase Ras in Hyperoxia-Induced Neonatal Brain Injury , 2018, Front. Neurol..

[106]  Dino Di Carlo,et al.  Magnetic nanoparticle-mediated massively-parallel mechanical modulation of single-cell behavior , 2012, Nature Methods.

[107]  Eric R. Kandel,et al.  Activated CREB Is Sufficient to Overcome Inhibitors in Myelin and Promote Spinal Axon Regeneration In Vivo , 2004, Neuron.

[108]  C. Saura,et al.  Ras Protein Activation Is a Key Event in Activity-dependent Survival of Cerebellar Granule Neurons* , 2014, The Journal of Biological Chemistry.

[109]  Michael Z. Lin,et al.  Optical Control of Protein Activity by Fluorescent Protein Domains , 2012, Science.

[110]  P. Cullen,et al.  Control of Ras cycling by Ca2+ , 2003, FEBS letters.

[111]  G. Crabtree,et al.  Rapamycin selectively inhibits interleukin-2 activation of p70 S6 kinase , 1992, Nature.

[112]  C. Reis,et al.  Mammalian Sterile20-like Kinases: Signalings and Roles in Central Nervous System , 2018, Aging and disease.

[113]  Philip R. Cohen,et al.  Identification of a latent MAP kinase kinase kinase in PC12 cells as B‐raf , 1994, FEBS letters.

[114]  D. Provance,et al.  Absence of the tight junctional protein AF-6 disrupts epithelial cell–cell junctions and cell polarity during mouse development , 1999, Current Biology.

[115]  A. Wittinghofer,et al.  Biochemical characterisation of TCTP questions its function as a guanine nucleotide exchange factor for Rheb , 2008, FEBS letters.

[116]  J. Goldberg,et al.  Multiple transcription factor families regulate axon growth and regeneration , 2011, Developmental neurobiology.

[117]  S. Strittmatter,et al.  Inhibition of Poly-ADP-Ribosylation Fails to Increase Axonal Regeneration or Improve Functional Recovery after Adult Mammalian CNS Injury , 2016, eNeuro.

[118]  Maxime Dahan,et al.  Magnetic control of cellular processes using biofunctional nanoparticles , 2017, Chemical science.

[119]  Brian Kuhlman,et al.  Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins , 2014, Proceedings of the National Academy of Sciences.

[120]  Cody J. Smith,et al.  Genetically targeted magnetic control of the nervous system , 2016, Nature Neuroscience.

[121]  Malin Parmar,et al.  Human Trials of Stem Cell-Derived Dopamine Neurons for Parkinson's Disease: Dawn of a New Era. , 2017, Cell stem cell.

[122]  K. White,et al.  Cell death in development: Signaling pathways and core mechanisms. , 2015, Seminars in cell & developmental biology.

[123]  M. White,et al.  RalB Mobilizes the Exocyst To Drive Cell Migration , 2006, Molecular and Cellular Biology.

[124]  G. Pfeifer,et al.  The RASSF proteins in cancer; from epigenetic silencing to functional characterization. , 2009, Biochimica et biophysica acta.

[125]  T. Ichisaka,et al.  Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors , 2007, Cell.

[126]  Ronald M. Lindsay,et al.  Neuron saving schemes , 1995, Nature.

[127]  M. Kaul,et al.  BAG1 Over‐expression in Brain Protects Against Stroke , 2003, Brain pathology.

[128]  L. Cantley,et al.  Regulation of mTORC1 by PI3K signaling. , 2015, Trends in cell biology.

[129]  L. Premkumar,et al.  TRP channels and analgesia. , 2013, Life sciences.

[130]  D. Palmer,et al.  NORE1A induction by membrane-bound CD40L (mCD40L) contributes to CD40L-induced cell death and G1 growth arrest in p21-mediated mechanism , 2016, Cell Death and Disease.

[131]  E. Feinstein Ral-GTPases: good chances for a long-lasting fame , 2005, Oncogene.

[132]  A. Toker Signaling through protein kinase C. , 1998, Frontiers in bioscience : a journal and virtual library.

[133]  P. Worley,et al.  Distinct roles of Rheb and Raptor in activating mTOR complex 1 for the self-renewal of hematopoietic stem cells. , 2018, Biochemical and biophysical research communications.

[134]  Erin E. Johnson,et al.  Active Ras Triggers Death in Glioblastoma Cells through Hyperstimulation of Macropinocytosis , 2008, Molecular Cancer Research.

[135]  G. Crabtree,et al.  Rapamycin-FKBP specifically blocks growth-dependent activation of and signaling by the 70 kd S6 protein kinases , 1992, Cell.

[136]  P. De Camilli,et al.  Optogenetic control of phosphoinositide metabolism , 2012, Proceedings of the National Academy of Sciences.

[137]  Jacob D. Jaffe,et al.  mSin1 Is Necessary for Akt/PKB Phosphorylation, and Its Isoforms Define Three Distinct mTORC2s , 2006, Current Biology.

[138]  S. R. Datta,et al.  Transcription-dependent and -independent control of neuronal survival by the PI3K–Akt signaling pathway , 2001, Current Opinion in Neurobiology.

[139]  G. Gambetta,et al.  Genetic engineering of phytochrome biosynthesis in bacteria , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[140]  M. Marshall,et al.  Ras target proteins in eukaryotic cells , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[141]  R. Heumann,et al.  Lethal Factor Domain-Mediated Delivery of Nurr1 Transcription Factor Enhances Tyrosine Hydroxylase Activity and Protects from Neurotoxin-Induced Degeneration of Dopaminergic Cells , 2018, Molecular Neurobiology.

[142]  V. Dietz,et al.  From the Rodent Spinal Cord Injury Model to Human Application: Promises and Challenges. , 2017, Journal of neurotrauma.

[143]  A. Alpár,et al.  Enhanced Ras activity in pyramidal neurons induces cellular hypertrophy and changes in afferent and intrinsic connectivity in synRas mice , 2004, International Journal of Developmental Neuroscience.

[144]  U. Rapp,et al.  Ras oncogenes and their downstream targets. , 2007, Biochimica et biophysica acta.

[145]  B. Cui,et al.  Light-Mediated Kinetic Control Reveals the Temporal Effect of the Raf/MEK/ERK Pathway in PC12 Cell Neurite Outgrowth , 2014, PloS one.

[146]  G. Landreth,et al.  The mitogen-activated protein kinase cascade is activated by B-Raf in response to nerve growth factor through interaction with p21ras , 1994, Molecular and cellular biology.

[147]  A. Aguayo,et al.  Axonal elongation into peripheral nervous system "bridges" after central nervous system injury in adult rats. , 1981, Science.

[148]  S. Baksh,et al.  RASSF tumor suppressor gene family: Biological functions and regulation , 2014, FEBS letters.

[149]  W. Hauswirth,et al.  Extracellular signal‐regulated kinases 1/2 are required for adult retinal ganglion cell axon regeneration induced by fibroblast growth factor‐2 , 2006, Journal of neuroscience research.

[150]  J. Avruch,et al.  Tumor Suppressor Ras Association Domain Family 5 (RASSF5/NORE1) Mediates Death Receptor Ligand-induced Apoptosis* , 2010, The Journal of Biological Chemistry.

[151]  S. Dedhar,et al.  Role of Integrin-Linked Kinase in Nerve Growth Factor-Stimulated Neurite Outgrowth , 2003, The Journal of Neuroscience.

[152]  R. Heumann,et al.  Regrowing the Adult Brain: NF-κB Controls Functional Circuit Formation and Tissue Homeostasis in the Dentate Gyrus , 2011, PloS one.

[153]  S. Strittmatter,et al.  Nogo: A Molecular Determinant of Axonal Growth and Regeneration , 2001, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[154]  Simon Melov,et al.  Endogenous mitochondrial oxidative stress: neurodegeneration, proteomic analysis, specific respiratory chain defects, and efficacious antioxidant therapy in superoxide dismutase 2 null mice , 2003, Journal of neurochemistry.

[155]  R. Burke,et al.  Rheb GTPase Regulates β-Secretase Levels and Amyloid β Generation* , 2013, The Journal of Biological Chemistry.

[156]  M. Ehlers,et al.  Rapid blue light induction of protein interactions in living cells , 2010, Nature Methods.

[157]  M. Höltje,et al.  Rho-independent stimulation of axon outgrowth and activation of the ERK and Akt signaling pathways by C3 transferase in sensory neurons , 2012, Front. Cell. Neurosci..

[158]  R. Heumann,et al.  Regulation and function of neuronal GTP‐Ras in facial motor nerve regeneration , 2009, Journal of neurochemistry.

[159]  H. Ichijo,et al.  Oxidative Stress-Induced Diseases via the ASK1 Signaling Pathway , 2012, International journal of cell biology.

[160]  C. Dotti,et al.  The role of local actin instability in axon formation. , 1999, Science.

[161]  David M. Sabatini,et al.  The Rag GTPases Bind Raptor and Mediate Amino Acid Signaling to mTORC1 , 2008, Science.

[162]  Jonathan A. Cooper,et al.  Rap1 promotes cell spreading by localizing Rac guanine nucleotide exchange factors , 2004, The Journal of cell biology.

[163]  M. Goldberger,et al.  Anatomical plasticity and sparing of function after spinal cord damage in neonatal cats. , 1982, Science.

[164]  Kazuhiro Aoki,et al.  Propagating Wave of ERK Activation Orients Collective Cell Migration. , 2017, Developmental cell.

[165]  Heng Huang,et al.  Remote control of ion channels and neurons through magnetic-field heating of nanoparticles. , 2010, Nature nanotechnology.

[166]  A. Markus,et al.  Raf and Akt Mediate Distinct Aspects of Sensory Axon Growth , 2002, Neuron.

[167]  B. Kholodenko,et al.  It takes two to tango--signalling by dimeric Raf kinases. , 2013, Molecular bioSystems.

[168]  B. D. Lynn,et al.  The effector and scaffolding proteins AF6 and MUPP1 interact with connexin36 and localize at gap junctions that form electrical synapses in rodent brain , 2012, The European journal of neuroscience.

[169]  Zhigang He,et al.  Promoting Axon Regeneration in the Adult CNS by Modulation of the PTEN/mTOR Pathway , 2008, Science.

[170]  E. Shooter,et al.  Ras activation of a Rac1 exchange factor, Tiam1, mediates neurotrophin-3-induced Schwann cell migration. , 2005 .

[171]  J. Urano,et al.  Characterization of Rheb functions using yeast and mammalian systems. , 2001, Methods in enzymology.

[172]  E. Huq,et al.  A light-switchable gene promoter system , 2002, Nature Biotechnology.

[173]  T. Nakata,et al.  Optogenetic Control of PIP3: PIP3 Is Sufficient to Induce the Actin-Based Active Part of Growth Cones and Is Regulated via Endocytosis , 2013, PloS one.

[174]  C. Brochier,et al.  Poly(ADP-ribose) polymerase 1 is a novel target to promote axonal regeneration , 2015, Proceedings of the National Academy of Sciences.

[175]  B. Kuhlman,et al.  A genetically-encoded photoactivatable Rac controls the motility of living cells , 2009, Nature.

[176]  C. Hoffmann,et al.  Spatiotemporal control of microtubule nucleation and assembly using magnetic nanoparticles. , 2013, Nature nanotechnology.

[177]  M. Therrien,et al.  Regulation of RAF protein kinases in ERK signalling , 2015, Nature Reviews Molecular Cell Biology.

[178]  R. Heumann,et al.  Ras Homolog Enriched in Brain (Rheb) Enhances Apoptotic Signaling , 2010, The Journal of Biological Chemistry.

[179]  M. Uhler,et al.  Phosphatidylinositol 3‐kinase and Akt effectors mediate insulin‐like growth factor‐I neuroprotection in dorsal root ganglia neurons , 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[180]  S. Paik,et al.  Regulation of BNIP3 in normal and cancer cells. , 2006, Molecules and cells.

[181]  D. Bar-Sagi,et al.  Microinjection of the ras oncogene protein into PC12 cells induces morphological differentiation , 1985, Cell.

[182]  Zigang Dong,et al.  Calcium-activated RAF/MEK/ERK signaling pathway mediates p53-dependent apoptosis and is abrogated by alpha B-crystallin through inhibition of RAS activation. , 2005, Molecular biology of the cell.

[183]  Jon Dobson,et al.  Remote control of cellular behaviour with magnetic nanoparticles. , 2008, Nature nanotechnology.

[184]  M. Fainzilber,et al.  Axon–soma communication in neuronal injury , 2013, Nature Reviews Neuroscience.

[185]  A. Wyllie,et al.  Apoptosis: A Basic Biological Phenomenon with Wide-ranging Implications in Tissue Kinetics , 1972, British Journal of Cancer.

[186]  Jon Dobson,et al.  Magnetic micro- and nano-particle-based targeting for drug and gene delivery. , 2006, Nanomedicine.

[187]  V. Cavalli,et al.  Intrinsic mechanisms of neuronal axon regeneration , 2018, Nature Reviews Neuroscience.

[188]  K. Flynn The cytoskeleton and neurite initiation , 2013, Bioarchitecture.

[189]  M. Hall,et al.  mTORC1: Turning Off Is Just as Important as Turning On , 2014, Cell.

[190]  Jonathan S. Dordick,et al.  Radio-Wave Heating of Iron Oxide Nanoparticles Can Regulate Plasma Glucose in Mice , 2012, Science.

[191]  Chentao Lin,et al.  Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis , 2008, Science.

[192]  S. Codeluppi,et al.  Mammalian target of rapamycin in spinal cord neurons mediates hypersensitivity induced by peripheral inflammation , 2010, Neuroscience.

[193]  C. Der,et al.  Ral and Rheb GTPase activating proteins integrate mTOR and GTPase signaling in aging, autophagy, and tumor cell invasion. , 2014, Molecular cell.

[194]  Jonathan S. Dordick,et al.  Bidirectional electromagnetic control of the hypothalamus regulates feeding and metabolism , 2016, Nature.

[195]  D. Kwiatkowski,et al.  Tuberous Sclerosis Complex Activity Is Required to Control Neuronal Stress Responses in an mTOR-Dependent Manner , 2009, The Journal of Neuroscience.

[196]  K. Inoki,et al.  Biochemical and Functional Characterizations of Small GTPase Rheb and TSC2 GAP Activity , 2004, Molecular and Cellular Biology.

[197]  O. Linderkamp,et al.  Fas or ceramide induce apoptosis by Ras‐regulated phosphoinositide‐3‐kinase activation , 1998, Journal of leukocyte biology.

[198]  D. Guertin,et al.  Rictor, a Novel Binding Partner of mTOR, Defines a Rapamycin-Insensitive and Raptor-Independent Pathway that Regulates the Cytoskeleton , 2004, Current Biology.

[199]  Guy A Rutter,et al.  Identification of a Ras GTPase‐activating protein regulated by receptor‐mediated Ca2+ oscillations , 2004, The EMBO journal.

[200]  Paul Tempst,et al.  GbetaL, a positive regulator of the rapamycin-sensitive pathway required for the nutrient-sensitive interaction between raptor and mTOR. , 2003, Molecular cell.

[201]  S. Campbell,et al.  Redox regulation of Ras and Rho GTPases: mechanism and function. , 2013, Antioxidants & redox signaling.

[202]  Y. Araki,et al.  Novel role of the small GTPase Rheb: its implication in endocytic pathway independent of the activation of mammalian target of rapamycin. , 2005, Journal of biochemistry.

[203]  A. Ridley Rho GTPases and actin dynamics in membrane protrusions and vesicle trafficking. , 2006, Trends in cell biology.

[204]  R. Heumann,et al.  Rheb in neuronal degeneration, regeneration, and connectivity , 2017, Biological chemistry.

[205]  B. Davidson,et al.  Reinstating Aberrant mTORC1 Activity in Huntington’s Disease Mice Improves Disease Phenotypes , 2015, Neuron.

[206]  T. Sturgill,et al.  Muscle proteins related to microtubule associated protein-2 are substrates for an insulin-stimulatable kinase. , 1986, Biochemical and biophysical research communications.

[207]  T. Jovin,et al.  Magnetic Nanoparticles as Mediators of Ligand-Free Activation of EGFR Signaling , 2013, PloS one.

[208]  E. Goldsmith,et al.  A constitutively active and nuclear form of the MAP kinase ERK2 is sufficient for neurite outgrowth and cell transformation , 1998, Current Biology.

[209]  I. Vetter,et al.  The Guanine Nucleotide-Binding Switch in Three Dimensions , 2001, Science.

[210]  Jianhua Cao,et al.  Upregulation of Ras homolog enriched in the brain (Rheb) in lipopolysaccharide-induced neuroinflammation , 2013, Neurochemistry International.

[211]  Xiaolin Nan,et al.  Ras Dimer Formation as a New Signaling Mechanism and Potential Cancer Therapeutic Target , 2016, Mini reviews in medicinal chemistry.

[212]  Ulrich Pfisterer,et al.  Direct conversion of human fibroblasts to dopaminergic neurons , 2011, Proceedings of the National Academy of Sciences.

[213]  M. Gordon,et al.  RASSF1A , 2011 .

[214]  K. Kita,et al.  Search for UV-responsive genes in human cells by differential mRNA display: involvement of human ras-related GTP-binding protein, Rheb, in UV susceptibility. , 2000, Biochemical and biophysical research communications.

[215]  W. Kolch,et al.  Cell Type-Specific Activation of AKT and ERK Signaling Pathways by Small Negatively-Charged Magnetic Nanoparticles , 2012, Scientific Reports.

[216]  Matias D Zurbriggen,et al.  Optogenetic control of protein kinase activity in mammalian cells. , 2014, ACS synthetic biology.

[217]  Kazuhiro Aoki,et al.  Stochastic ERK activation induced by noise and cell-to-cell propagation regulates cell density-dependent proliferation. , 2013, Molecular cell.

[218]  M. Sahin,et al.  Loss of the tuberous sclerosis complex tumor suppressors triggers the unfolded protein response to regulate insulin signaling and apoptosis. , 2008, Molecular cell.

[219]  D. Sabatini,et al.  mTOR Interacts with Raptor to Form a Nutrient-Sensitive Complex that Signals to the Cell Growth Machinery , 2002, Cell.

[220]  Masaru Mitsushima,et al.  Extracellular Signal-regulated Kinase Activated by Epidermal Growth Factor and Cell Adhesion Interacts with and Phosphorylates Vinexin* , 2004, Journal of Biological Chemistry.

[221]  Tohru Natsume,et al.  Tti1 and Tel2 Are Critical Factors in Mammalian Target of Rapamycin Complex Assembly* , 2010, The Journal of Biological Chemistry.

[222]  John M. Lambert,et al.  Tiam1 mediates Ras activation of Rac by a PI(3)K-independent mechanism , 2002, Nature Cell Biology.

[223]  Yi Yang,et al.  Spatiotemporal control of gene expression by a light-switchable transgene system , 2012, Nature Methods.

[224]  A. Tolkovsky,et al.  A Role for MAPK/ERK in Sympathetic Neuron Survival: Protection against a p53-Dependent, JNK-Independent Induction of Apoptosis by Cytosine Arabinoside , 1999, The Journal of Neuroscience.

[225]  D. Sabatini,et al.  DEPTOR Is an mTOR Inhibitor Frequently Overexpressed in Multiple Myeloma Cells and Required for Their Survival , 2009, Cell.

[226]  Hannes M. Beyer,et al.  Optogenetic control of signaling in mammalian cells , 2015, Biotechnology journal.

[227]  T. Kataoka,et al.  Role of the CDC25 Homology Domain of Phospholipase Cε in Amplification of Rap1-dependent Signaling* , 2001, The Journal of Biological Chemistry.

[228]  Kenji F. Tanaka,et al.  Near-infrared deep brain stimulation via upconversion nanoparticle–mediated optogenetics , 2018, Science.

[229]  Q. Pankhurst,et al.  Applications of magnetic nanoparticles in biomedicine , 2003 .

[230]  H. J. Wagner,et al.  Optogenetically controlled RAF to characterize BRAF and CRAF protein kinase inhibitors , 2016, Scientific Reports.

[231]  Christopher A. Voigt,et al.  Spatiotemporal Control of Cell Signalling Using A Light-Switchable Protein Interaction , 2009, Nature.

[232]  David R. Kaplan,et al.  Regulation of Neuronal Survival by the Serine-Threonine Protein Kinase Akt , 1997, Science.

[233]  S. Snyder,et al.  RAFT1 phosphorylation of the translational regulators p70 S6 kinase and 4E-BP1. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[234]  W. Weber,et al.  Optogenetic clustering of CNK1 reveals mechanistic insights in RAF and AKT signalling controlling cell fate decisions , 2016, Scientific Reports.

[235]  J. J. Harvey An Unidentified Virus which causes the Rapid Production of Tumours in Mice , 1964, Nature.

[236]  R. Burke,et al.  Expressing Constitutively Active Rheb in Adult Neurons after a Complete Spinal Cord Injury Enhances Axonal Regeneration beyond a Chondroitinase-Treated Glial Scar , 2015, The Journal of Neuroscience.

[237]  P. Quail,et al.  Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light , 1999, Nature.

[238]  S. Yamanaka,et al.  Differential Membrane Localization of ERas and Rheb, Two Ras-related Proteins Involved in the Phosphatidylinositol 3-Kinase/mTOR Pathway* , 2005, Journal of Biological Chemistry.

[239]  M. Gambello,et al.  Mammalian Target of Rapamycin (mTOR) Activation Increases Axonal Growth Capacity of Injured Peripheral Nerves* , 2010, The Journal of Biological Chemistry.

[240]  P. Casey,et al.  Prenylation-dependent Association of Ki-Ras with Microtubules , 1997, The Journal of Biological Chemistry.

[241]  R. Burke,et al.  Combining Constitutively Active Rheb Expression and Chondroitinase Promotes Functional Axonal Regeneration after Cervical Spinal Cord Injury. , 2017, Molecular therapy : the journal of the American Society of Gene Therapy.

[242]  Taeghwan Hyeon,et al.  Designed synthesis of uniformly sized iron oxide nanoparticles for efficient magnetic resonance imaging contrast agents. , 2012, Chemical Society reviews.

[243]  P. Stahl,et al.  Ras-activated endocytosis is mediated by the Rab5 guanine nucleotide exchange activity of RIN1. , 2001, Developmental cell.

[244]  D. Bar-Sagi,et al.  Regulating the regulator: post-translational modification of RAS , 2011, Nature Reviews Molecular Cell Biology.

[245]  M. Rüegg,et al.  Ablation of the mTORC2 component rictor in brain or Purkinje cells affects size and neuron morphology , 2013, The Journal of cell biology.

[246]  P. Rybarczyk,et al.  New insights into pharmacological tools to TR(i)P cancer up , 2014, British journal of pharmacology.

[247]  F. Tamanoi,et al.  Increased Rheb-TOR signaling enhances sensitivity of the whole organism to oxidative stress , 2006, Journal of Cell Science.

[248]  U. Gaul,et al.  The AF-6 homolog canoe acts as a Rap1 effector during dorsal closure of the Drosophila embryo. , 2003, Genetics.

[249]  R. Griffin,et al.  Theoretical and Experimental Basis of Hyperthermia , 2001 .

[250]  Malte Schmick,et al.  KRas Localizes to the Plasma Membrane by Spatial Cycles of Solubilization, Trapping and Vesicular Transport , 2014, Cell.

[251]  K. Christie,et al.  PTEN Inhibition to Facilitate Intrinsic Regenerative Outgrowth of Adult Peripheral Axons , 2010, The Journal of Neuroscience.

[252]  D. McKemy,et al.  Identification of a cold receptor reveals a general role for TRP channels in thermosensation , 2002, Nature.

[253]  H. Dai,et al.  Recovery of function after spinal cord hemisection in newborn and adult rats: Differential effects on reflex and locomotor function , 1992, Experimental Neurology.

[254]  Michael J. Fry,et al.  Phosphatidylinositol-3-OH kinase direct target of Ras , 1994, Nature.

[255]  S. Carr,et al.  PRAS40 is an insulin-regulated inhibitor of the mTORC1 protein kinase. , 2007, Molecular cell.

[256]  Jared E. Toettcher,et al.  Light-based feedback for controlling intracellular signaling dynamics , 2011, Nature Methods.

[257]  A. Carmena,et al.  The PDZ Protein Canoe/AF-6 Links Ras-MAPK, Notch and Wingless/Wnt Signaling Pathways by Directly Interacting with Ras, Notch and Dishevelled , 2006, PloS one.

[258]  K. Kaibuchi,et al.  CRMP-2 regulates polarized Numb-mediated endocytosis for axon growth , 2003, Nature Cell Biology.

[259]  E. Lundquist,et al.  The Rac GTP Exchange Factor TIAM-1 Acts with CDC-42 and the Guidance Receptor UNC-40/DCC in Neuronal Protrusion and Axon Guidance , 2012, PLoS genetics.

[260]  Wei-Ming Chien,et al.  Intracellular Delivery of Proteins with Cell-Penetrating Peptides for Therapeutic Uses in Human Disease , 2016, International journal of molecular sciences.

[261]  E. Wagner,et al.  Transgenic Activation of Ras in Neurons Promotes Hypertrophy and Protects from Lesion-Induced Degeneration , 2000, The Journal of cell biology.

[262]  Yang Li,et al.  Specific Substates of Ras To Interact with GAPs and Effectors: Revealed by Theoretical Simulations and FTIR Experiments. , 2018, The journal of physical chemistry letters.

[263]  Rainer Duden,et al.  Aggregate-prone proteins with polyglutamine and polyalanine expansions are degraded by autophagy. , 2002, Human molecular genetics.

[264]  R. Dolmetsch,et al.  Induction of protein-protein interactions in live cells using light , 2009, Nature Biotechnology.

[265]  Kaden M. Southard,et al.  A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time , 2016, Cell.

[266]  Alfonso Valencia,et al.  The Ras protein superfamily: Evolutionary tree and role of conserved amino acids , 2012, Journal of Cell Biology.

[267]  Sönke Johnsen,et al.  The physics and neurobiology of magnetoreception , 2005, Nature Reviews Neuroscience.

[268]  T. Schwarz,et al.  Ral mediates activity‐dependent growth of postsynaptic membranes via recruitment of the exocyst , 2013, The EMBO journal.

[269]  J. Otto,et al.  The C-terminal Polylysine Region and Methylation of K-Ras Are Critical for the Interaction between K-Ras and Microtubules* , 2000, The Journal of Biological Chemistry.

[270]  J. Avruch,et al.  Raptor, a Binding Partner of Target of Rapamycin (TOR), Mediates TOR Action , 2002, Cell.

[271]  K. Inouye,et al.  Formation of the Ras Dimer Is Essential for Raf-1 Activation* , 2000, The Journal of Biological Chemistry.

[272]  Krister Wennerberg,et al.  The Ras superfamily at a glance , 2005, Journal of Cell Science.

[273]  Peter van Gelderen,et al.  Magnetodendrimers allow endosomal magnetic labeling and in vivo tracking of stem cells , 2001, Nature Biotechnology.

[274]  N. Ratner,et al.  Oligodendrocyte RasG12V expressed in its endogenous locus disrupts myelin structure through increased MAPK, nitric oxide, and notch signaling , 2017, Glia.

[275]  M. Sano Chromatographic Resolution and Characterization of a Nerve Growth Factor‐Dependent Kinase That Phosphorylates Microtubule‐Associated Proteins 1 and 2 in PC12 Cells , 1992, Journal of neurochemistry.

[276]  J. Bos,et al.  AF6 Negatively Regulates Rap1-induced Cell Adhesion* , 2005, Journal of Biological Chemistry.

[277]  R. Loewith,et al.  Mammalian TOR complex 2 controls the actin cytoskeleton and is rapamycin insensitive , 2004, Nature Cell Biology.

[278]  S. R. Datta,et al.  Cell survival promoted by the Ras-MAPK signaling pathway by transcription-dependent and -independent mechanisms. , 1999, Science.

[279]  D. Bar-Sagi,et al.  Differential modification of Ras proteins by ubiquitination. , 2006, Molecular cell.

[280]  John G. Collard,et al.  Expression ofTiam-1in the Developing Brain Suggests a Role for the Tiam-1–Rac Signaling Pathway in Cell Migration and Neurite Outgrowth , 1997, Molecular and Cellular Neuroscience.

[281]  S. Baksh,et al.  RASSF1A: Not a prototypical Ras effector. , 2011, Small GTPases.

[282]  Alexander T Lin-Moore,et al.  RNA ligation in neurons by RtcB inhibits axon regeneration , 2015, Proceedings of the National Academy of Sciences.

[283]  C. Ménager,et al.  Design of magnetic molecularly imprinted polymer nanoparticles for controlled release of doxorubicin under an alternative magnetic field in athermal conditions. , 2015, Nanoscale.

[284]  K. Inoki,et al.  Redox Regulates Mammalian Target of Rapamycin Complex 1 (mTORC1) Activity by Modulating the TSC1/TSC2-Rheb GTPase Pathway* , 2011, The Journal of Biological Chemistry.

[285]  T. Kataoka,et al.  Differential roles of Ras and Rap1 in growth factor-dependent activation of phospholipase Cε , 2002, Oncogene.

[286]  Josiah P. Zayner,et al.  TULIPs: Tunable, light-controlled interacting protein tags for cell biology , 2012, Nature Methods.

[287]  M. Miyamoto,et al.  The novel Rac effector RIN-1 regulates neuronal cell migration and axon pathfinding in C. elegans , 2013, Development.

[288]  J. Knoblich,et al.  The PDZ Protein Canoe Regulates the Asymmetric Division of Drosophila Neuroblasts and Muscle Progenitors , 2008, Current Biology.

[289]  G. Johnson,et al.  Ras-dependent growth factor regulation of MEK kinase in PC12 cells. , 1994, Science.

[290]  R. Burke,et al.  AAV transduction of dopamine neurons with constitutively active Rheb protects from neurodegeneration and mediates axon regrowth. , 2012, Molecular therapy : the journal of the American Society of Gene Therapy.

[291]  J. Avruch,et al.  Identification of Nore1 as a Potential Ras Effector* , 1998, The Journal of Biological Chemistry.

[292]  C. Barnes,et al.  rheb, a growth factor- and synaptic activity-regulated gene, encodes a novel Ras-related protein. , 1994, The Journal of biological chemistry.

[293]  L. Feig Ral-GTPases: approaching their 15 minutes of fame. , 2003, Trends in cell biology.