Regenerative Adaptation to Electrochemical Perturbation in Planaria: A Molecular Analysis of Physiological Plasticity
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Michael Levin | Christopher J. Martyniuk | Angela Tung | Kelsie Miller | Fallon Durant | M. Levin | C. Martyniuk | Angela Tung | A. Pietak | Anna Kane | Maya Emmons-Bell | J. Morokuma | Fallon Durant | Kelsie A. Miller | D. Davidian | Junji Morokuma | Alexis Pietak | Maya Emmons-Bell | Anna Kane | Devon Davidian
[1] R. Hurst,et al. Barium as a Probe of the Molecular Architecture of the Pore of K+ Channels , 1997 .
[2] D. Eaton,et al. Effects of barium on the potassium conductance of squid axon , 1980, The Journal of general physiology.
[3] J. Simard,et al. Cytotoxic edema: mechanisms of pathological cell swelling. , 2007, Neurosurgical focus.
[4] R. Unwin,et al. Effects of the Potassium Channel Blocker Barium on Sodium and Potassium Transport in the Rat Loop of Henle In Vivo , 2001, Experimental physiology.
[5] A. Sánchez Alvarado,et al. Efficient depletion of ribosomal RNA for RNA sequencing in planarians , 2019, BMC Genomics.
[6] S. Brunke,et al. Adaptive Prediction As a Strategy in Microbial Infections , 2014, PLoS pathogens.
[7] John D. Chan,et al. Kinetic profiling an abundantly expressed planarian serotonergic GPCR identifies bromocriptine as a perdurant antagonist , 2016, International journal for parasitology. Drugs and drug resistance.
[8] R. Dingledine,et al. Structural determinants of barium permeation and rectification in non- NMDA glutamate receptor channels , 1992, The Journal of neuroscience : the official journal of the Society for Neuroscience.
[9] P. Stys,et al. White matter injury: Ischemic and nonischemic , 2014, Glia.
[10] Michael Levin,et al. Normalized shape and location of perturbed craniofacial structures in the Xenopus tadpole reveal an innate ability to achieve correct morphology , 2012, Developmental dynamics : an official publication of the American Association of Anatomists.
[11] Michael Levin,et al. Long-Term, Stochastic Editing of Regenerative Anatomy via Targeting Endogenous Bioelectric Gradients , 2017, Biophysical journal.
[12] A. Pietak,et al. HCN2 Rescues brain defects by enforcing endogenous voltage pre-patterns , 2018, Nature Communications.
[13] A. Tkachenko. Stress Responses of Bacterial Cells as Mechanism of Development of Antibiotic Tolerance (Review) , 2018, Applied Biochemistry and Microbiology.
[14] Peter L. Freddolino,et al. Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior. , 2012, Annual review of cell and developmental biology.
[15] P. Reddien. The Cellular and Molecular Basis for Planarian Regeneration , 2018, Cell.
[16] R. MacKinnon,et al. The Barium Site in a Potassium Channel by X-Ray Crystallography , 2000, The Journal of General Physiology.
[17] S. Skaper. Ion channels on microglia: therapeutic targets for neuroprotection. , 2011, CNS & neurological disorders drug targets.
[18] L. Ptáček,et al. An inwardly rectifying K+ channel is required for patterning , 2012, Development.
[19] O. Pagán,et al. Toxicity and behavioral effects of dimethylsulfoxide in planaria , 2006, Neuroscience Letters.
[20] U. Alon,et al. Dynamical compensation in physiological circuits , 2016, Molecular systems biology.
[21] C. Cepeda,et al. Dopaminergic modulation of early signs of excitotoxicity in visualized rat neostriatal neurons , 1998, The European journal of neuroscience.
[22] John D. Chan,et al. ‘Death and Axes’: Unexpected Ca2+ Entry Phenologs Predict New Anti-schistosomal Agents , 2014, PLoS pathogens.
[23] P. Lukasiewicz,et al. Ca2+-independent excitotoxic neurodegeneration in isolated retina, an intact neural net: a role for Cl- and inhibitory transmitters. , 1998, Molecular pharmacology.
[24] J. Cooke,et al. Scale of body pattern adjusts to available cell number in amphibian embryos , 1981, Nature.
[25] M. Levin,et al. Exploring Instructive Physiological Signaling with the Bioelectric Tissue Simulation Engine , 2016, Front. Bioeng. Biotechnol..
[26] Alejandro Sánchez Alvarado,et al. Cell turnover and adult tissue homeostasis: from humans to planarians. , 2007, Annual review of genetics.
[27] Jang-Yen Wu,et al. Mechanisms of Neuronal Protection against Excitotoxicity, Endoplasmic Reticulum Stress, and Mitochondrial Dysfunction in Stroke and Neurodegenerative Diseases , 2015, Oxidative medicine and cellular longevity.
[28] Takashi Gojobori,et al. Long-range neural and gap junction protein-mediated cues control polarity during planarian regeneration. , 2010, Developmental biology.
[29] A. Masotti,et al. Keppen-Lubinsky syndrome is caused by mutations in the inwardly rectifying K+ channel encoded by KCNJ6. , 2015, American journal of human genetics.
[30] H. Rubin. Cancer as a dynamic developmental disorder. , 1985, Cancer research.
[31] B. Langmead,et al. Aligning Short Sequencing Reads with Bowtie , 2010, Current protocols in bioinformatics.
[32] Shu-Dong Zhang,et al. Identification and validation of the dopamine agonist bromocriptine as a novel therapy for high-risk myelodysplastic syndromes and secondary acute myeloid leukemia , 2015, Oncotarget.
[33] N. Standen,et al. The voltage‐dependent block of ATP‐sensitive potassium channels of frog skeletal muscle by caesium and barium ions. , 1988, The Journal of physiology.
[34] M. Plusquin,et al. Toxicity profiles and solvent–toxicant interference in the planarian Schmidtea mediterranea after dimethylsulfoxide (DMSO) exposure , 2015, Journal of applied toxicology : JAT.
[35] A. Schousboe,et al. The glutamate/GABA‐glutamine cycle: aspects of transport, neurotransmitter homeostasis and ammonia transfer , 2006, Journal of neurochemistry.
[36] J. Reeves,et al. Barium Influx Mediated by the Cardiac Sodium-Calcium Exchanger in Transfected Chinese Hamster Ovary Cells , 1997, The Journal of general physiology.
[37] A. Aboobaker,et al. Secrets from immortal worms: What can we learn about biological ageing from the planarian model system? , 2017, Seminars in cell & developmental biology.
[38] K. Moulder,et al. Excitotoxic Cell Death Dependent on Inhibitory Receptor Activation , 1999, Experimental Neurology.
[39] Jack A. Tuszynski,et al. EDEn–Electroceutical Design Environment: Ion Channel Tissue Expression Database with Small Molecule Modulators , 2018, iScience.
[40] K. Agata,et al. Regeneration‐dependent conditional gene knockdown (Readyknock) in planarian: Demonstration of requirement for Djsnap‐25 expression in the brain for negative phototactic behavior , 2007, Development, growth & differentiation.
[41] Teresa Adell,et al. Planarian regeneration: achievements and future directions after 20 years of research. , 2009, The International journal of developmental biology.
[42] W. D. Dietrich,et al. Preconditioning for Traumatic Brain Injury , 2013, Translational Stroke Research.
[43] A. Akaike,et al. Bromocriptine, a dopamine D(2) receptor agonist with the structure of the amino acid ergot alkaloids, induces neurite outgrowth in PC12 cells. , 2008, European journal of pharmacology.
[44] Michael Levin,et al. On Having No Head: Cognition throughout Biological Systems , 2016, Front. Psychol..
[45] L. Pardo,et al. Potassium channels in cell cycle and cell proliferation , 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.
[46] T. Friedrich,et al. CLC Chloride Channels in Caenorhabditis elegans * , 1999, The Journal of Biological Chemistry.
[47] G. Bell,et al. The ghosts of selection past reduces the probability of plastic rescue but increases the likelihood of evolutionary rescue to novel stressors in experimental populations of wild yeast. , 2016, Ecology letters.
[48] J. Cervera,et al. The interplay between genetic and bioelectrical signaling permits a spatial regionalisation of membrane potentials in model multicellular ensembles , 2016, Scientific Reports.
[49] M. M. White,et al. Niflumic and flufenamic acids are potent reversible blockers of Ca2(+)-activated Cl- channels in Xenopus oocytes. , 1990, Molecular pharmacology.
[50] K. Phelan,et al. The Role of Canonical Transient Receptor Potential Channels in Seizure and Excitotoxicity , 2014, Cells.
[51] Nicola B Mercuri,et al. Transient receptor potential‐like channels mediate metabotropic glutamate receptor EPSCs in rat dopamine neurones , 2004, The Journal of physiology.
[52] Christian C. Naus,et al. Gap junctions and hemichannels: communicating cell death in neurodevelopment and disease , 2017, BMC Cell Biology.
[53] Guillaume Lambert,et al. Memory and Fitness Optimization of Bacteria under Fluctuating Environments , 2014, PLoS genetics.
[54] Bosheng Zhao,et al. Effects of dimethylsulfoxide on behavior and antioxidant enzymes response of planarian Dugesia japonica , 2012, Toxicology and industrial health.
[55] H. Rubin,et al. What keeps cells in tissues behaving normally in the face of myriad mutations? , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.
[56] A. Tarkowski,et al. Mouse Chimæras Developed from Fused Eggs , 1961, Nature.
[57] P. Pinheiro,et al. Up‐regulation of neuropeptide Y levels and modulation of glutamate release through neuropeptide Y receptors in the hippocampus of kainate‐induced epileptic rats , 2005, Journal of neurochemistry.
[58] Michael Levin,et al. A chemical genetics approach reveals H,K-ATPase-mediated membrane voltage is required for planarian head regeneration. , 2011, Chemistry & biology.
[59] K. Kang,et al. Neuronal gap junctions are required for NMDA receptor-mediated excitotoxicity: implications in ischemic stroke. , 2010, Journal of neurophysiology.
[60] E. Saló,et al. Rebuilding a planarian: from early signaling to final shape. , 2018, The International journal of developmental biology.
[61] Andrew Gonzalez,et al. Evolutionary rescue and adaptation to abrupt environmental change depends upon the history of stress , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[62] Michael Levin,et al. Bioelectric signaling regulates head and organ size during planarian regeneration , 2013, Development.
[63] Wanlu Du,et al. TRPC6 inhibited NMDA receptor activities and protected neurons from ischemic excitotoxicity , 2012, Journal of neurochemistry.
[64] C. Lingle,et al. Barium ions selectively activate BK channels via the Ca2+-bowl site , 2012, Proceedings of the National Academy of Sciences.
[65] A. Kaur,et al. Adaptive Prediction Emerges Over Short Evolutionary Time Scales , 2017, Genome biology and evolution.
[66] G. Sobue,et al. Blockade of Gap Junction Hemichannel Suppresses Disease Progression in Mouse Models of Amyotrophic Lateral Sclerosis and Alzheimer's Disease , 2011, PloS one.
[67] D. Kaplan,et al. Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb , 2018, Cell reports.
[68] J. Rink,et al. Total RNA Isolation from Planarian Tissues. , 2018, Methods in molecular biology.
[69] C. Armstrong,et al. Interaction of barium ions with potassium channels in squid giant axons. , 1980, Biophysical journal.
[70] Tsung-Yu Chen,et al. Activation and Inhibition of TMEM16A Calcium-Activated Chloride Channels , 2014, PloS one.
[71] V. Košťál,et al. The Role of Inducible Hsp70, and Other Heat Shock Proteins, in Adaptive Complex of Cold Tolerance of the Fruit Fly (Drosophila melanogaster) , 2015, PloS one.
[72] M. Goldberg,et al. Distinct Roles for Sodium, Chloride, and Calcium in Excitotoxic Dendritic Injury and Recovery , 1998, Experimental Neurology.
[73] G. Pezzulo,et al. Re-membering the body: applications of computational neuroscience to the top-down control of regeneration of limbs and other complex organs. , 2015, Integrative biology : quantitative biosciences from nano to macro.
[74] Eva-Maria S. Collins,et al. On-chip immobilization of planarians for in vivo imaging , 2014, Scientific Reports.
[75] J. Hieble,et al. AMTB, a TRPM8 channel blocker: evidence in rats for activity in overactive bladder and painful bladder syndrome. , 2008, American journal of physiology. Renal physiology.
[76] M. Tymianski,et al. TRPMs and neuronal cell death , 2005, Pflügers Archiv.
[77] E. Rodríguez,et al. Involvement of the crustacean hyperglycemic hormone (CHH) in the physiological compensation of the freshwater crayfish Cherax quadricarinatus to low temperature and high salinity stress , 2016, Journal of Comparative Physiology B.
[78] T. Numakawa,et al. Cabergoline, Dopamine D2 Receptor Agonist, Prevents Neuronal Cell Death under Oxidative Stress via Reducing Excitotoxicity , 2014, PloS one.
[79] B. Bhavnani,et al. Glutamate-induced apoptosis in primary cortical neurons is inhibited by equine estrogens via down-regulation of caspase-3 and prevention of mitochondrial cytochrome c release , 2005, BMC Neuroscience.
[80] T. Egan,et al. Neuropeptide Y inhibition of calcium channels in PC-12 pheochromocytoma cells. , 1998, The American journal of physiology.
[81] A. Gunn,et al. Connexin hemichannel blockade improves survival of striatal GABA-ergic neurons after global cerebral ischaemia in term-equivalent fetal sheep , 2017, Scientific Reports.
[82] L. Pardo,et al. The roles of K+ channels in cancer , 2013, Nature Reviews Cancer.
[83] T. Day,et al. Role of calcium influx through voltage-operated calcium channels and of calcium mobilization in the physiology of Schistosoma mansoni muscle contractions , 2006, Parasitology.
[84] Y. Soen,et al. A principle of organization which facilitates broad Lamarckian-like adaptations by improvisation , 2015, Biology Direct.
[85] A. Lau,et al. Glutamate receptors, neurotoxicity and neurodegeneration , 2010, Pflügers Archiv - European Journal of Physiology.
[86] E. Z. Kim,et al. Nonreciprocal homeostatic compensation in Drosophila potassium channel mutants. , 2017, Journal of neurophysiology.
[87] J. Manzanares,et al. Electrical coupling in ensembles of nonexcitable cells: modeling the spatial map of single cell potentials. , 2015, The journal of physical chemistry. B.
[88] M. Netsky,et al. The Brain of the Planarian as the Ancestor of the Human Brain , 1985, Canadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques.
[89] L. C. Murrin,et al. Dopamine Receptors: Effects of Chronic L‐Dopa and Bromocriptine Treatment in an Animal Model of Parkinson's Disease , 1984, Clinical neuropharmacology.
[90] M. Mattson,et al. Aging and longevity in the simplest animals and the quest for immortality , 2014, Ageing Research Reviews.
[91] Kerstin Bartscherer,et al. Go ahead, grow a head! A planarian's guide to anterior regeneration , 2016, Regeneration.
[92] R. Prost,et al. Pictorial review of glutamate excitotoxicity: fundamental concepts for neuroimaging. , 2001, AJNR. American journal of neuroradiology.
[93] M. Levin,et al. Establishing and maintaining a colony of planarians. , 2008, CSH protocols.
[94] Kiyokazu Agata,et al. Thermosensory Signaling by TRPM Is Processed by Brain Serotonergic Neurons to Produce Planarian Thermotaxis , 2014, The Journal of Neuroscience.
[95] C. Lange,et al. The mechanism of anterior-posterior polarity control in planarians. , 1978, Differentiation; research in biological diversity.
[96] Stephen H Wright,et al. Generation of resting membrane potential. , 2004, Advances in physiology education.
[97] P. Reddien,et al. The cellular basis for animal regeneration. , 2011, Developmental cell.
[98] Y Soen,et al. Scale-invariant fluctuations at different levels of organization in developing heart cell networks. , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[99] Y. Soen,et al. Stress-mediated tuning of developmental robustness and plasticity in flies. , 2015, Biochimica et biophysica acta.
[100] Fallon Durant,et al. Gap Junctional Blockade Stochastically Induces Different Species-Specific Head Anatomies in Genetically Wild-Type Girardia dorotocephala Flatworms , 2015, International journal of molecular sciences.
[101] M. Lazdunski,et al. KATP channel openers, adenosine agonists and epileptic preconditioning are stress signals inducing hippocampal neuroprotection , 2000, Neuroscience.
[102] Donald Wlodkowic,et al. Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2‐associated Andersen–Tawil Syndrome , 2016, The Journal of physiology.
[103] D. Piomelli,et al. Barium Evokes Glutamate Release from Rat Brain Synaptosomes by Membrane Depolarization: Involvement of K+, Na+, and Ca2+ Channels , 1993, Journal of neurochemistry.
[104] Christian P. Petersen,et al. Wnt/Notum spatial feedback inhibition controls neoblast differentiation to regulate reversible growth of the planarian brain , 2015, Development.
[105] Y. T. Wang,et al. Excitotoxicity and stroke: Identifying novel targets for neuroprotection , 2014, Progress in Neurobiology.
[106] M. Levin,et al. Planarian regeneration as a model of anatomical homeostasis: Recent progress in biophysical and computational approaches. , 2019, Seminars in cell & developmental biology.
[107] G. Sperk,et al. Neuropeptide Y inhibits potassium‐stimulated glutamate release through Y2 receptors in rat hippocampal slices in vitro , 1994, British journal of pharmacology.
[108] Roger J. Thompson. Pannexin channels and ischaemia , 2015, The Journal of physiology.
[109] M. Tymianski,et al. Calcium, ischemia and excitotoxicity. , 2010, Cell calcium.
[110] S. Leibler,et al. Bacterial Persistence as a Phenotypic Switch , 2004, Science.
[111] Yonatan Loewenstein,et al. Stochasticity, Bistability and the Wisdom of Crowds: A Model for Associative Learning in Genetic Regulatory Networks , 2013, PLoS Comput. Biol..
[112] W. Corning,et al. Planarian Behaviour and Biochemistry , 1968, Nature.
[113] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[114] N. Wills,et al. Basolateral K channels in an insect epithelium. Channel density, conductance, and block by barium , 1986, The Journal of general physiology.
[115] O. Hamill,et al. NPPB block of Ca++-activated Cl− currents in Xenopus oocytes , 1992, Pflügers Archiv.
[116] Joshua LaPalme,et al. The Role of Early Bioelectric Signals in the Regeneration of Planarian Anterior/Posterior Polarity. , 2019, Biophysical journal.
[117] S. Gandhi,et al. Dopamine protects neurons against glutamate-induced excitotoxicity , 2013, Cell Death and Disease.
[118] M. Levin,et al. Live Imaging of Planarian Membrane Potential Using DiBAC4(3). , 2008, CSH protocols.
[119] L. Holden-Dye,et al. The actions of chloride channel blockers, barbiturates and a benzodiazepine on Caenorhabditis elegans glutamate- and ivermectin-gated chloride channel subunits expressed in Xenopus oocytes , 2009, Invertebrate Neuroscience.
[120] Gabriel S. Eichler,et al. Cell fates as high-dimensional attractor states of a complex gene regulatory network. , 2005, Physical review letters.
[121] D. Nicholls,et al. Barium‐Evoked Glutamate Release from Guinea‐Pig Cerebrocortical Synaptosomes , 1993, Journal of neurochemistry.
[122] Yoav Soen,et al. Epigenetically heritable alteration of fly development in response to toxic challenge. , 2012, Cell reports.
[123] S. Leibler,et al. Bacterial Persistence , 2005, Genetics.
[124] S. Shioda,et al. Anion channel blockers attenuate delayed neuronal cell death induced by transient forebrain ischemia , 2007, Journal of neuroscience research.
[125] C. Martyniuk,et al. Genome wide analysis of Silurana (Xenopus) tropicalis development reveals dynamic expression using network enrichment analysis , 2013, Mechanisms of Development.
[126] I. Vetter,et al. Assessment of the TRPM8 inhibitor AMTB in breast cancer cells and its identification as an inhibitor of voltage gated sodium channels , 2018, Life sciences.
[127] B. MacVicar,et al. The Cellular Mechanisms of Neuronal Swelling Underlying Cytotoxic Edema , 2015, Cell.
[128] M. Lynch,et al. Neuropeptide Y inhibits glutamate release and long-term potentiation in rat dentate gyrus , 1999, Brain Research.
[129] D. Reis,et al. Neuropeptide Y acts at an atypical receptor to evoke cardiovascular depression and to inhibit glutamate responsiveness in the brainstem. , 1991, The Journal of pharmacology and experimental therapeutics.
[130] W. Catterall,et al. Molecular determinants of drug binding and action on L-type calcium channels. , 1997, Annual review of pharmacology and toxicology.
[131] John D. Chan,et al. A Novel Biological Activity of Praziquantel Requiring Voltage-Operated Ca2+ Channel β Subunits: Subversion of Flatworm Regenerative Polarity , 2009, PLoS neglected tropical diseases.
[132] Javier Cervera,et al. Bioelectrical Signals and Ion Channels in the Modeling of Multicellular Patterns and Cancer Biophysics , 2016, Scientific Reports.
[133] Bromocriptine approved as the first medication to target dopamine activity to improve glycemic control in patients with type 2 diabetes , 2010 .
[134] D. Reis,et al. Long-lasting inhibition of the cardiovascular responses to glutamate and the baroreceptor reflex elicited by neuropeptide Y injected into the nucleus tractus solitarius of the rat , 1991, Neuroscience Letters.
[135] M. Levin,et al. Physiological inputs regulate species-specific anatomy during embryogenesis and regeneration , 2016, Communicative & integrative biology.
[136] A. M. Ageel,et al. Effect of bromocriptine, a dopamine receptor agonist, on the experimentally induced gastric ulcers in albino rats. , 1984, Life sciences.
[137] Yongfu Wang,et al. Neuronal Gap Junction Coupling Is Regulated by Glutamate and Plays Critical Role in Cell Death during Neuronal Injury , 2012, The Journal of Neuroscience.
[138] H. Rubin. Ordered heterogeneity and its decline in cancer and aging. , 2007, Advances in cancer research.