The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific.
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T. Sutton | A. Clooney | F. Ryan | C. Hill | A. Shkoporov | L. Draper | A. Forde | K. Daly | J. A. Nolan | Vimalkumar Velayudhan | E. Khokhlova | Emma Guerin | S. A. McDonnell | R. Ross | R. Ross | C. Hill | R. Ross
[1] J. Matthijnssens,et al. What is (not) known about the dynamics of the human gut virome in health and disease. , 2019, Current opinion in virology.
[2] A. Morozov,et al. Phage-Resistant Phase-Variant Sub-populations Mediate Herd Immunity Against Bacteriophage Invasion of Bacterial Meta-Populations , 2019, Front. Microbiol..
[3] H. Vlamakis,et al. Microbial genes and pathways in inflammatory bowel disease , 2019, Nature Reviews Microbiology.
[4] P. Silver,et al. Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model , 2019, Cell host & microbe.
[5] T. Sutton,et al. Giant oversights in the human gut virome , 2019, Gut.
[6] Evelien M. Adriaenssens,et al. Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks , 2019, Nature Biotechnology.
[7] Christine L. Sun,et al. Clades of huge phages from across Earth’s ecosystems , 2019, bioRxiv.
[8] Jun Yu,et al. Gut mucosal virome alterations in ulcerative colitis , 2019, Gut.
[9] C. Hill,et al. Bacteriophages of the Human Gut: The "Known Unknown" of the Microbiome. , 2019, Cell host & microbe.
[10] Nicholas D. Youngblut,et al. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. , 2019, Cell host & microbe.
[11] L. Debarbieux,et al. The Battle Within: Interactions of Bacteriophages and Bacteria in the Gastrointestinal Tract. , 2019, Cell host & microbe.
[12] Ryan D. Crawford,et al. Multiple phase-variable mechanisms, including capsular polysaccharides, modify bacteriophage susceptibility in Bacteroides thetaiotaomicron , 2019, bioRxiv.
[13] F. Ryan,et al. Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation , 2018, Microbiome.
[14] C. Hill,et al. ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis , 2018, Nature Communications.
[15] G. Sherlock,et al. Transmission and persistence of crAssphage, a ubiquitous human-associated bacteriophage , 2018, bioRxiv.
[16] T. Sutton,et al. Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut. , 2018, Cell host & microbe.
[17] L. Debarbieux,et al. “I will survive”: A tale of bacteriophage-bacteria coevolution in the gut , 2018, Gut microbes.
[18] W. D. de Vos,et al. Akkermansia muciniphila in the Human Gastrointestinal Tract: When, Where, and How? , 2018, Microorganisms.
[19] F. Ryan,et al. Viral Dark Matter in the Gut Virome of Elderly Humans , 2018 .
[20] Brian C. Thomas,et al. Megaphages infect Prevotella and variants are widespread in gut microbiomes , 2018, bioRxiv.
[21] M. Breitbart,et al. Phage puppet masters of the marine microbial realm , 2018, Nature Microbiology.
[22] T. Sutton,et al. Reproducible protocols for metagenomic analysis of human faecal phageomes , 2018, Microbiome.
[23] M. Soares,et al. Assessment of the gorilla gut virome in association with natural simian immunodeficiency virus infection , 2018, Retrovirology.
[24] Chenli Liu,et al. A human gut phage catalog correlates the gut phageome with type 2 diabetes , 2018, Microbiome.
[25] Jun Wang,et al. Quantitative microbiome profiling links gut community variation to microbial load , 2017, Nature.
[26] F. Bushman,et al. Viral communities of the human gut: metagenomic analysis of composition and dynamics , 2017, Mobile DNA.
[27] Emiley A. Eloe-Fadrosh,et al. Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity , 2017, PeerJ.
[28] Arthur Brady,et al. Strains, functions and dynamics in the expanded Human Microbiome Project , 2017, Nature.
[29] P. Pevzner,et al. metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.
[30] S. Duncan,et al. Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics , 2017, The ISME Journal.
[31] Dawn B. Goldsmith,et al. Towards quantitative viromics for both double-stranded and single-stranded DNA viruses , 2016, PeerJ.
[32] Eugene V. Koonin,et al. Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation , 2016, Nucleic Acids Res..
[33] B. Dutilh,et al. Contig annotation tool CAT robustly classifies assembled metagenomic contigs and long sequences , 2016 .
[34] Benjamin Bolduc,et al. Healthy human gut phageome , 2016, Proceedings of the National Academy of Sciences.
[35] F. Rohwer,et al. Piggyback-the-Winner in host-associated microbial communities , 2016, npj Biofilms and Microbiomes.
[36] C. Desnues,et al. Viral metagenomics: are we missing the giants? , 2016, Current opinion in microbiology.
[37] M. Sullivan,et al. Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses , 2016, The ISME Journal.
[38] Douglas S Kwon,et al. Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome. , 2016, Cell host & microbe.
[39] Wen J. Li,et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation , 2015, Nucleic Acids Res..
[40] Duy Tin Truong,et al. MetaPhlAn2 for enhanced metagenomic taxonomic profiling , 2015, Nature Methods.
[41] Forest Rohwer,et al. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition , 2015, Proceedings of the National Academy of Sciences.
[42] Tanja Woyke,et al. Viral dark matter and virus–host interactions resolved from publicly available microbial genomes , 2015, eLife.
[43] Jeroen Raes,et al. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates , 2015, Gut.
[44] Matthew B. Sullivan,et al. VirSorter: mining viral signal from microbial genomic data , 2015, PeerJ.
[45] Jenny Sauk,et al. Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease , 2015, Cell.
[46] Eric J Alm,et al. Host lifestyle affects human microbiota on daily timescales , 2014, Genome Biology.
[47] R. Edwards,et al. A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes , 2014, Nature Communications.
[48] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[49] Derrick E. Wood,et al. Kraken: ultrafast metagenomic sequence classification using exact alignments , 2014, Genome Biology.
[50] J. Gordon,et al. Gnotobiotic mouse model of phage–bacterial host dynamics in the human gut , 2013, Proceedings of the National Academy of Sciences.
[51] Frederic D Bushman,et al. Rapid evolution of the human gut virome , 2013, Proceedings of the National Academy of Sciences.
[52] J. Clemente,et al. The Long-Term Stability of the Human Gut Microbiota , 2013 .
[53] H. Neve,et al. Identification of a New P335 Subgroup through Molecular Analysis of Lactococcal Phages Q33 and BM13 , 2013, Applied and Environmental Microbiology.
[54] J. Vogel,et al. β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity , 2013, Nature Communications.
[55] Curtis Huttenhower,et al. A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets , 2013, PLoS Comput. Biol..
[56] Axel Poulet,et al. Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads , 2012, PloS one.
[57] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[58] D. Lindell,et al. Virus-host swinging party in the oceans , 2012, Mobile genetic elements.
[59] R. Leplae,et al. A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules. , 2011, Research in microbiology.
[60] F. Bushman,et al. The human gut virome: inter-individual variation and dynamic response to diet. , 2011, Genome research.
[61] Kyoung-Ho Kim,et al. Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses , 2011, Applied and Environmental Microbiology.
[62] W. D. de Vos,et al. Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms , 2011, PloS one.
[63] P. Forterre,et al. Microviridae Goes Temperate: Microvirus-Related Proviruses Reside in the Genomes of Bacteroidetes , 2011, PloS one.
[64] Forest Rohwer,et al. Viruses in the fecal microbiota of monozygotic twins and their mothers , 2010, Nature.
[65] B. Haas,et al. A Catalog of Reference Genomes from the Human Microbiome , 2010, Science.
[66] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[67] E. Denou,et al. In vivo replication of T4 and T7 bacteriophages in germ-free mice colonized with Escherichia coli. , 2009, Virology.
[68] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[69] Florent E. Angly,et al. Viral diversity and dynamics in an infant gut. , 2008, Research in microbiology.
[70] Robert C. Edgar,et al. PILER-CR: Fast and accurate identification of CRISPR repeats , 2007, BMC Bioinformatics.
[71] Tao Zhang,et al. RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses , 2005, PLoS biology.
[72] P. Salamon,et al. Metagenomic Analyses of an Uncultured Viral Community from Human Feces , 2003, Journal of bacteriology.
[73] G. Bratbak,et al. Bacteriophage Ecology: Aquatic phage ecology , 2008 .