Properties of the protein matrix revealed by the free energy of cavity formation.
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[1] M L Connolly,et al. Atomic size packing defects in proteins. , 2009, International journal of peptide and protein research.
[2] M Gerstein,et al. Packing at the protein-water interface. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[3] S. Wodak,et al. Free Energy of Cavity Formation in Liquid Water and Hexane , 1996 .
[4] A. Fersht,et al. Relationship between equilibrium amide proton exchange behavior and the folding pathway of barnase. , 1995, Biochemistry.
[5] M. Levitt,et al. The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra. , 1995, Journal of molecular biology.
[6] W. V. Gunsteren,et al. Free energy of cavity formation in solvent: Computational, methodological, and physical aspects , 1995 .
[7] J C Smith,et al. Liquid-like side-chain dynamics in myoglobin. , 1994, Journal of molecular biology.
[8] B. Lee,et al. Role of hydrogen bonds in hydrophobicity: the free energy of cavity formation in water models with and without the hydrogen bonds. , 1994, Biophysical chemistry.
[9] Robert T. Sauer,et al. Protein stability effects of a complete set of alanine substitutions in Arc repressor , 1994, Nature Structural Biology.
[10] J. Thornton,et al. Buried waters and internal cavities in monomeric proteins , 1994, Protein science : a publication of the Protein Society.
[11] M Gerstein,et al. Volume changes on protein folding. , 1994, Structure.
[12] P Argos,et al. Intramolecular cavities in globular proteins. , 1994, Protein engineering.
[13] M Levitt,et al. Water: now you see it, now you don't. , 1993, Structure.
[14] F M Richards,et al. An analysis of packing in the protein folding problem , 1993, Quarterly Reviews of Biophysics.
[15] N. Go,et al. Conformational deformation in deoxymyoglobin by hydrostatic pressure , 1993, Proteins.
[16] K Wüthrich,et al. Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations. , 1993, Journal of molecular biology.
[17] B. Lee. Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller size , 1993, Protein science : a publication of the Protein Society.
[18] K. Dill,et al. Cooperativity in protein-folding kinetics. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[19] L Serrano,et al. The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability. , 1992, Journal of molecular biology.
[20] L Serrano,et al. The folding of an enzyme. VI. The folding pathway of barnase: comparison with theoretical models. , 1992, Journal of molecular biology.
[21] L Serrano,et al. The folding of an enzyme. IV. Structure of an intermediate in the refolding of barnase analysed by a protein engineering procedure. , 1992, Journal of molecular biology.
[22] A. Pohorille,et al. Theory of hydrophobicity: transient cavities in molecular liquids. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[23] B. Matthews,et al. Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. , 1992, Science.
[24] K. Sharp,et al. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons , 1991, Proteins.
[25] Shoshana J. Wodak,et al. Detection of cavities in a set of interpenetrating spheres , 1991 .
[26] J A Wozniak,et al. Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme. , 1991 .
[27] B. Lee,et al. Solvent reorganization contribution to the transfer thermodynamics of small nonpolar molecules , 1991, Biopolymers.
[28] R. L. Baldwin,et al. Probing the stability of a partly folded apomyoglobin intermediate by site-directed mutagenesis. , 1991, Biochemistry.
[29] J Moult,et al. An analysis of protein folding pathways. , 1991, Biochemistry.
[30] T. Terwilliger,et al. Energetics of repacking a protein interior. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[31] W E Stites,et al. Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. , 1990, Biochemistry.
[32] K. Dill. Dominant forces in protein folding. , 1990, Biochemistry.
[33] O. Ptitsyn,et al. Evidence for a molten globule state as a general intermediate in protein folding , 1990, FEBS letters.
[34] B. Matthews,et al. Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[35] A. Fersht,et al. Energetics of complementary side-chain packing in a protein hydrophobic core. , 1989, Biochemistry.
[36] F M Richards,et al. Effect of hydrostatic pressure on the solvent in crystals of hen egg-white lysozyme. , 1988, Journal of molecular biology.
[37] J. Ponder,et al. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. , 1987, Journal of molecular biology.
[38] Hideki Tanaka. Integral equation and Monte Carlo study on hydrophobic effects: Size dependence of apolar solutes on solute–solute interactions and structures of water , 1987 .
[39] M. Karplus,et al. Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin. , 1987, Science.
[40] B. Matthews,et al. Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution. , 1987, Journal of molecular biology.
[41] F M Richards,et al. Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres. , 1987, Journal of molecular biology.
[42] R. L. Baldwin,et al. Temperature dependence of the hydrophobic interaction in protein folding. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[43] B Honig,et al. Internal cavities and buried waters in globular proteins. , 1986, Biochemistry.
[44] K. Wüthrich,et al. Amide proton exchange in proteins by EX1 kinetics: studies of the basic pancreatic trypsin inhibitor at variable p2H and temperature. , 1985, Biochemistry.
[45] B. Lee. A procedure for calculating thermodynamic functions of cavity formation from the pure solvent simulation data , 1985 .
[46] William L. Jorgensen,et al. Optimized intermolecular potential functions for liquid hydrocarbons , 1984 .
[47] I. Kuntz,et al. Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A. , 1984, Biochemistry.
[48] N. Kallenbach,et al. Hydrogen exchange and structural dynamics of proteins and nucleic acids , 1983, Quarterly Reviews of Biophysics.
[49] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[50] M. Karplus,et al. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .
[51] E. Gratton,et al. Adiabatic compressibility of globular proteins. , 1983, Proceedings of the National Academy of Sciences of the United States of America.
[52] J L Finney,et al. Calculation of protein volumes: an alternative to the Voronoi procedure. , 1982, Journal of molecular biology.
[53] C. H. Walker. The Hydrophobic Effect: Formation of Micelles and Biological Membranes , 1981 .
[54] D. Chapman,et al. The Hydrophobic Effect: Formation of Micelles and Biological Membranes (2nd Edition) , 1981 .
[55] A. Sarvazyan,et al. Relaxational contributions to protein compressibility from ultrasonic data , 1979 .
[56] K. Gekko,et al. Compressibility of globular proteins in water at 25.degree.C , 1979 .
[57] F. Richards. Packing defects, cavities, volume fluctuations, and access to the interior of proteins. Including some general comments on surface area and protein structure , 1979 .
[58] F M Richards,et al. Areas, volumes, packing and protein structure. , 1977, Annual review of biophysics and bioengineering.
[59] M. Lucas. Size effect in transfer of nonpolar solutes from gas or solvent to another solvent with a view on hydrophobic behavior , 1976 .
[60] J L Finney,et al. Volume occupation, environment and accessibility in proteins. The problem of the protein surface. , 1975, Journal of molecular biology.
[61] C. Chothia. Structural invariants in protein folding , 1975, Nature.
[62] W. Kauzmann,et al. Protein densities from X-ray crystallographic coordinates , 1974, Nature.
[63] F. Richards. The interpretation of protein structures: total volume, group volume distributions and packing density. , 1974, Journal of molecular biology.
[64] W. Kauzmann,et al. Pressure denaturation of metmyoglobin. , 1973, Biochemistry.
[65] S. Hawley,et al. Reversible pressure--temperature denaturation of chymotrypsinogen. , 1971, Biochemistry.
[66] M. Klapper,et al. On the nature of the protein interior. , 1971, Biochimica et biophysica acta.
[67] B. Lee,et al. The interpretation of protein structures: estimation of static accessibility. , 1971, Journal of molecular biology.
[68] J. Brandts,et al. Thermodynamics of protein denaturation. Effect of pressu on the denaturation of ribonuclease A. , 1970, Biochemistry.
[69] R. Battino,et al. Solubility of Gases in Liquids , 1966 .
[70] R. Pierotti,et al. THE SOLUBILITY OF GASES IN LIQUIDS1 , 1963 .
[71] W. WashburnE.,et al. International Critical Tables , 1927 .
[72] V. Kellogg. The International Critical Tables , 1925, Nature.
[73] K Wüthrich,et al. Protein hydration in aqueous solution. , 1992, Faraday discussions.
[74] A. Pohorille,et al. Cavities in molecular liquids and the theory of hydrophobic solubilities. , 1990, Journal of the American Chemical Society.
[75] G A Petsko,et al. Mapping protein dynamics by X-ray diffraction. , 1985, Progress in biophysics and molecular biology.
[76] R. Pierotti,et al. Aqueous Solutions of Nonpolar Gases1 , 1965 .
[77] R. Pierotti,et al. THE SOLUBILITY OF GASES IN LIQUIDS , 1963 .
[78] Urbakh Vy. On thermodynamics of protein denaturation , 1961 .
[79] V. Urbakh. [On thermodynamics of protein denaturation]. , 1961, Biofizika.
[80] W. Kauzmann. Some factors in the interpretation of protein denaturation. , 1959, Advances in protein chemistry.