Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity
暂无分享,去创建一个
Frederic Rousseau | M. Madan Babu | Matthieu Legendre | Kris Gevaert | Ksenia Pougach | Kevin J. Verstrepen | Joost Schymkowitz | Sreenivas Chavali | Rita Gemayel | K. Verstrepen | M. Babu | S. Chavali | F. Rousseau | M. Legendre | K. Gevaert | Elisa Van der Zande | Bo Zhu | Steven Boeynaems | K. Pougach | R. Gemayel | Bo Zhu | Steven Boeynaems | Elisa van der Zande | J. Schymkowitz | Elisa van der Zande | Rita Gemayel
[1] Depletion of cognate charged transfer RNA causes translational frameshifting within the expanded CAG stretch in huntingtin. , 2013, Cell reports.
[2] Jung Kyoon Choi,et al. Epigenetic regulation and the variability of gene expression , 2008, Nature Genetics.
[3] Mathias Laga,et al. A COFRADIC protocol to study protein ubiquitination. , 2014, Journal of proteome research.
[4] L. A. Sawyer,et al. Natural variation in a Drosophila clock gene and temperature compensation. , 1997, Science.
[5] Trey Ideker,et al. Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..
[6] J. Whisstock,et al. Functional insights from the distribution and role of homopeptide repeat-containing proteins. , 2005, Genome research.
[7] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[8] F. Rousseau,et al. Redox Proteomics of Protein-bound Methionine Oxidation* , 2011, Molecular & Cellular Proteomics.
[9] Yechezkel Kashi,et al. Evolutionary tuning knobs , 1997 .
[10] N. Barkai,et al. Two strategies for gene regulation by promoter nucleosomes. , 2008, Genome research.
[11] K. Struhl,et al. Functional dissection of the yeast Cyc8–Tupl transcriptional co-repressor complex , 1994, Nature.
[12] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[13] E. Kandel,et al. Essential Role of Coiled Coils for Aggregation and Activity of Q/N-Rich Prions and PolyQ Proteins , 2010, Cell.
[14] C. E. Pearson,et al. Repeat Associated Non-ATG Translation Initiation: One DNA, Two Transcripts, Seven Reading Frames, Potentially Nine Toxic Entities! , 2011, PLoS genetics.
[15] Michael R. Green,et al. Dissecting the Regulatory Circuitry of a Eukaryotic Genome , 1998, Cell.
[16] Catarina Costa,et al. The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae , 2013, Nucleic Acids Res..
[17] N. Barkai,et al. A genetic signature of interspecies variations in gene expression , 2006, Nature Genetics.
[18] H. Garner,et al. Molecular origins of rapid and continuous morphological evolution , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[19] Sander K. Govers,et al. Different Levels of Catabolite Repression Optimize Growth in Stable and Variable Environments , 2014, PLoS biology.
[20] A. Jansen,et al. Large-scale analysis of tandem repeat variability in the human genome , 2014, Nucleic acids research.
[21] Jennifer Abrams,et al. Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System , 2012, Microbiology and Molecular Reviews.
[22] G. Fink,et al. Bakers' yeast, a model for fungal biofilm formation. , 2001, Science.
[23] Susumu Goto,et al. Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..
[24] Andrew W. Murray,et al. Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts , 2010, Current Biology.
[25] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[26] S. Liebman,et al. The yeast global transcriptional co-repressor protein Cyc8 can propagate as a prion , 2009, Nature Cell Biology.
[27] E. O’Shea,et al. An intracellular phosphate buffer filters transient fluctuations in extracellular phosphate levels. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[28] S. Warren,et al. Polyglutamine domain modulates the TBP-TFIIB interaction: implications for its normal function and neurodegeneration , 2007, Nature Neuroscience.
[29] Huda Y. Zoghbi,et al. Diseases of Unstable Repeat Expansion: Mechanisms and Common Principles , 2005, Nature Reviews Genetics.
[30] Marcelo D. Vinces,et al. Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology , 2012, Molecular microbiology.
[31] Damian Szklarczyk,et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration , 2012, Nucleic Acids Res..
[32] Yue Lu,et al. Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8–Tup1 corepressor , 2013, Genome research.
[33] K. Verstrepen,et al. Flocculation, adhesion and biofilm formation in yeasts , 2006, Molecular microbiology.
[34] Peter M. Douglas,et al. Protein homeostasis and aging in neurodegeneration , 2010, The Journal of cell biology.
[35] G. Benson,et al. Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.
[36] R. Truant,et al. Polyglutamine domain flexibility mediates the proximity between flanking sequences in huntingtin , 2013, Proceedings of the National Academy of Sciences.
[37] Laurent Gil,et al. Ensembl 2013 , 2012, Nucleic Acids Res..
[38] W. J. Dickinson,et al. A genome-wide view of the spectrum of spontaneous mutations in yeast , 2008, Proceedings of the National Academy of Sciences.
[39] Dimitris Tzamarias,et al. Cti6, a PHD domain protein, bridges the Cyc8-Tup1 corepressor and the SAGA coactivator to overcome repression at GAL1. , 2002, Molecular cell.
[40] K. Verstrepen,et al. Reconstruction of Ancestral Metabolic Enzymes Reveals Molecular Mechanisms Underlying Evolutionary Innovation through Gene Duplication , 2012, PLoS biology.
[41] Leopold Parts,et al. Population genomics of domestic and wild yeasts , 2008 .
[42] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[43] Janghoo Lim,et al. ATAXIN-1 Interacts with the Repressor Capicua in Its Native Complex to Cause SCA1 Neuropathology , 2006, Cell.
[44] Martin H. Schaefer,et al. Evolution and function of CAG/polyglutamine repeats in protein–protein interaction networks , 2012, Nucleic acids research.
[45] E. Young,et al. Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae. , 2000, Genetics.
[46] N. Pochet,et al. Sequence-based estimation of minisatellite and microsatellite repeat variability. , 2007, Genome research.
[47] Robert P. Davey,et al. Population genomics of domestic and wild yeasts , 2008, Nature.
[48] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[49] H. Mösch,et al. Choosing the right lifestyle: adhesion and development in Saccharomyces cerevisiae. , 2012, FEMS microbiology reviews.
[50] Scott A. Rifkin,et al. Supporting Online Material for Genetic Properties Influencing the Evolvability of Gene Expression , 2007 .
[51] F. Hartl,et al. PolyQ Proteins Interfere with Nuclear Degradation of Cytosolic Proteins by Sequestering the Sis1p Chaperone , 2013, Cell.
[52] S. Lindquist,et al. Protein homeostasis and the phenotypic manifestation of genetic diversity: principles and mechanisms. , 2010, Annual review of genetics.
[53] Tong Ihn Lee,et al. Combined Global Localization Analysis and Transcriptome Data Identify Genes That Are Directly Coregulated by Adr1 and Cat8 , 2005, Molecular and Cellular Biology.
[54] J. Strathern,et al. Methods in yeast genetics : a Cold Spring Harbor Laboratory course manual , 2005 .
[55] O. Gascuel,et al. Deep Conservation of Human Protein Tandem Repeats within the Eukaryotes , 2014, Molecular biology and evolution.
[56] J. Raser,et al. Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.
[57] S. Lindquist,et al. Aggregation of huntingtin in yeast varies with the length of the polyglutamine expansion and the expression of chaperone proteins. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[58] Peter Breuer,et al. Cellular toxicity of polyglutamine expansion proteins: mechanism of transcription factor deactivation. , 2004, Molecular cell.
[59] T. Speed,et al. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. , 2004, Bioinformatics.
[60] M. Gerstein,et al. Genomic analysis of regulatory network dynamics reveals large topological changes , 2004, Nature.
[61] Harry T Orr,et al. Trinucleotide repeat disorders. , 2007, Annual review of neuroscience.
[62] Michael J. Buck,et al. The Stress Response Factors Yap6, Cin5, Phd1, and Skn7 Direct Targeting of the Conserved Co-Repressor Tup1-Ssn6 in S. cerevisiae , 2011, PloS one.
[63] A. Johnson,et al. Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes. , 2000, Trends in biochemical sciences.
[64] E. Nevo,et al. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review , 2002, Molecular ecology.
[65] K. Struhl,et al. The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein. , 2011, Genes & development.
[66] Steven Finkbeiner,et al. Proteostasis of polyglutamine varies among neurons and predicts neurodegeneration. , 2013, Nature chemical biology.
[67] K. Verstrepen,et al. Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3 , 2012, Proceedings of the National Academy of Sciences.
[68] L. Aravind,et al. Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast. , 2006, Journal of molecular biology.
[69] Matthieu Legendre,et al. Variable tandem repeats accelerate evolution of coding and regulatory sequences. , 2010, Annual review of genetics.
[70] Bryan J Venters,et al. A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. , 2011, Molecular cell.
[71] J. Derisi,et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise , 2006, Nature.