Genomic architecture of pharmacological efficacy and adverse events.
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Cheng Cheng | Eli Stahl | Marylyn D Ritchie | Wolfgang Sadee | Sarah A Pendergrass | Aparna Chhibber | Michael McGeachie | Cheng Cheng | E. Stahl | R. Plenge | M. Ritchie | S. Pendergrass | W. Sadee | D. Kroetz | M. McGeachie | K. Tantisira | A. Chhibber | Robert Plenge | Kelan G Tantisira | Deanna L Kroetz
[1] John S. Witte,et al. Comprehensive Approach to Analyzing Rare Genetic Variants , 2010, PloS one.
[2] Raymond K. Auerbach,et al. A User's Guide to the Encyclopedia of DNA Elements (ENCODE) , 2011, PLoS biology.
[3] Marylyn D. Ritchie,et al. Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development , 2013, BioData Mining.
[4] Brian F. Gage,et al. Pharmacogenetics of warfarin: regulatory, scientific, and clinical issues , 2008, Journal of Thrombosis and Thrombolysis.
[5] A. Gore,et al. Transgenerational neuroendocrine disruption of reproduction , 2011, Nature Reviews Endocrinology.
[6] W. Sadee,et al. Common CYP2D6 polymorphisms affecting alternative splicing and transcription: long-range haplotypes with two regulatory variants modulate CYP2D6 activity. , 2014, Human molecular genetics.
[7] T E Klein,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for Thiopurine Methyltransferase Genotype and Thiopurine Dosing , 2011, Clinical pharmacology and therapy.
[8] William S Bush,et al. Evidence for polygenic susceptibility to multiple sclerosis--the shape of things to come. , 2010, American journal of human genetics.
[9] G. Montalescot,et al. Cytochrome P450 2C19 polymorphism in young patients treated with clopidogrel after myocardial infarction: a cohort study , 2009, The Lancet.
[10] Andreas Fregin,et al. Mutations in VKORC1 cause warfarin resistance and multiple coagulation factor deficiency type 2 , 2004, Nature.
[11] P. Kwan,et al. Association between HLA‐B*1502 Allele and Antiepileptic Drug‐Induced Cutaneous Reactions in Han Chinese , 2007, Epilepsia.
[12] S. Lemeshow,et al. Dopamine transporter DAT and receptor DRD2 variants affect risk of lethal cocaine abuse: a gene–gene–environment interaction , 2013, Translational psychiatry.
[13] E. Schuetz,et al. Pharmacogenetics of Deoxycytidine Kinase: Identification and Characterization of Novel Genetic Variants , 2007, Journal of Pharmacology and Experimental Therapeutics.
[14] O. Guilbaud,et al. Single‐dose pharmacokinetics of terodiline, including a stable isotope technique for improvement of statistical evaluations , 1988, Biopharmaceutics & drug disposition.
[15] Gaurav Bhatia,et al. A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes , 2010, PLoS Comput. Biol..
[16] W. Thilly,et al. A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (CAST). , 2007, Mutation research.
[17] Thomas Skogh,et al. Fcγ receptor type IIIA genotype and response to tumor necrosis factor α-blocking agents in patients with rheumatoid arthritis , 2007 .
[18] Henrik,et al. Association analyses of 249,796 individuals reveal eighteen new loci associated with body mass index , 2012 .
[19] S. Mallal,et al. The structural basis of HLA‐associated drug hypersensitivity syndromes , 2012, Immunological reviews.
[20] Melissa A. Basford,et al. The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future , 2013, Genetics in Medicine.
[21] J. Kelsoe,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for HLA‐B Genotype and Carbamazepine Dosing , 2012, Clinical pharmacology and therapeutics.
[22] F. Collins,et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits , 2009, Proceedings of the National Academy of Sciences.
[23] J. Sutcliffe,et al. Genetic analysis of biological pathway data through genomic randomization , 2011, Human Genetics.
[24] Marylyn D. Ritchie,et al. Low Frequency Variants, Collapsed Based on Biological Knowledge, Uncover Complexity of Population Stratification in 1000 Genomes Project Data , 2013, PLoS genetics.
[25] M. G. Reese,et al. A probabilistic disease-gene finder for personal genomes. , 2011, Genome research.
[26] W. G. Hill,et al. Genome partitioning of genetic variation for complex traits using common SNPs , 2011, Nature Genetics.
[27] M. Rieder,et al. Use of Pharmacogenetic and Clinical Factors to Predict the Therapeutic Dose of Warfarin , 2008, Clinical pharmacology and therapeutics.
[28] Peter Kraft,et al. Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis , 2012, Nature Genetics.
[29] R. Hui,et al. Common risk allele in aromatic antiepileptic-drug induced Stevens-Johnson syndrome and toxic epidermal necrolysis in Han Chinese. , 2010, Pharmacogenomics.
[30] Aldi Kraja,et al. Genome-wide discovery of loci influencing chemotherapy cytotoxicity. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[31] R. Califf,et al. A pharmacogenetic versus a clinical algorithm for warfarin dosing. , 2013, The New England journal of medicine.
[32] J. Mefford,et al. Polygenic Inheritance of Paclitaxel-Induced Sensory Peripheral Neuropathy Driven by Axon Outgrowth Gene Sets in CALGB 40101 (Alliance) , 2014, The Pharmacogenomics Journal.
[33] Deborah A Nickerson,et al. Effect of VKORC1 haplotypes on transcriptional regulation and warfarin dose. , 2005, The New England journal of medicine.
[34] Chen-Yang Shen,et al. Carbamazepine-induced toxic effects and HLA-B*1502 screening in Taiwan. , 2011, The New England journal of medicine.
[35] S. Leal,et al. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. , 2008, American journal of human genetics.
[36] A. R. Redman,et al. CYP2C9 Genetic Polymorphisms and Warfarin , 2004, Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis.
[37] B K Tang,et al. Hypothesis: comparisons of inter- and intra-individual variations can substitute for twin studies in drug research. , 1998, Pharmacogenetics.
[38] W. Vach,et al. GWAS-based association between RWDD3 and TECTA variants and paclitaxel induced neuropathy could not be confirmed in Scandinavian ovarian cancer patients , 2013, Acta oncologica.
[39] Shufeng Zhou. Polymorphism of Human Cytochrome P450 2D6 and Its Clinical Significance , 2009, Clinical pharmacokinetics.
[40] E. Silverman,et al. Pharmacogenetic differences in response to albuterol between Puerto Ricans and Mexicans with asthma. , 2005, American journal of respiratory and critical care medicine.
[41] J J Swen,et al. Clinical Pharmacogenetics Implementation Consortium Guideline for CYP2D6 and CYP2C19 Genotypes and Dosing of Tricyclic Antidepressants , 2013, Clinical pharmacology and therapeutics.
[42] Munir Pirmohamed,et al. Warfarin pharmacogenetics: a single VKORC1 polymorphism is predictive of dose across 3 racial groups. , 2010, Blood.
[43] P. Visscher,et al. Common polygenic variation contributes to risk of schizophrenia and bipolar disorder , 2009, Nature.
[44] G. Rosner,et al. Rare versus common variants in pharmacogenetics: SLCO1B1 variation and methotrexate disposition. , 2012, Genome research.
[45] Atul J. Butte,et al. Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges , 2012, PLoS Comput. Biol..
[46] B. Huitfeldt,et al. Intra- and inter-individual variation in pharmacokinetics of intravenously infused amoxycillin and ampicillin to elderly volunteers. , 1986, British journal of clinical pharmacology.
[47] Wei Pan,et al. A Data-Adaptive Sum Test for Disease Association with Multiple Common or Rare Variants , 2010, Human Heredity.
[48] J. O’Connell,et al. Association of cytochrome P450 2C19 genotype with the antiplatelet effect and clinical efficacy of clopidogrel therapy. , 2009, JAMA.
[49] M. Whirl‐Carrillo,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for CYP2C9 and VKORC1 Genotypes and Warfarin Dosing , 2011, Clinical pharmacology and therapeutics.
[50] S. Browning,et al. A Groupwise Association Test for Rare Mutations Using a Weighted Sum Statistic , 2009, PLoS genetics.
[51] C. Thermes,et al. Ten years of next-generation sequencing technology. , 2014, Trends in genetics : TIG.
[52] E. Vesell,et al. Genetic control of dicumarol levels in man. , 1968, The Journal of clinical investigation.
[53] K. Sangkuhl,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for Cytochrome P450–2C19 (CYP2C19) Genotype and Clopidogrel Therapy , 2011, Clinical pharmacology and therapeutics.
[54] M. Wagner. Rare-variant genome-wide association studies: a new frontier in genetic analysis of complex traits. , 2013, Pharmacogenomics.
[55] Marylyn D. Ritchie,et al. ATHENA: A Tool for Meta-Dimensional Analysis Applied to Genotypes and Gene Expression Data to Predict HDL Cholesterol Levels , 2012, Pacific Symposium on Biocomputing.
[56] Yusuke Nakamura,et al. A Genome-Wide Association Study Identifies Novel Loci for Paclitaxel-Induced Sensory Peripheral Neuropathy in CALGB 40101 , 2012, Clinical Cancer Research.
[57] R. Altman,et al. Estimation of the warfarin dose with clinical and pharmacogenetic data. , 2009, The New England journal of medicine.
[58] V. Backer,et al. Estimates of asthma heritability in a large twin sample , 2010, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[59] H. Guchelaar,et al. Pharmacogenetics: From Bench to Byte— An Update of Guidelines , 2011, Clinical pharmacology and therapeutics.
[60] W. Sadee. Pharmacogenomic biomarkers: validation needed for both the molecular genetic mechanism and clinical effect. , 2011, Pharmacogenomics.
[61] Manolis Kellis,et al. HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants , 2011, Nucleic Acids Res..
[62] L Gong,et al. The Clinical Pharmacogenomics Implementation Consortium: CPIC Guideline for SLCO1B1 and Simvastatin‐Induced Myopathy , 2012, Clinical pharmacology and therapeutics.
[63] U. Hofmann,et al. Genetic Influences on the Pharmacokinetics of Orally and Intravenously Administered Digoxin as Exhibited by Monozygotic Twins , 2009, Clinical pharmacology and therapeutics.
[64] Russ B Altman,et al. PharmGKB: the Pharmacogenomics Knowledge Base. , 2013, Methods in molecular biology.
[65] L. Endrenyi,et al. Repeat Administration of Drugs as a Means to Assess the Genetic Component in Pharmacological Variability , 1999, Pharmacology.
[66] Ann K Daly. Pharmacogenomics of adverse drug reactions , 2013, Genome Medicine.
[67] Tammy M. Havener,et al. Pharmacogenomic characterization of US FDA-approved cytotoxic drugs. , 2011, Pharmacogenomics.
[68] A. Arvidsson,et al. Plasma and renal clearance of iohexol--a study on the reproducibility of a method for the glomerular filtration rate. , 1990, Scandinavian journal of clinical and laboratory investigation.
[69] M. Relling,et al. Pharmacogenomics: translating functional genomics into rational therapeutics. , 1999, Science.
[70] P. Visscher,et al. Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits , 2012, Nature Genetics.
[71] Alexander F. Wilson,et al. Heritability of Platelet Responsiveness to Aspirin in Activation Pathways Directly and Indirectly Related to Cyclooxygenase-1 , 2007, Circulation.
[72] M. Guyer,et al. Charting a course for genomic medicine from base pairs to bedside , 2011, Nature.
[73] P. Visscher,et al. Estimating missing heritability for disease from genome-wide association studies. , 2011, American journal of human genetics.
[74] L. Gong,et al. Clinical Pharmacogenetics Implementation Consortium (CPIC) Guidelines for IFNL3 (IL28B) Genotype and PEG Interferon‐α–Based Regimens , 2014, Clinical pharmacology and therapy.
[75] R. Deutsch,et al. Fcγ receptor type IIIA polymorphisms influence treatment outcomes in patients with inflammatory arthritis treated with tumor necrosis factor α–blocking agents , 2005 .
[76] K. Giacomini,et al. Estimating the contribution of genes and environment to variation in renal drug clearance. , 2003, Pharmacogenetics.
[77] A. Daly,et al. Genome-wide association studies in pharmacogenomics , 2010, Nature Reviews Genetics.
[78] M. R. Botton,et al. Pharmacogenomics of warfarin in populations of African descent , 2013, British journal of clinical pharmacology.
[79] M. Pirmohamed,et al. HLA-B locus in Caucasian patients with carbamazepine hypersensitivity. , 2006, Pharmacogenomics.
[80] Ayellet V. Segrè,et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height , 2010, Nature.
[81] P. Albertsson,et al. The ABCB1 3435 T allele does not increase the risk of paclitaxel-induced neurotoxicity. , 2010, Oncology letters.
[82] W. Sadee,et al. Intronic polymorphism in CYP3A4 affects hepatic expression and response to statin drugs , 2011, The Pharmacogenomics Journal.
[83] Marylyn D Ritchie,et al. BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge , 2013, BMC Medical Genomics.
[84] Nathan L Tintle,et al. Incorporating prior knowledge to increase the power of genome-wide association studies. , 2013, Methods in molecular biology.
[85] M. Rieder,et al. Association of Vitamin K epoxide reductase complex 1 (VKORC1) variants with warfarin dose in a Hong Kong Chinese patient population , 2005, Pharmacogenetics and genomics.
[86] T. Klein,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for Cytochrome P450 2D6 Genotype and Codeine Therapy: 2014 Update , 2014, Clinical pharmacology and therapy.
[87] P. Visscher,et al. GCTA: a tool for genome-wide complex trait analysis. , 2011, American journal of human genetics.
[88] B. Maher. Personal genomes: The case of the missing heritability , 2008, Nature.
[89] C. Thorn,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for Human Leukocyte Antigen‐B Genotype and Allopurinol Dosing , 2013, Clinical pharmacology and therapeutics.
[90] M. Schumacher,et al. A marker for Stevens-Johnson syndrome …: ethnicity matters , 2006, The Pharmacogenomics Journal.
[91] E. Wiemer,et al. CYP3A4*22 Genotype and Systemic Exposure Affect Paclitaxel-Induced Neurotoxicity , 2013, Clinical Cancer Research.
[92] J. Wagner. Inter- and Intrasubject Variation of Digoxin Renal Clearance in Normal Adult Males , 1988, Drug intelligence & clinical pharmacy.
[93] J. Goldstein,et al. Influence of CYP2C9 Genotype on warfarin dose among African American and European Americans. , 2007, Personalized medicine.
[94] T. Langaee,et al. Genetic and Clinical Predictors of Warfarin Dose Requirements in African Americans , 2010, Clinical pharmacology and therapeutics.
[95] B. Rosner,et al. Long-term variability of bronchial responsiveness to histamine in a random population sample of adults. , 1993, The American review of respiratory disease.
[96] S. Mi,et al. Heritable and non-genetic factors as variables of pharmacologic phenotypes in lymphoblastoid cell lines , 2010, The Pharmacogenomics Journal.
[97] Juan D. Cañete,et al. Influence of variants of Fcγreceptors IIA and IIIA on the ACR and EULAR responses to anti-TNFα therapy in rheumatoid arthritis , 2009 .
[98] P. Neuvonen,et al. Pharmacokinetics of metformin after intravenous and oral administration to man , 1979, European Journal of Clinical Pharmacology.
[99] J. Mega,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for CYP2C19 Genotype and Clopidogrel Therapy: 2013 Update , 2013, Clinical pharmacology and therapeutics.
[100] E. Stahl,et al. Polygenic heritability estimates in pharmacogenetics: focus on asthma and related phenotypes , 2013, Pharmacogenetics and genomics.
[101] T. Baglin,et al. Influence of cytochrome P-450 CYP2C9 polymorphisms on warfarin sensitivity and risk of over-anticoagulation in patients on long-term treatment. , 2000 .
[102] E. Cook,et al. Heritability and Linkage Analysis of Sensitivity to Cisplatin-Induced Cytotoxicity , 2004, Cancer Research.
[103] K. Suphapeetiporn,et al. Carbamazepine and phenytoin induced Stevens‐Johnson syndrome is associated with HLA‐B*1502 allele in Thai population , 2008, Epilepsia.
[104] Marylyn D. Ritchie,et al. Using BioBin to Explore Rare Variant Population Stratification , 2012, Pacific Symposium on Biocomputing.
[105] P. Visscher,et al. Common SNPs explain a large proportion of heritability for human height , 2011 .
[106] R. Desnick,et al. Warfarin pharmacogenetics: CYP2C9 and VKORC1 genotypes predict different sensitivity and resistance frequencies in the Ashkenazi and Sephardi Jewish populations. , 2008, American journal of human genetics.
[107] Andrew D. Johnson,et al. Pharmacogenomics of the RNA World: Structural RNA Polymorphisms in Drug Therapy , 2011, Clinical pharmacology and therapeutics.
[108] W. Vach,et al. Retrospective study of the impact of pharmacogenetic variants on paclitaxel toxicity and survival in patients with ovarian cancer , 2011, European Journal of Clinical Pharmacology.
[109] Florence Demenais,et al. A large-scale, consortium-based genomewide association study of asthma. , 2010, The New England journal of medicine.
[110] Marylyn D. Ritchie,et al. Initialization parameter sweep in ATHENA: optimizing neural networks for detecting gene-gene interactions in the presence of small main effects , 2010, GECCO '10.
[111] T. Klein,et al. CPIC: Clinical Pharmacogenetics Implementation Consortium of the Pharmacogenomics Research Network , 2011, Clinical pharmacology and therapeutics.
[112] A. Paterson,et al. Evaluation of the genetic component of variability in CYP3A4 activity: a repeated drug administration method. , 2000, Pharmacogenetics.
[113] G. Swan,et al. Heritability of metformin renal clearance , 2005 .
[114] S. Duan,et al. Mapping genes that contribute to daunorubicin-induced cytotoxicity. , 2007, Cancer research.
[115] M. Rieder,et al. In-vitro and in-vivo effects of the CYP2C9*11 polymorphism on warfarin metabolism and dose , 2005, Pharmacogenetics and genomics.
[116] Marylyn D. Ritchie,et al. Pacific Symposium on Biocomputing 14:368-379 (2009) BIOFILTER: A KNOWLEDGE-INTEGRATION SYSTEM FOR THE MULTI-LOCUS ANALYSIS OF GENOME-WIDE ASSOCIATION STUDIES * , 2022 .
[117] Panos Deloukas,et al. The largest prospective warfarin-treated cohort supports genetic forecasting. , 2009, Blood.
[118] W. Sadee. The Relevance of “Missing Heritability ” in Pharmacogenomics , 2012, Clinical pharmacology and therapeutics.
[119] T. Klein,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for HLA‐B Genotype and Abacavir Dosing: 2014 Update , 2014, Clinical pharmacology and therapeutics.
[120] Wei Zhang,et al. SCAN: SNP and copy number annotation , 2010, Bioinform..
[121] H. Cordell. Detecting gene–gene interactions that underlie human diseases , 2009, Nature Reviews Genetics.
[122] E. McDonagh,et al. Clinical Pharmacogenetics Implementation Consortium (CPIC) Guidelines for Ivacaftor Therapy in the Context of CFTR Genotype , 2014, Clinical pharmacology and therapeutics.
[123] Teri E. Klein,et al. Clinical Pharmacogenetics Implementation Consortium Guidelines for Dihydropyrimidine Dehydrogenase Genotype and Fluoropyrimidine Dosing , 2013, Clinical pharmacology and therapeutics.
[124] N. Eriksson,et al. A randomized trial of genotype-guided dosing of warfarin. , 2013, The New England journal of medicine.
[125] Jeffrey N. Martin,et al. Measuring the overall genetic component of nevirapine pharmacokinetics and the role of selected polymorphisms: towards addressing the missing heritability in pharmacogenetic phenotypes? , 2013, Pharmacogenetics and genomics.
[126] Xihong Lin,et al. Rare-variant association testing for sequencing data with the sequence kernel association test. , 2011, American journal of human genetics.
[127] Lee-Jen Wei,et al. Pooled Association Tests for Rare Variants in Exon-Resequencing Studies , 2010 .
[128] Dan M Roden,et al. Genetic determinants of response to warfarin during initial anticoagulation. , 2008, The New England journal of medicine.
[129] Eurie L. Hong,et al. Annotation of functional variation in personal genomes using RegulomeDB , 2012, Genome research.
[130] J. Halperin,et al. CYP2C9*8 is prevalent among African-Americans: implications for pharmacogenetic dosing. , 2009, Pharmacogenomics.
[131] Lingling Li,et al. Repeatability of response to asthma medications. , 2009, The Journal of allergy and clinical immunology.