The use of sighting records to infer species extinctions: an evaluation of different methods.

In the absence of long-term monitoring data, inferences about extinctions of species and populations are generally based on past observations about the presence of a particular species at specified places and times (sightings). Several methods have been developed to estimate the probability and timing of extinctions from records of such sightings, but they differ in their computational complexity and assumptions about the nature of the sighting record. Here we use simulations to evaluate the performance of seven methods proposed to estimate the upper confidence limit on extinction times under different extinction and sampling scenarios. Our results show that the ability of existing methods to correctly estimate the timing of extinctions varies with the type of extinction (sudden vs. gradual) and the nature of sampling effort over time. When the probability of sampling a species declines over time, many of the methods perform poorly. On the other hand, the simulation results also suggest that as long as the choice of the method is determined by the nature of the underlying sighting data, existing methods should provide reliable inferences about the timing of past extinctions.

[1]  Michael A. McCarthy,et al.  Identifying declining and threatened species with museum data , 1998 .

[2]  Peter Wilf,et al.  Impact of the terminal Cretaceous event on plant–insect associations , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[3]  D. J. Strauss,et al.  Classical confidence intervals and Bayesian probability estimates for ends of local taxon ranges , 1989 .

[4]  Andrew R. Solow,et al.  Inferring extinction in a declining population , 1993 .

[5]  A. Solow Inferring Extinction from Sighting Data , 1993 .

[6]  R. Dorazio On the choice of statistical models for estimating occurrence and extinction from animal surveys. , 2007, Ecology.

[7]  A. Solow,et al.  Rediscovery of the Scottish polecat, Mustela putorius: Survival or reintroduction? , 2006 .

[8]  Andrew R. Solow,et al.  A NONPARAMETRIC TEST FOR EXTINCTION BASED ON A SIGHTING RECORD , 2003 .

[9]  C. Marshall,et al.  Sudden and Gradual Molluscan Extinctions in the Latest Cretaceous of Western European Tethys , 1996, Science.

[10]  N. Dulvy,et al.  Methods of assessing extinction risk in marine fishes. , 2004 .

[11]  J. Boreman,et al.  Estimating the Probability That Historical Populations of Fish Species Are Extirpated , 1998 .

[12]  C. Marshall Confidence intervals on stratigraphic ranges: partial relaxation of the assumption of randomly distributed fossil horizons , 1994, Paleobiology.

[13]  A. Solow,et al.  On the Pleistocene extinctions of Alaskan mammoths and horses. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[14]  Charles R. Marshall,et al.  Confidence intervals on stratigraphic ranges , 1990, Paleobiology.

[15]  E. Farnsworth,et al.  Biogeography and decline of rare plants in New England: historical evidence and contemporary monitoring. , 2006, Ecological applications : a publication of the Ecological Society of America.

[16]  F. Kjellberg,et al.  Extinction threat evaluation of endemic fig trees of New Caledonia: Priority assessment for taxonomy and conservation with herbarium collections , 2005, Biodiversity & Conservation.

[17]  A. Tehler,et al.  A herbarium-based method for estimates of temporal frequency changes: mosses in Sweden , 2002 .

[18]  S. Holland Confidence limits on fossil ranges that account for facies changes , 2003, Paleobiology.

[19]  D. Roberts,et al.  Significance of Sighting Rate in Inferring Extinction and Threat , 2006, Conservation biology : the journal of the Society for Conservation Biology.

[20]  D. Roberts Extinct or Possibly Extinct? , 2006, Science.

[21]  Mark A. Burgman,et al.  Inferring Threat from Scientific Collections: Power Tests and an Application to Western Australian Acacia Species , 2000 .

[22]  M. McCarthy,et al.  Inferring persistence of indigenous mammals in response to urbanisation , 2005 .

[23]  David L. Roberts,et al.  Comparing IUCN and Probabilistic Assessments of Threat: Do IUCN Red List Criteria Conflate Rarity and Threat? , 2006, Biodiversity & Conservation.

[24]  D. Roberts,et al.  Inferring extinction from biological records: Were we too quick to write off Miss Waldron’s Red Colobus Monkey (Piliocolobus badius waldronae)? , 2006 .

[25]  J. Nichols,et al.  ESTIMATING RATES OF LOCAL SPECIES EXTINCTION, COLONIZATION, AND TURNOVER IN ANIMAL COMMUNITIES , 1998 .

[26]  H. Shaffer,et al.  The role of natural history collections in documenting species declines. , 1998, Trends in ecology & evolution.

[27]  Arnold I. Miller,et al.  Joint estimation of sampling and turnover rates from fossil databases: capture-mark-recapture methods revisited , 2001, Paleobiology.

[28]  Charles R. Marshall,et al.  Improved confidence intervals for estimating the position of a mass extinction boundary , 2004, Paleobiology.

[29]  J. Nichols,et al.  ESTIMATING SITE OCCUPANCY, COLONIZATION, AND LOCAL EXTINCTION WHEN A SPECIES IS DETECTED IMPERFECTLY , 2003 .

[30]  Philip C. Stouffer,et al.  Rates of species loss from Amazonian forest fragments , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[31]  Kenneth H. Pollock,et al.  Estimating taxonomic diversity, extinction rates, and speciation rates from fossil data using capture-recapture models , 1983, Paleobiology.

[32]  Andrew R Solow,et al.  Inferring extinction from a sighting record. , 2005, Mathematical biosciences.

[33]  Charles R. Marshall,et al.  Confidence intervals on stratigraphic ranges with nonrandom distributions of fossil horizons , 1997, Paleobiology.

[34]  Andrew R. Solow,et al.  Flightless birds: When did the dodo become extinct? , 2003, Nature.