Medicago truncatula DNF2 is a PI-PLC-XD-containing protein required for bacteroid persistence and prevention of nodule early senescence and defense-like reactions.

Medicago truncatula and Sinorhizobium meliloti form a symbiotic association resulting in the formation of nitrogen-fixing nodules. Nodule cells contain large numbers of bacteroids which are differentiated, nitrogen-fixing forms of the symbiotic bacteria. In the nodules, symbiotic plant cells home and maintain hundreds of viable bacteria. In order to better understand the molecular mechanism sustaining the phenomenon, we searched for new plant genes required for effective symbiosis. We used a combination of forward and reverse genetics approaches to identify a gene required for nitrogen fixation, and we used cell and molecular biology to characterize the mutant phenotype and to gain an insight into gene function. The symbiotic gene DNF2 encodes a putative phosphatidylinositol phospholipase C-like protein. Nodules formed by the mutant contain a zone of infected cells reduced to a few cell layers. In this zone, bacteria do not differentiate properly into bacteroids. Furthermore, mutant nodules senesce rapidly and exhibit defense-like reactions. This atypical phenotype amongst Fix(-) mutants unravels dnf2 as a new actor of bacteroid persistence inside symbiotic plant cells.

[1]  Rajasekhara Reddy Duvvuru Muni,et al.  A Medicago truncatula Tobacco Retrotransposon Insertion Mutant Collection with Defects in Nodule Development and Symbiotic Nitrogen Fixation1[W][OA] , 2012, Plant Physiology.

[2]  L. Tirichine,et al.  MERE 1 , a Low-Copy-Number Copia-Type Retroelement in Medicago truncatula Active during Tissue Culture 1 [ C ] [ W ] , 2009 .

[3]  Dong Wang Required for Nitrogen-Fixing Symbiosis A Nodule-Specific Protein Secretory Pathway , 2010 .

[4]  B. Hause,et al.  The signal peptide of the Medicago truncatula modular nodulin MtNOD25 operates as an address label for the specific targeting of proteins to nitrogen-fixing symbiosomes. , 2009, Molecular plant-microbe interactions : MPMI.

[5]  A. Eschstruth,et al.  Medicago truncatula transformation using leaf explants. , 2015, Methods in molecular biology.

[6]  Charles Rosenberg,et al.  Genes controlling early and late functions in symbiosis are located on a megaplasmid in Rhizobium meliloti , 2004, Molecular and General Genetics MGG.

[7]  J. Gouzy,et al.  Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules[W] , 2009, The Plant Cell Online.

[8]  A. Timmers,et al.  Saprophytic intracellular rhizobia in alfalfa nodules. , 2000, Molecular plant-microbe interactions : MPMI.

[9]  J. Vasse,et al.  Correlation between ultrastructural differentiation of bacteroids and nitrogen fixation in alfalfa nodules , 1990, Journal of bacteriology.

[10]  F. Galibert,et al.  Eukaryotic control on bacterial cell cycle and differentiation in the Rhizobium-legume symbiosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[11]  E. Fedorova,et al.  Endoreduplication Mediated by the Anaphase-Promoting Complex Activator CCS52A Is Required for Symbiotic Cell Differentiation in Medicago truncatula Nodules Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.014373. , 2003, The Plant Cell Online.

[12]  C. Baron,et al.  Detergent extraction identifies different VirB protein subassemblies of the type IV secretion machinery in the membranes of Agrobacterium tumefaciens , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[13]  A. Kondorosi,et al.  Genetic studies on rhizobiophage 16-3. I. Genes and functions on the chromosome. , 1973, Molecular & general genetics : MGG.

[14]  E. Blancaflor,et al.  Multiple Domains in MtENOD 8 Protein Including the Signal Peptide Target It to The Symbiosome 1 [ W ] [ OA ] , 2012 .

[15]  J. Kenyon,et al.  Analysis of the 5' regulatory region of the human Norrie's disease gene: evidence that a non-translated CT dinucleotide repeat in exon one has a role in controlling expression. , 1999, Gene.

[16]  A. Timmers,et al.  Refined analysis of early symbiotic steps of the Rhizobium-Medicago interaction in relationship with microtubular cytoskeleton rearrangements. , 1999, Development.

[17]  S. Ivashuta,et al.  Recruitment of Novel Calcium-Binding Proteins for Root Nodule Symbiosis in Medicago truncatula1[W][OA] , 2006, Plant Physiology.

[18]  L. Bolaños,et al.  Developmentally regulated membrane glycoproteins sharing antigenicity with rhamnogalacturonan II are not detected in nodulated boron deficient Pisum sativum. , 2007, Plant, cell & environment.

[19]  R. Hammerschmidt,et al.  Phenolic Compounds and Their Role in Disease Resistance , 1992 .

[20]  H. Delacroix,et al.  Differentiation of Symbiotic Cells and Endosymbionts in Medicago truncatula Nodulation Are Coupled to Two Transcriptome-Switches , 2010, PloS one.

[21]  S. Rivas,et al.  Phospholipases in action during plant defense signaling , 2011, Plant signaling & behavior.

[22]  L. Tirichine,et al.  MERE1, a Low-Copy-Number Copia-Type Retroelement in Medicago truncatula Active during Tissue Culture1[C][W] , 2009, Plant Physiology.

[23]  S. Tabata,et al.  The integral membrane protein SEN1 is required for symbiotic nitrogen fixation in Lotus japonicus nodules. , 2012, Plant & cell physiology.

[24]  Laurent Coque,et al.  Transcription of ENOD8 in Medicago truncatula nodules directs ENOD8 esterase to developing and mature symbiosomes. , 2008, Molecular plant-microbe interactions : MPMI.

[25]  S. Rombauts,et al.  Aging in Legume Symbiosis. A Molecular View on Nodule Senescence in Medicago truncatula1[W] , 2006, Plant Physiology.

[26]  A. Kondorosi,et al.  T-DNA mutagenesis in the model plant Medicago truncatula: is it efficient enough for legume molecular genetics? , 2006 .

[27]  E. Kondorosi,et al.  T-DNA tagging in the model legume Medicago truncatula allows efficient gene discovery , 2002, Molecular Breeding.

[28]  R. Hardy,et al.  The acetylene-ethylene assay for n(2) fixation: laboratory and field evaluation. , 1968, Plant physiology.

[29]  Mikiko Abe,et al.  Plant Peptides Govern Terminal Differentiation of Bacteria in Symbiosis , 2010, Science.

[30]  D. Cook,et al.  A Legume Ethylene-Insensitive Mutant Hyperinfected by Its Rhizobial Symbiont , 1997, Science.

[31]  Masayoshi Enami,et al.  Reverse genetics. , 2002, Vaccine.

[32]  Z. Bánfalvi,et al.  Physical and genetic analysis of a symbiotic region of Rhizobium meliloti: Identification of nodulation genes , 1984, Molecular and General Genetics MGG.

[33]  G. Weiller,et al.  A gene expression atlas of the model legume Medicago truncatula. , 2008, The Plant journal : for cell and molecular biology.

[34]  S. Tabata,et al.  A Novel Ankyrin-Repeat Membrane Protein, IGN1, Is Required for Persistence of Nitrogen-Fixing Symbiosis in Root Nodules of Lotus japonicus1[OA] , 2007, Plant Physiology.

[35]  E. Journet,et al.  Seed storage and germination , 2006 .

[36]  G. Coop,et al.  Sequencing and Analysis of , 2006 .

[37]  John Doyle,et al.  Rules of engagement , 2007, Nature.

[38]  R. Dickstein,et al.  An IRE-Like AGC Kinase Gene, MtIRE, Has Unique Expression in the Invasion Zone of Developing Root Nodules in Medicago truncatula1[OA] , 2007, Plant Physiology.

[39]  J. Gouzy,et al.  Expression Profiling in Medicago truncatula Identifies More Than 750 Genes Differentially Expressed during Nodulation, Including Many Potential Regulators of the Symbiotic Program1[w] , 2004, Plant Physiology.

[40]  J. Gouzy,et al.  Transcription Reprogramming during Root Nodule Development in Medicago truncatula , 2011, PloS one.

[41]  K. Mysore,et al.  Reverse genetics in medicago truncatula using Tnt1 insertion mutants. , 2011, Methods in molecular biology.

[42]  Susan E. Brown,et al.  Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon Tn5 mutagenesis , 1982, Journal of bacteriology.

[43]  Alvaro J. González,et al.  The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses , 2011, Nature.

[44]  H. Kouchi,et al.  Cloning and Expression Analysis of a MAPKKK Gene and a Novel Nodulin Gene of Lotus japonicus , 2004, Bioscience, biotechnology, and biochemistry.

[45]  A. Barsch,et al.  Metabolite profiles of nodulated alfalfa plants indicate that distinct stages of nodule organogenesis are accompanied by global physiological adaptations. , 2006, Molecular plant-microbe interactions : MPMI.

[46]  D. Ehrhardt,et al.  Depolarization of alfalfa root hair membrane potential by Rhizobium meliloti Nod factors. , 1992, Science.

[47]  J. Leung,et al.  A New Medicago truncatula Line with Superior in Vitro Regeneration, Transformation, and Symbiotic Properties Isolated Through Cell Culture Selection , 1997 .

[48]  E. Blancaflor,et al.  Multiple Domains in MtENOD8 Protein Including the Signal Peptide Target It to The Symbiosome1[W][OA] , 2012, Plant Physiology.

[49]  H. Hilbi,et al.  Pathogen trafficking pathways and host phosphoinositide metabolism , 2009, Molecular microbiology.

[50]  S. Seredenin,et al.  cDNA macroarray analysis of gene expression changes in rat brain after a single administration of a 2-aminoadamantane derivative , 2005, Molecular Biology.

[51]  R. Williams,et al.  Structural and mechanistic comparison of prokaryotic and eukaryotic phosphoinositide-specific phospholipases C. , 1998, Journal of molecular biology.

[52]  S. Camut,et al.  Rhizobium meliloti Genes Encoding Catabolism of Trigonelline Are Induced under Symbiotic Conditions. , 1990, The Plant cell.

[53]  J. Vasse,et al.  Abortion of infection during the Rhizobium meliloti—alfalfa symbiotic interaction is accompanied by a hypersensitive reaction , 1993 .

[54]  F. de Billy,et al.  Rhizobium meliloti lipooligosaccharide nodulation factors: different structural requirements for bacterial entry into target root hair cells and induction of plant symbiotic developmental responses. , 1994, The Plant cell.

[55]  Patrick X Zhao,et al.  Large-scale Insertional Mutagenesis Using the Tnt1 Retrotransposon in the Model Legume Medicago Truncatula , 2007 .

[56]  S. Long,et al.  Plant and Bacterial Symbiotic Mutants Define Three Transcriptionally Distinct Stages in the Development of the Medicago truncatula/Sinorhizobium meliloti Symbiosis1 , 2004, Plant Physiology.

[57]  S. Long,et al.  Nitrogen Fixation Mutants of Medicago truncatula Fail to Support Plant and Bacterial Symbiotic Gene Expression1[W][OA] , 2006, Plant Physiology.

[58]  M. Blair,et al.  Sequencing and Analysis of Common Bean ESTs. Building a Foundation for Functional Genomics 1[w] , 2005 .

[59]  D. Gonzalez,et al.  Differential Expression of the Arabidopsis Cytochrome c Genes Cytc-1 and Cytc-2. Evidence for the Involvement of TCP-Domain Protein-Binding Elements in Anther- and Meristem-Specific Expression of the Cytc-1 Gene1 , 2005, Plant Physiology.

[60]  A. Eschstruth,et al.  Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula. , 2003, The Plant journal : for cell and molecular biology.

[61]  P. Williams,et al.  Analysis of the 5' regulatory region of the gene for delta-aminolevulinic acid synthetase of Rhizobium meliloti. , 1985, Nucleic acids research.

[62]  P. Durand,et al.  Osmotic shock improves Tnt1 transposition frequency in Medicago truncatula cv Jemalong during in vitro regeneration , 2009, Plant Cell Reports.

[63]  S. Tabata,et al.  Host plant genome overcomes the lack of a bacterial gene for symbiotic nitrogen fixation , 2009, Nature.

[64]  R. Michell Inositol and its derivatives: their evolution and functions. , 2011, Advances in enzyme regulation.

[65]  Mingyi Wang,et al.  The Medicago truncatula gene expression atlas web server , 2009, BMC Bioinformatics.

[66]  R. Longhi,et al.  Protection of Sinorhizobium against Host Cysteine-Rich Antimicrobial Peptides Is Critical for Symbiosis , 2011, PLoS biology.

[67]  P. Poole,et al.  The rules of engagement in the legume-rhizobial symbiosis. , 2011, Annual review of genetics.

[68]  Colby G Starker,et al.  A Nodule-Specific Protein Secretory Pathway Required for Nitrogen-Fixing Symbiosis , 2010, Science.

[69]  E. Kondorosi,et al.  The mitotic inhibitor ccs52 is required for endoreduplication and ploidy‐dependent cell enlargement in plants , 1999, The EMBO journal.

[70]  J. Schnurr,et al.  Expression of coordinately regulated defence response genes and analysis of their role in disease resistance in Medicago truncatula. , 2011, Molecular plant pathology.

[71]  H. Kouchi,et al.  cDNA macroarray analysis of gene expression in ineffective nodules induced on the Lotus japonicus sen1 mutant. , 2004, Molecular plant-microbe interactions : MPMI.