CANTATAdb: A Collection of Plant Long Non-Coding RNAs
暂无分享,去创建一个
[1] Shihua Zhang,et al. PLNlncRbase: A resource for experimentally identified lncRNAs in plants. , 2015, Gene.
[2] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[3] María Martín,et al. UniProt: A hub for protein information , 2015 .
[4] Richard Gibson,et al. Content discovery and retrieval services at the European Nucleotide Archive , 2014, Nucleic Acids Res..
[5] Zhen Su,et al. PNRD: a plant non-coding RNA database , 2014, Nucleic Acids Res..
[6] Alessandro Vullo,et al. Ensembl 2015 , 2014, Nucleic Acids Res..
[7] The Uniprot Consortium,et al. UniProt: a hub for protein information , 2014, Nucleic Acids Res..
[8] Marcel E. Dinger,et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs , 2014, Nucleic Acids Res..
[9] F. Ariel,et al. Long noncoding RNA modulates alternative splicing regulators in Arabidopsis. , 2014, Developmental cell.
[10] W. Terzaghi,et al. Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light , 2014, Proceedings of the National Academy of Sciences.
[11] Wei Wu,et al. NONCODEv4: exploring the world of long non-coding RNA genes , 2013, Nucleic Acids Res..
[12] Ana Kozomara,et al. miRBase: annotating high confidence microRNAs using deep sequencing data , 2013, Nucleic Acids Res..
[13] Dan M. Bolser,et al. Ensembl Genomes 2013: scaling up access to genome-wide data , 2013, Nucleic Acids Res..
[14] Sarah Geisler,et al. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts , 2013, Nature Reviews Molecular Cell Biology.
[15] Y. Poirier,et al. A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness[C][W] , 2013, Plant Cell.
[16] Yi Zhao,et al. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts , 2013, Nucleic acids research.
[17] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[18] Meng Wang,et al. Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants1[W] , 2013, Plant Physiology.
[19] Piero Carninci,et al. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat , 2012, Nature.
[20] J. Goodrich,et al. Non-coding RNAs: key regulators of mammalian transcription. , 2012, Trends in biochemical sciences.
[21] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[22] Jihua Ding,et al. A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice , 2012, Proceedings of the National Academy of Sciences.
[23] Jian Zhang,et al. PlantNATsDB: a comprehensive database of plant natural antisense transcripts , 2011, Nucleic Acids Res..
[24] P. Pandolfi,et al. A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? , 2011, Cell.
[25] Patrick Xuechun Zhao,et al. psRNATarget: a plant small RNA target analysis server , 2011, Nucleic Acids Res..
[26] Jae Bok Heo,et al. Encoding memory of winter by noncoding RNAs , 2011, Epigenetics.
[27] M. Frith,et al. Adaptive seeds tame genomic sequence comparison. , 2011, Genome research.
[28] L. Maquat,et al. lncRNAs transactivate Staufen1-mediated mRNA decay by duplexing with 3'UTRs via Alu elements , 2010, Nature.
[29] S. Salzberg,et al. TopHat: discovering splice junctions with RNA-Seq , 2009, Bioinform..
[30] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[31] M. Crespi,et al. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. , 2008, Genome research.
[32] Tim R. Mercer,et al. Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities , 2008, PLoS Comput. Biol..
[33] T. Morgan,et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase , 2008, Nature Medicine.
[34] A. G. de Herreros,et al. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. , 2008, Genes & development.
[35] Yong Zhang,et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine , 2007, Nucleic Acids Res..
[36] J. Ladha,et al. Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules. , 1999, The Plant journal : for cell and molecular biology.
[37] M. Szcześniak. (CANTATAdb: a Database of Plant lncRNAs) , 2015 .
[38] Huan Wang,et al. PLncDB: plant long non-coding RNA database , 2013, Bioinform..
[39] Ira M. Hall,et al. BEDTools: a flexible suite of utilities for comparing genomic features , 2010, Bioinform..