3D level set method for blastomere segmentation of preimplantation embryos in fluorescence microscopy images

[1]  Alan Wee-Chung Liew,et al.  Segmentation of cell nuclei in fluorescence microscopy images: An integrated framework using level set segmentation and touching-cell splitting , 2016, Pattern Recognit..

[2]  Nils Norlin,et al.  Inverted light-sheet microscope for imaging mouse pre-implantation development , 2015, Nature Methods.

[3]  Rama Chellappa,et al.  Segmentation of Nuclei From 3D Microscopy Images of Tissue via Graphcut Optimization , 2016, IEEE Journal of Selected Topics in Signal Processing.

[4]  Fusheng Wang,et al.  Automated cell segmentation with 3D fluorescence microscopy images , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[5]  M. Zernicka-Goetz,et al.  Developmental plasticity, cell fate specification and morphogenesis in the early mouse embryo , 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.

[6]  Parvaneh Saeedi,et al.  Automatic blastomere detection in day 1 to day 2 human embryo images using partitioned graphs and ellipsoids , 2014, 2014 IEEE International Conference on Image Processing (ICIP).

[7]  Minjung Kang,et al.  Stem Cell Reports , Volume 2 Supplemental Information A Rapid and Efficient 2 D / 3 D Nuclear Segmentation Method for Analysis of Early Mouse Embryo and Stem Cell Image Data , 2014 .

[8]  Wolfgang Huber,et al.  Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages , 2013, Nature Cell Biology.

[9]  Sonja Nowotschin,et al.  Live imaging mouse embryonic development: seeing is believing and revealing. , 2014, Methods in molecular biology.

[10]  François Nédélec,et al.  A self-organization framework for symmetry breaking in the mammalian embryo , 2013, Nature Reviews Molecular Cell Biology.

[11]  Jeffrey J. Rodriguez,et al.  Size-invariant cell nucleus segmentation in 3-D microscopy , 2012, 2012 IEEE Southwest Symposium on Image Analysis and Interpretation.

[12]  K. Niakan,et al.  Human pre-implantation embryo development , 2012, Development.

[13]  Janet Rossant,et al.  Disorganized epithelial polarity and excess trophectoderm cell fate in preimplantation embryos lacking E-cadherin , 2010, Development.

[14]  P. Bourgine,et al.  Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy , 2010, Science.

[15]  G. Malandain,et al.  Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution , 2010, Nature Methods.

[16]  Erik Meijering,et al.  Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy" , 2010, IEEE Trans. Medical Imaging.

[17]  Luca Maria Gambardella,et al.  Blastomere segmentation and 3D morphology measurements of early embryos from Hoffman Modulation Contrast image stacks , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[18]  Yousef Al-Kofahi,et al.  Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images , 2010, IEEE Transactions on Biomedical Engineering.

[19]  Wiro J. Niessen,et al.  Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy , 2010, IEEE Transactions on Medical Imaging.

[20]  B. Maro,et al.  Orientation of Mitotic Spindles during the 8- to 16-Cell Stage Transition in Mouse Embryos , 2009, PloS one.

[21]  A. Parker,et al.  Cost-Effectiveness of an Intervention to Reduce Emergency Re-Admissions to Hospital among Older Patients , 2009, PloS one.

[22]  Samantha A. Morris,et al.  Making a firm decision: multifaceted regulation of cell fate in the early mouse embryo , 2009, Nature Reviews Genetics.

[23]  Stephen T. C. Wong,et al.  3D cell nuclei segmentation based on gradient flow tracking , 2007, BMC Cell Biology.

[24]  L. Luo,et al.  A global double‐fluorescent Cre reporter mouse , 2007, Genesis.

[25]  Rachid Deriche,et al.  A Review of Statistical Approaches to Level Set Segmentation: Integrating Color, Texture, Motion and Shape , 2007, International Journal of Computer Vision.

[26]  Thomas Brox,et al.  Universität Des Saarlandes Fachrichtung 6.1 – Mathematik Level Set Segmentation with Multiple Regions Level Set Segmentation with Multiple Regions , 2022 .

[27]  Carlos Vázquez,et al.  Multiregion competition: A level set extension of region competition to multiple region image partitioning , 2006, Comput. Vis. Image Underst..

[28]  Christophe Zimmer,et al.  Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces , 2005, IEEE Transactions on Image Processing.

[29]  Yonggang Shi,et al.  A FAST IMPLEMENTATION OF THE LEVEL SET METHOD WITHOUT SOLVING PARTIAL DIFFERENTIAL EQUATIONS , 2005 .

[30]  Dimitris N. Metaxas,et al.  MetaMorphs: Deformable shape and texture models , 2004, Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..

[31]  J. Rossant,et al.  Emerging asymmetry and embryonic patterning in early mouse development. , 2004, Developmental cell.

[32]  C Wählby,et al.  Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections , 2004, Journal of microscopy.

[33]  R. Malladi,et al.  Segmentation of nuclei and cells using membrane related protein markers , 2001, Journal of microscopy.

[34]  Roman Goldenberg,et al.  Fast Geodesic Active Contours , 1999, Scale-Space.

[35]  Alan L. Yuille,et al.  Region Competition: Unifying Snakes, Region Growing, and Bayes/MDL for Multiband Image Segmentation , 1996, IEEE Trans. Pattern Anal. Mach. Intell..

[36]  J A Sethian,et al.  A fast marching level set method for monotonically advancing fronts. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Tai Sing Lee,et al.  Region competition: unifying snakes, region growing, energy/Bayes/MDL for multi-band image segmentation , 1995, Proceedings of IEEE International Conference on Computer Vision.

[38]  R. Kimmel,et al.  Geodesic Active Contours , 1995, Proceedings of IEEE International Conference on Computer Vision.

[39]  J. Sethian,et al.  A Fast Level Set Method for Propagating Interfaces , 1995 .

[40]  Fernand Meyer,et al.  Topographic distance and watershed lines , 1994, Signal Process..

[41]  Douglas G. Altman,et al.  Practical statistics for medical research , 1990 .

[42]  J. Sethian,et al.  Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations , 1988 .

[43]  N. Hillman,et al.  The effect of spatial arrangement on cell determination during mouse development. , 1972, Journal of embryology and experimental morphology.

[44]  A. Tarkowski,et al.  Development of blastomeres of mouse eggs isolated at the 4- and 8-cell stage. , 1967, Journal of embryology and experimental morphology.

[45]  Ole Fogh Olsen,et al.  A multiphase variational level set approach for modelling human embryos , 2022 .