Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation

DNA methylation is an epigenetic modification that is essential for gene silencing and genome stability in many organisms. Although methyltransferases that promote DNA methylation are well characterized, the molecular mechanism underlying active DNA demethylation is poorly understood and controversial. Here we show that Gadd45a (growth arrest and DNA-damage-inducible protein 45 alpha), a nuclear protein involved in maintenance of genomic stability, DNA repair and suppression of cell growth, has a key role in active DNA demethylation. Gadd45a overexpression activates methylation-silenced reporter plasmids and promotes global DNA demethylation. Gadd45a knockdown silences gene expression and leads to DNA hypermethylation. During active demethylation of oct4 in Xenopus laevis oocytes, Gadd45a is specifically recruited to the site of demethylation. Active demethylation occurs by DNA repair and Gadd45a interacts with and requires the DNA repair endonuclease XPG. We conclude that Gadd45a relieves epigenetic gene silencing by promoting DNA repair, which erases methylation marks.

[1]  A. Fornace,et al.  Genomic instability, centrosome amplification, cell cycle checkpoints and Gadd45a , 2002, Oncogene.

[2]  P. O'Connor,et al.  Antisense GADD45 expression results in decreased DNA repair and sensitizes cells to u.v.-irradiation or cisplatin. , 1996, Oncogene.

[3]  Christof Niehrs,et al.  Casein kinase 1 γ couples Wnt receptor activation to cytoplasmic signal transduction , 2005, Nature.

[4]  T. Grange,et al.  Local DNA demethylation in vertebrates: how could it be performed and targeted? , 2001, FEBS letters.

[5]  E. Oakeley,et al.  5-Methylcytosine DNA glycosylase participates in the genome-wide loss of DNA methylation occurring during mouse myoblast differentiation. , 2001, Nucleic acids research.

[6]  C. W. Graham,et al.  Nucleotide Excision Repair , 2006 .

[7]  J. Herman,et al.  CpG methylation is maintained in human cancer cells lacking DNMT1 , 2000, Nature.

[8]  P. O'Connor,et al.  Interaction of the p53-regulated protein Gadd45 with proliferating cell nuclear antigen. , 1994, Science.

[9]  S. Simonsson,et al.  DNA demethylation is necessary for the epigenetic reprogramming of somatic cell nuclei , 2004, Nature Cell Biology.

[10]  W. Dunphy,et al.  Cell cycle control by Xenopus p28Kix1, a developmentally regulated inhibitor of cyclin-dependent kinases. , 1996, Molecular biology of the cell.

[11]  R. Jaenisch,et al.  Nuclear cloning, epigenetic reprogramming, and cellular differentiation. , 2004, Cold Spring Harbor symposia on quantitative biology.

[12]  Li Yang,et al.  Effects of DNA methylation on expression of tumor suppressor genes and proto-oncogene in human colon cancer cell lines. , 2003, World journal of gastroenterology.

[13]  Satoshi Tanaka,et al.  Epigenetic Control of Mouse Oct-4 Gene Expression in Embryonic Stem Cells and Trophoblast Stem Cells* , 2004, Journal of Biological Chemistry.

[14]  M. Groudine,et al.  Long-Distance Control of Origin Choice and Replication Timing in the Human β-Globin Locus Are Independent of the Locus Control Region , 2000, Molecular and Cellular Biology.

[15]  D. Sviridov,et al.  Demethylation using the epigenetic modifier, 5-azacytidine, increases the efficiency of transient transfection of macrophages Published, JLR Papers in Press, November 1, 2004. DOI 10.1194/jlr.D400014-JLR200 , 2005, Journal of Lipid Research.

[16]  C. Niehrs,et al.  Nuclear Reprogramming of Human Somatic Cells by Xenopus Egg Extract Requires BRG1 , 2004, Current Biology.

[17]  N. Iyer,et al.  Interactions involving the human RNA polymerase II transcription/nucleotide excision repair complex TFIIH, the nucleotide excision repair protein XPG, and Cockayne syndrome group B (CSB) protein. , 1996, Biochemistry.

[18]  J. Issa CpG island methylator phenotype in cancer , 2004, Nature Reviews Cancer.

[19]  S. Jacobsen,et al.  DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis , 2002, Cell.

[20]  I. Bae,et al.  Gadd45 family proteins are coactivators of nuclear hormone receptors. , 2000, Biochemical and biophysical research communications.

[21]  A. Bird DNA methylation patterns and epigenetic memory. , 2002, Genes & development.

[22]  N. Ahuja,et al.  Methylation and silencing of the Thrombospondin-1 promoter in human cancer , 1999, Oncogene.

[23]  Y. Bergman,et al.  A Unique Developmental Pattern of Oct-3/4DNA Methylation Is Controlled by a cis-demodification Element* , 2002, The Journal of Biological Chemistry.

[24]  DNA Demethylation In Vitro Involvement of RNA , 1998, Cell.

[25]  H. Schöler,et al.  Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells. , 1996, Development.

[26]  H. Nagai,et al.  Densely methylated MLH1 promoter correlates with decreased mRNA expression in sporadic colorectal cancers , 2002, Genes, chromosomes & cancer.

[27]  R. R. Ariza,et al.  ROS1, a Repressor of Transcriptional Gene Silencing in Arabidopsis, Encodes a DNA Glycosylase/Lyase , 2002, Cell.

[28]  C. Prives,et al.  Use of oligonucleotides for antisense experiments in Xenopus laevis oocytes. , 1991, Methods in cell biology.

[29]  T. Myers,et al.  Gadd45, a p53-Responsive Stress Protein, Modifies DNA Accessibility on Damaged Chromatin , 1999, Molecular and Cellular Biology.