Mechanism of Ultrafast Photodecay in Restricted Motions in Protonated Schiff Bases: The Pentadieniminium Cation.
暂无分享,去创建一个
[1] Thomas Müller,et al. High-level multireference methods in the quantum-chemistry program system COLUMBUS: Analytic MR-CISD and MR-AQCC gradients and MR-AQCC-LRT for excited states, GUGA spin–orbit CI and parallel CI density , 2001 .
[2] L. Cederbaum,et al. Environmental effects on a conical intersection: a model study. , 2004, Faraday discussions.
[3] R. Mathies,et al. Femtosecond stimulated Raman spectroscopy. , 2007 .
[4] W. Fuß,et al. Structure of the Conical Intersections Driving the cis–trans Photoisomerization of Conjugated Molecules¶ , 2002, Photochemistry and photobiology.
[5] Karl Edman,et al. Bacteriorhodopsin: a high-resolution structural view of vectorial proton transport. , 2002, Biochimica et biophysica acta.
[6] G. Atkinson,et al. Vibrational Spectrum of the J-625 Intermediate in the Room Temperature Bacteriorhodopsin Photocycle , 2000 .
[7] Klaus Schulten,et al. Quantum Chemistry: Molecular Dynamics Study of the Dark-Adaptation Process in Bacteriorhodopsin , 1996 .
[8] Igor Schapiro,et al. Photochemistry of visual pigment chromophore models by ab initio molecular dynamics. , 2007, The journal of physical chemistry. B.
[9] R A Mathies,et al. Assignment of fingerprint vibrations in the resonance Raman spectra of rhodopsin, isorhodopsin, and bathorhodopsin: implications for chromophore structure and environment. , 1987, Biochemistry.
[10] Marco Garavelli,et al. Initial Excited-State Relaxation of the Isolated 11-cis Protonated Schiff Base of Retinal: Evidence for in-Plane Motion from ab Initio Quantum Chemical Simulation of the Resonance Raman Spectrum , 1999 .
[11] Hans Lischka,et al. A general multireference configuration interaction gradient program , 1992 .
[12] M. Robb,et al. Excited state molecular dynamics of retinal model chromophores , 2005 .
[13] N. Mataga,et al. Excited-state dynamics of rhodopsin probed by femtosecond fluorescence spectroscopy , 2001 .
[14] Marco Garavelli,et al. Counterion controlled photoisomerization of retinal chromophore models: a computational investigation. , 2004, Journal of the American Chemical Society.
[15] G. Granucci,et al. Critical appraisal of the fewest switches algorithm for surface hopping. , 2007, The Journal of chemical physics.
[16] C. H. Brito Cruz,et al. Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin. , 1988, Science.
[17] T G Ebrey,et al. Quantum efficiency of the photochemical cycle of bacteriorhodopsin. , 1990, Biophysical journal.
[18] S Haacke,et al. Insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[19] R. Mathies,et al. Structural Observation of the Primary Isomerization in Vision with Femtosecond-Stimulated Raman , 2005, Science.
[20] R. Birge,et al. Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin. , 1990, Biochimica et biophysica acta.
[21] Thom Vreven,et al. Ab Initio Photoisomerization Dynamics of a Simple Retinal Chromophore Model , 1997 .
[22] R A Mathies,et al. The first step in vision: femtosecond isomerization of rhodopsin. , 1991, Science.
[23] Marco Garavelli,et al. Structure of the intersection space associated with ZIE photoisomerization of retinal in rhodopsin proteins. , 2004, Faraday discussions.
[24] Michael A. Robb,et al. Nonadiabatic Dynamics: A Comparison of Surface Hopping Direct Dynamics with Quantum Wavepacket Calculations , 2003 .
[25] K. Schulten,et al. Molecular dynamics simulation of bacteriorhodopsin's photoisomerization using ab initio forces for the excited chromophore. , 2003, Biophysical journal.
[26] J. Pople,et al. Self—Consistent Molecular Orbital Methods. XII. Further Extensions of Gaussian—Type Basis Sets for Use in Molecular Orbital Studies of Organic Molecules , 1972 .
[27] K. Houk,et al. H/vinyl conical intersections of hexatrienes related to the hula-twist photoisomerization , 2006 .
[28] V. Buss,et al. Origin of spectral tuning in rhodopsin--it is not the binding pocket. , 2007, Angewandte Chemie.
[29] M. Olivucci,et al. Photoisomerization acceleration in retinal protonated Schiff-base models. , 2003, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
[30] Massimo Olivucci,et al. Probing the Photochemical Funnel of a Retinal Chromophore Model via Zero-Point Energy Sampling Semiclassical Dynamics. , 2004 .
[31] Arieh Warshel,et al. Nature of the Surface Crossing Process in Bacteriorhodopsin: Computer Simulations of the Quantum Dynamics of the Primary Photochemical Event , 2001 .
[32] D. Oesterhelt,et al. Functions of a new photoreceptor membrane. , 1973, Proceedings of the National Academy of Sciences of the United States of America.
[33] Klaus Schulten,et al. Color tuning in rhodopsins: the mechanism for the spectral shift between bacteriorhodopsin and sensory rhodopsin II. , 2006, Journal of the American Chemical Society.
[34] Ursula Rothlisberger,et al. Solvent and protein effects on the structure and dynamics of the rhodopsin chromophore. , 2005, Chemphyschem : a European journal of chemical physics and physical chemistry.
[35] Gerrit Groenhof,et al. Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis Isomerization of the chromophore in the protein. , 2004, Journal of the American Chemical Society.
[36] Takashi Saito,et al. Real-time spectroscopy of transition states in bacteriorhodopsin during retinal isomerization , 2001, Nature.
[37] Arieh Warshel,et al. Bicycle-pedal model for the first step in the vision process , 1976, Nature.
[38] B. L. Volodin,et al. Picosecond resonance coherent anti-Stokes Raman spectroscopy of bacteriorhodopsin: spectra and quantitative third-order susceptibility analysis of the light-adapted BR-570 , 1994 .
[39] M. Barbatti,et al. Nonadiabatic excited-state dynamics of polar pi-systems and related model compounds of biological relevance. , 2008, Physical chemistry chemical physics : PCCP.
[40] R A Mathies,et al. Vibrationally coherent photochemistry in the femtosecond primary event of vision. , 1994, Science.
[41] J. Pople,et al. Self-consistent molecular orbital methods. 21. Small split-valence basis sets for first-row elements , 2002 .
[42] Kazuya Saito,et al. Theoretical study on hula-twist motion of penta-2,4-dieniminium on the S1 surface under isolated condition by the complete active space self-consistent field theory , 2006 .
[43] M Elstner,et al. Calculating absorption shifts for retinal proteins: computational challenges. , 2005, The journal of physical chemistry. B.
[44] Alessandro Laio,et al. A molecular spring for vision. , 2004, Journal of the American Chemical Society.
[45] A. Asato,et al. The primary process of vision and the structure of bathorhodopsin: a mechanism for photoisomerization of polyenes. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[46] H. Abramczyk,et al. Primary events in the bacteriorhodopsin photocycle: Torsional vibrational dephasing in the first excited electronic state , 2005 .
[47] Hans Lischka,et al. The on-the-fly surface-hopping program system Newton-X: Application to ab initio simulation of the nonadiabatic photodynamics of benchmark systems , 2007 .
[48] Klaus Schulten,et al. Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin. , 2002, Biophysical journal.
[49] N. Ferré,et al. Tracking the excited-state time evolution of the visual pigment with multiconfigurational quantum chemistry , 2007, Proceedings of the National Academy of Sciences.
[50] Dage Sundholm,et al. Stairway to the conical intersection: a computational study of the retinal isomerization. , 2007, The journal of physical chemistry. A.
[51] J. Tully. Molecular dynamics with electronic transitions , 1990 .
[52] V. Buss,et al. Bond torsion affects the product distribution in the photoreaction of retinal model chromophores , 2006, Journal of molecular modeling.
[53] Marco Garavelli,et al. The C 5 H 6 NH 2 + Protonated Shiff Base: An ab Initio Minimal Model for Retinal Photoisomerization , 1997 .
[54] R. Birge,et al. Photophysics of light transduction in rhodopsin and bacteriorhodopsin. , 1981, Annual review of biophysics and bioengineering.
[55] G. Wald. The molecular basis of visual excitation. , 1968, Nature.
[56] Hans Lischka,et al. Analytic evaluation of nonadiabatic coupling terms at the MR-CI level. I. Formalism. , 2004, The Journal of chemical physics.
[57] W. C. Swope,et al. A computer simulation method for the calculation of equilibrium constants for the formation of physi , 1981 .
[58] S. Hammes-Schiffer,et al. Proton transfer in solution: Molecular dynamics with quantum transitions , 1994 .
[59] D. Oesterhelt,et al. Closing in on bacteriorhodopsin: progress in understanding the molecule. , 1999, Annual review of biophysics and biomolecular structure.
[60] J. Tully. Mixed quantum–classical dynamics , 1998 .
[61] A. Bunge,et al. Electronic Wavefunctions for Atoms. III. Partition of Degenerate Spaces and Ground State of C , 1970 .
[62] H. Lischka,et al. Analytic MRCI gradient for excited states: formalism and application to the n-π* valence- and n-(3s,3p) Rydberg states of formaldehyde , 2002 .
[63] Richard A Mathies,et al. Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin. , 2005, The journal of physical chemistry. B.
[64] Helmut Grubmüller,et al. Ultrafast deactivation of an excited cytosine-guanine base pair in DNA. , 2007, Journal of the American Chemical Society.
[65] Massimo Olivucci,et al. Relationship between photoisomerization path and intersection space in a retinal chromophore model. , 2003, Journal of the American Chemical Society.
[66] R. Birge,et al. Molecular dynamics of trans-cis isomerization in bathorhodopsin. , 1981, Biophysical journal.
[67] Hans Lischka,et al. Excited-state properties and environmental effects for protonated schiff bases: a theoretical study. , 2006, Chemphyschem : a European journal of chemical physics and physical chemistry.
[68] John C. Butcher,et al. A Modified Multistep Method for the Numerical Integration of Ordinary Differential Equations , 1965, JACM.
[69] Peter Pulay,et al. The calculation of ab initio molecular geometries: efficient optimization by natural internal coordinates and empirical correction by offset forces , 1992 .
[70] D. Yarkony,et al. Analytic evaluation of nonadiabatic coupling terms at the MR-CI level. II. Minima on the crossing seam: formaldehyde and the photodimerization of ethylene. , 2004, The Journal of chemical physics.
[71] M Olivucci,et al. Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization. , 2000, Proceedings of the National Academy of Sciences of the United States of America.