Phymm and PhymmBL: Metagenomic Phylogenetic Classification with Interpolated Markov Models
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[1] K. Schleifer,et al. Oxidation of inorganic nitrogen compounds as energy source. , 1992 .
[2] S. Karlin,et al. Dinucleotide relative abundance extremes: a genomic signature. , 1995, Trends in genetics : TIG.
[3] Gapped BLAST and PSI-BLAST: A new , 1997 .
[4] S. Salzberg,et al. Microbial gene identification using interpolated Markov models. , 1998, Nucleic acids research.
[5] S. Salzberg,et al. Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.
[6] J. Handelsman,et al. Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms , 2000, Applied and Environmental Microbiology.
[7] S. Salzberg,et al. Using MUMmer to Identify Similar Regions in Large Sequence Sets , 2003, Current protocols in bioinformatics.
[8] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[9] S. Tringe,et al. Comparative Metagenomics of Microbial Communities , 2004, Science.
[10] Alain Giron,et al. Exploration of phylogenetic data using a global sequence analysis method , 2005, BMC Evolutionary Biology.
[11] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[12] I. Rigoutsos,et al. Accurate phylogenetic classification of variable-length DNA fragments , 2007, Nature Methods.
[13] Steven Salzberg,et al. Identifying bacterial genes and endosymbiont DNA with Glimmer , 2007, Bioinform..
[14] A. Salamov,et al. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods , 2007, Nature Methods.
[15] Alexander F. Auch,et al. MEGAN analysis of metagenomic data. , 2007, Genome research.
[16] Florent E. Angly,et al. Microbial Ecology of Four Coral Atolls in the Northern Line Islands , 2008, PloS one.
[17] Ping Wang,et al. Phylotyping and Functional Analysis of Two Ancient Human Microbiomes , 2008, PloS one.
[18] Naryttza N. Diaz,et al. Phylogenetic classification of short environmental DNA fragments , 2008, Nucleic acids research.
[19] Alla Lapidus,et al. A Bioinformatician's Guide to Metagenomics , 2008, Microbiology and Molecular Biology Reviews.
[20] Michael Roberts,et al. Figaro: a novel statistical method for vector sequence removal , 2008, Bioinform..
[21] Roderic Guigo,et al. A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library , 2008, Nucleic acids research.