Diagnosing the Dynamics of Observed and Simulated Ecosystem Gross Primary Productivity with Time Causal Information Theory Quantifiers

Data analysis and model-data comparisons in the environmental sciences require diagnostic measures that quantify time series dynamics and structure, and are robust to noise in observational data. This paper investigates the temporal dynamics of environmental time series using measures quantifying their information content and complexity. The measures are used to classify natural processes on one hand, and to compare models with observations on the other. The present analysis focuses on the global carbon cycle as an area of research in which model-data integration and comparisons are key to improving our understanding of natural phenomena. We investigate the dynamics of observed and simulated time series of Gross Primary Productivity (GPP), a key variable in terrestrial ecosystems that quantifies ecosystem carbon uptake. However, the dynamics, patterns and magnitudes of GPP time series, both observed and simulated, vary substantially on different temporal and spatial scales. We demonstrate here that information content and complexity, or Information Theory Quantifiers (ITQ) for short, serve as robust and efficient data-analytical and model benchmarking tools for evaluating the temporal structure and dynamical properties of simulated or observed time series at various spatial scales. At continental scale, we compare GPP time series simulated with two models and an observations-based product. This analysis reveals qualitative differences between model evaluation based on ITQ compared to traditional model performance metrics, indicating that good model performance in terms of absolute or relative error does not imply that the dynamics of the observations is captured well. Furthermore, we show, using an ensemble of site-scale measurements obtained from the FLUXNET archive in the Mediterranean, that model-data or model-model mismatches as indicated by ITQ can be attributed to and interpreted as differences in the temporal structure of the respective ecological time series. At global scale, our understanding of C fluxes relies on the use of consistently applied land models. Here, we use ITQ to evaluate model structure: The measures are largely insensitive to climatic scenarios, land use and atmospheric gas concentrations used to drive them, but clearly separate the structure of 13 different land models taken from the CMIP5 archive and an observations-based product. In conclusion, diagnostic measures of this kind provide data-analytical tools that distinguish different types of natural processes based solely on their dynamics, and are thus highly suitable for environmental science applications such as model structural diagnostics.

[1]  T. Vesala,et al.  On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm , 2005 .

[2]  R. Gray Entropy and Information Theory , 1990, Springer New York.

[3]  Carlo Mazzetti,et al.  Thermomechanical and electrical characterisation of EVA polymer compounds for cable accessories , 2015 .

[4]  B. Pompe,et al.  Permutation entropy: a natural complexity measure for time series. , 2002, Physical review letters.

[5]  A. Arneth,et al.  Separation of net ecosystem exchange into assimilation and respiration using a light response curve approach: critical issues and global evaluation , 2010 .

[6]  Mathieu Sinn,et al.  Ordinal analysis of time series , 2005 .

[7]  Osvaldo A. Rosso,et al.  Entropy-Complexity Characterization of Brain Development in Chickens , 2014, Entropy.

[8]  M. C. Soriano,et al.  Time Scales of a Chaotic Semiconductor Laser With Optical Feedback Under the Lens of a Permutation Information Analysis , 2011, IEEE Journal of Quantum Electronics.

[9]  Ricardo López-Ruiz,et al.  A Statistical Measure of Complexity , 1995, ArXiv.

[10]  C. Osmond,et al.  Functional Significance of Different Pathways of CO 2 Fixation in Photosynthesis , 1982 .

[11]  Wolfgang Knorr,et al.  Annual and interannual CO2 exchanges of the terrestrial biosphere: process-based simulations and uncertainties , 2000 .

[12]  N. Gobron,et al.  Consistent EO Land Surface Products including Uncertainty Estimates , 2016 .

[13]  Jaana M. Hartikainen,et al.  MicroRNA Related Polymorphisms and Breast Cancer Risk , 2014, PloS one.

[14]  Osvaldo A. Rosso,et al.  Intensive entropic non-triviality measure , 2004 .

[15]  Claudio R Mirasso,et al.  A symbolic information approach to determine anticipated and delayed synchronization in neuronal circuit models , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[16]  S. Seneviratne,et al.  Bivariate colour maps for visualizing climate data , 2011 .

[17]  Osvaldo A. Rosso,et al.  Generalized statistical complexity measures: Geometrical and analytical properties , 2006 .

[18]  Maurizio Santoro,et al.  Global covariation of carbon turnover times with climate in terrestrial ecosystems , 2014, Nature.

[19]  Steven F Railsback,et al.  Pattern-oriented modelling: a ‘multi-scope’ for predictive systems ecology , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

[20]  Osvaldo A. Rosso,et al.  Contrasting chaos with noise via local versus global information quantifiers , 2012 .

[21]  C. Müller,et al.  Modelling the role of agriculture for the 20th century global terrestrial carbon balance , 2007 .

[22]  Nuno Carvalhais,et al.  Constraining a land-surface model with multiple observations by application of the MPI-Carbon Cycle Data Assimilation System V1.0 , 2016 .

[23]  Matthew J. Smith,et al.  Transient dynamics of terrestrial carbon storage: Mathematical foundation and numeric examples , 2016 .

[24]  Osvaldo A. Rosso,et al.  Ambiguities in Bandt–Pompe’s methodology for local entropic quantifiers , 2012 .

[25]  André L. L. de Aquino,et al.  Characterization of vehicle behavior with information theory , 2015, ArXiv.

[26]  Alejandra Figliola,et al.  Entropy analysis of the dynamics of El Niño/Southern Oscillation during the Holocene , 2010 .

[27]  O. Rosso,et al.  Complexity–entropy analysis of daily stream flow time series in the continental United States , 2014, Stochastic Environmental Research and Risk Assessment.

[28]  Nadine Gobron,et al.  Exploiting the MODIS albedos with the Two‐stream Inversion Package (JRC‐TIP): 2. Fractions of transmitted and absorbed fluxes in the vegetation and soil layers , 2011 .

[29]  M. C. Soriano,et al.  Distinguishing chaotic and stochastic dynamics from time series by using a multiscale symbolic approach. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

[30]  I. Grosse,et al.  Analysis of symbolic sequences using the Jensen-Shannon divergence. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

[31]  T. Vesala,et al.  Soil carbon model alternatives for ECHAM5/JSBACH climate model: Evaluation and impacts on global carbon cycle estimates , 2011 .

[32]  P. Cox,et al.  Evaluating the Land and Ocean Components of the Global Carbon Cycle in the CMIP5 Earth System Models , 2013 .

[33]  Markus Reichstein,et al.  Soil respiration across scales: The importance of a model–data integration framework for data interpretation† , 2008 .

[34]  Karl E. Taylor,et al.  An overview of CMIP5 and the experiment design , 2012 .

[35]  Massimiliano Zanin,et al.  Permutation Entropy and Its Main Biomedical and Econophysics Applications: A Review , 2012, Entropy.

[36]  Osvaldo A. Rosso,et al.  Causal information quantification of prominent dynamical features of biological neurons , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[37]  O. Rosso,et al.  A permutation information theory tour through different interest rate maturities: the Libor case , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[38]  Michael Hauhs,et al.  Ordinal pattern and statistical complexity analysis of daily stream flow time series , 2013 .

[39]  Jens Kattge,et al.  Will the tropical land biosphere dominate the climate–carbon cycle feedback during the twenty-first century? , 2007 .

[40]  A. M. Kowalski,et al.  Fisher information description of the classicalquantal transition , 2011 .

[41]  O A Rosso,et al.  Distinguishing noise from chaos. , 2007, Physical review letters.

[42]  Osvaldo A. Rosso,et al.  Randomizing nonlinear maps via symbolic dynamics , 2008 .

[43]  Gab Abramowitz,et al.  Towards a public, standardized, diagnostic benchmarking system for land surface models , 2012 .

[44]  Nuno Carvalhais,et al.  Comparing observations and process‐based simulations of biosphere‐atmosphere exchanges on multiple timescales , 2010 .

[45]  Philippe Ciais,et al.  A framework for benchmarking land models , 2012 .

[46]  Marc Simard,et al.  A comprehensive benchmarking system for evaluating global vegetation models , 2012 .

[47]  Osvaldo A. Rosso,et al.  Info-quantifiers’ map-characterization revisited , 2010 .

[48]  Osvaldo A. Rosso,et al.  The (in)visible hand in the Libor market: an information theory approach , 2015, 1508.04748.

[49]  Cristina Masoller,et al.  Detecting and quantifying temporal correlations in stochastic resonance via information theory measures , 2009 .

[50]  Markus Reichstein,et al.  Extreme events in gross primary production: a characterization across continents , 2014 .

[51]  H. Lange,et al.  Classification of Runoff in Headwater Catchments: A Physical Problem? , 2008 .

[52]  O A Rosso,et al.  Quantifiers for randomness of chaotic pseudo-random number generators , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[53]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[54]  S. Seneviratne,et al.  Climate extremes and the carbon cycle , 2013, Nature.

[55]  Bridget S. Wade,et al.  DeepMIP: experimental design for model simulations of the EECO, PETM, and pre-PETM , 2016 .

[56]  P. Dirmeyer,et al.  The Plumbing of Land Surface Models: Benchmarking Model Performance , 2015 .

[57]  I. C. Prentice,et al.  BIOME3: An equilibrium terrestrial biosphere model based on ecophysiological constraints, resource availability, and competition among plant functional types , 1996 .

[58]  Gabriel Abramowitz,et al.  Towards a benchmark for land surface models , 2005 .

[59]  S S I T C H,et al.  Evaluation of Ecosystem Dynamics, Plant Geography and Terrestrial Carbon Cycling in the Lpj Dynamic Global Vegetation Model , 2022 .

[60]  M. Lomas,et al.  Evaluation of terrestrial carbon cycle models for their response to climate variability and to CO2 trends , 2013, Global change biology.

[61]  Birgit Wirtz,et al.  Nonlinear Analysis Of Physiological Data , 2016 .

[62]  M. C. Soriano,et al.  Permutation-information-theory approach to unveil delay dynamics from time-series analysis. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[63]  Nuno Carvalhais,et al.  Harmonized European Long-Term Climate Data for Assessing the Effect of Changing Temporal Variability on Land–Atmosphere CO2 Fluxes* , 2014 .

[64]  V. G. Rousseau,et al.  Finite temperature phase diagram of spin-1/2 bosons in two-dimensional optical lattice , 2011, 1109.3045.

[65]  Osvaldo A. Rosso,et al.  Sampling period, statistical complexity, and chaotic attractors , 2012 .

[66]  Simon Read,et al.  ESMValTool (v1.0) – a community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP , 2015 .

[67]  Jean-Bernard Brissaud,et al.  The meanings of entropy , 2005, Entropy.

[68]  Osvaldo A. Rosso,et al.  Efficiency characterization of a large neuronal network: A causal information approach , 2013, 1304.0399.

[69]  Carl S. McTague,et al.  The organization of intrinsic computation: complexity-entropy diagrams and the diversity of natural information processing. , 2008, Chaos.

[70]  James Turney Allen,et al.  The Meanings of ΚΥΤΟΣ , 1909, Classical Philology.

[71]  Rajeev K. Azad,et al.  Generalization of Entropy Based Divergence Measures for Symbolic Sequence Analysis , 2014, PloS one.

[72]  Osvaldo A. Rosso,et al.  Bandt–Pompe approach to the classical-quantum transition , 2007 .

[73]  Ming Ye,et al.  Towards a comprehensive assessment of model structural adequacy , 2012 .

[74]  C. Bandt Ordinal time series analysis , 2005 .

[75]  W. Oechel,et al.  FLUXNET: A New Tool to Study the Temporal and Spatial Variability of Ecosystem-Scale Carbon Dioxide, Water Vapor, and Energy Flux Densities , 2001 .

[76]  E. K. Lenzi,et al.  Complexity-Entropy Causality Plane as a Complexity Measure for Two-Dimensional Patterns , 2012, PloS one.

[77]  A. Arneth,et al.  Global patterns of land-atmosphere fluxes of carbon dioxide, latent heat, and sensible heat derived from eddy covariance, satellite, and meteorological observations , 2011 .

[78]  Osvaldo A. Rosso,et al.  Statistical complexity and disequilibrium , 2003 .

[79]  Osvaldo A. Rosso,et al.  Causality and the entropy–complexity plane: Robustness and missing ordinal patterns , 2011, 1105.4550.

[80]  Jakob Zscheischler,et al.  A submonthly database for detecting changes in vegetation‐atmosphere coupling , 2015 .

[81]  Nadine Gobron,et al.  Monitoring biosphere vegetation 1998–2009 , 2010 .

[82]  Badong Chen,et al.  Weighted-permutation entropy: a complexity measure for time series incorporating amplitude information. , 2013, Physical review. E, Statistical, nonlinear, and soft matter physics.

[83]  Martín Gómez Ravetti,et al.  The Amigó paradigm of forbidden/missing patterns: a detailed analysis , 2012 .

[84]  John F. B. Mitchell,et al.  The next generation of scenarios for climate change research and assessment , 2010, Nature.

[85]  B. Roy Frieden,et al.  Science from Fisher Information: A Unification , 2004 .