The polar night shift: seasonal dynamics and drivers of Arctic Ocean microbiomes revealed by autonomous sampling

[1]  S. Sunagawa,et al.  Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean , 2021, Nature Microbiology.

[2]  A. Boetius,et al.  Sea ice presence is linked to higher carbon export and vertical microbial connectivity in the Eurasian Arctic Ocean , 2021, Communications Biology.

[3]  R. Ganeshram,et al.  An Arctic Strait of Two Halves: The Changing Dynamics of Nutrient Uptake and Limitation Across the Fram Strait , 2021 .

[4]  I. Ferrera,et al.  Seasonal niche differentiation among closely related marine bacteria , 2021, The ISME journal.

[5]  R. Amann,et al.  Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms , 2021, PeerJ.

[6]  C. Lovejoy,et al.  A decadal perspective on north water microbial eukaryotes as Arctic Ocean sentinels , 2021, Scientific Reports.

[7]  J. Gasol,et al.  Phylogenetic diversity and dominant ecological traits of freshwater Antarctic Chrysophyceae , 2021, Polar Biology.

[8]  K. Præbel,et al.  Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard) , 2021, Frontiers in Microbiology.

[9]  T. Krumpen,et al.  Carbon Export in the Seasonal Sea Ice Zone North of Svalbard From Winter to Late Summer , 2021, Frontiers in Marine Science.

[10]  M. Schartau,et al.  Spatio-Temporal Variations in Community Size Structure of Arctic Protist Plankton in the Fram Strait , 2021, Frontiers in Marine Science.

[11]  L. Riemann,et al.  Nitrogen Fixation in a Changing Arctic Ocean: An Overlooked Source of Nitrogen? , 2020, Frontiers in Microbiology.

[12]  Christopher M. Horvat,et al.  Under-Ice Phytoplankton Blooms: Shedding Light on the “Invisible” Part of Arctic Primary Production , 2020, Frontiers in Marine Science.

[13]  F. Cottier,et al.  Implications of increasing Atlantic influence for Arctic microbial community structure , 2020, Scientific Reports.

[14]  J. Tison,et al.  The future of Arctic sea-ice biogeochemistry and ice-associated ecosystems , 2020, Nature Climate Change.

[15]  S. C. Tripathy,et al.  Interplay of regional oceanography and biogeochemistry on phytoplankton bloom development in an Arctic fjord , 2020 .

[16]  R. Stepanauskas,et al.  Lifting the Lid: Nitrifying Archaea Sustain Diverse Microbial Communities Below the Ross Ice Shelf , 2020 .

[17]  A. Boetius,et al.  Spatial Distribution of Arctic Bacterioplankton Abundance Is Linked to Distinct Water Masses and Summertime Phytoplankton Bloom Dynamics (Fram Strait, 79°N) , 2021, Frontiers in Microbiology.

[18]  F. D’Ortenzio,et al.  Arctic mid-winter phytoplankton growth revealed by autonomous profilers , 2020, Science Advances.

[19]  A. Engel,et al.  Dynamics of organic matter and bacterial activity in the Fram Strait during summer and autumn , 2020, Philosophical Transactions of the Royal Society A.

[20]  I. Obernosterer,et al.  Seasonal dynamics of prokaryotes and their associations with diatoms in the Southern Ocean as revealed by an autonomous sampler. , 2020, Environmental microbiology.

[21]  Elaina D. Graham,et al.  Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning , 2020, bioRxiv.

[22]  A. Boetius,et al.  Summertime Chlorophyll a and Particulate Organic Carbon Standing Stocks in Surface Waters of the Fram Strait and the Arctic Ocean (1991–2015) , 2020, Frontiers in Marine Science.

[23]  Kohske Takahashi,et al.  Welcome to the Tidyverse , 2019, J. Open Source Softw..

[24]  F. Cottier,et al.  Phytoplankton Seasonal Dynamics in Kongsfjorden, Svalbard and the Adjacent Shelf , 2019, The Ecosystem of Kongsfjorden, Svalbard.

[25]  J. Huisman,et al.  Scientists’ warning to humanity: microorganisms and climate change , 2019, Nature Reviews Microbiology.

[26]  I. Salter,et al.  Inter-Annual Variability of Organic Carbon Concentration in the Eastern Fram Strait During Summer (2009–2017) , 2019, Front. Mar. Sci..

[27]  I. Ferrera,et al.  Quantifying long-term recurrence in planktonic microbial eukaryotes. , 2019, Molecular ecology.

[28]  C. Duarte,et al.  Marked changes in diversity and relative activity of picoeukaryotes with depth in the global ocean , 2019, bioRxiv.

[29]  G. Underwood,et al.  Organic matter from Arctic sea-ice loss alters bacterial community structure and function , 2019, Nature Climate Change.

[30]  R. Sandaa,et al.  Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host–Viral Relationships in an Arctic Marine Ecosystem , 2018, Viruses.

[31]  A. Boetius,et al.  Microbial Communities in the East and West Fram Strait During Sea Ice Melting Season , 2018, Front. Mar. Sci..

[32]  B. Deagle,et al.  A globally distributed Syndiniales parasite dominates the Southern Ocean micro-eukaryote community near the sea-ice edge , 2018, The ISME Journal.

[33]  Wilken-Jon von Appen,et al.  Does the East Greenland Current exist in the northern Fram Strait? , 2018, Ocean Science.

[34]  D. Stoecker,et al.  Mixotrophic Plankton in the Polar Seas: A Pan-Arctic Review , 2018, Front. Mar. Sci..

[35]  R. Amann,et al.  Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans , 2018, The ISME Journal.

[36]  G. Bratbak,et al.  Seasonality of the Physical and Biogeochemical Hydrography in the Inflow to the Arctic Ocean Through Fram Strait , 2018, Front. Mar. Sci..

[37]  Pier Luigi Buttigieg,et al.  Marine microbes in 4D-using time series observation to assess the dynamics of the ocean microbiome and its links to ocean health. , 2018, Current opinion in microbiology.

[38]  A. Boetius,et al.  Effects of Ice-Algal Aggregate Export on the Connectivity of Bacterial Communities in the Central Arctic Ocean , 2018, Front. Microbiol..

[39]  Laura E. Lehtovirta-Morley.  Ammonia oxidation: Ecology, physiology, biochemistry and why they must all come together , 2018, FEMS microbiology letters.

[40]  Rasmus Hansen Kirkegaard,et al.  ampvis2: an R package to analyse and visualise 16S rRNA amplicon data , 2018, bioRxiv.

[41]  Alain Rapaport,et al.  Major changes in the composition of a Southern Ocean bacterial community in response to diatom‐derived dissolved organic matter , 2018, FEMS microbiology ecology.

[42]  J. Fuhrman,et al.  Short-term dynamics and interactions of marine protist communities during the spring–summer transition , 2018, The ISME Journal.

[43]  G. Bratbak,et al.  Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses , 2018, Front. Microbiol..

[44]  K. Arrigo,et al.  Microalgal community structure and primary production in Arctic and Antarctic sea ice: A synthesis , 2018 .

[45]  Jody J. Wright,et al.  Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients , 2017, Nature Communications.

[46]  T. Jung,et al.  Eddy-Resolving Simulation of the Atlantic Water Circulation in the Fram Strait With Focus on the Seasonal Cycle , 2017 .

[47]  L. Kaleschke,et al.  Protist Communities in Moored Long-Term Sediment Traps (Fram Strait, Arctic)–Preservation with Mercury Chloride Allows for PCR-Based Molecular Genetic Analyses , 2017, Front. Mar. Sci..

[48]  I. Peeken,et al.  Inter-annual variability of transparent exopolymer particles in the Arctic Ocean reveals high sensitivity to ecosystem changes , 2017, Scientific Reports.

[49]  J. Pinhassi,et al.  Marine Bacterioplankton Seasonal Succession Dynamics. , 2017, Trends in microbiology.

[50]  Torsten Kanzow,et al.  Greater role for Atlantic inflows on sea-ice loss in the Eurasian Basin of the Arctic Ocean , 2017, Science.

[51]  G. Bratbak,et al.  Changes in Marine Prokaryote Composition with Season and Depth Over an Arctic Polar Year , 2017, Front. Mar. Sci..

[52]  M. Cunliffe,et al.  Coastal bacterioplankton community response to diatom‐derived polysaccharide microgels , 2017, Environmental microbiology reports.

[53]  C. Bienhold,et al.  Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments , 2017, Front. Microbiol..

[54]  Hanna M. Kauko,et al.  Leads in Arctic pack ice enable early phytoplankton blooms below snow-covered sea ice , 2017, Scientific Reports.

[55]  Xiaowei Zhang,et al.  Where less may be more: how the rare biosphere pulls ecosystems strings , 2017, The ISME Journal.

[56]  M. Mußmann,et al.  Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments , 2017, The ISME Journal.

[57]  A. Chao,et al.  iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers) , 2016 .

[58]  H. Ducklow,et al.  Seasonal Succession of Free-Living Bacterial Communities in Coastal Waters of the Western Antarctic Peninsula , 2016, Front. Microbiol..

[59]  Melanie Bergmann,et al.  Natural variability or anthropogenically-induced variation? Insights from 15 years of multidisciplinary observations at the arctic marine LTER site HAUSGARTEN , 2016 .

[60]  J. Fuhrman,et al.  Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples. , 2016, Environmental microbiology.

[61]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[62]  U. Schauer,et al.  Seasonal Cycle of Mesoscale Instability of the West Spitsbergen Current , 2016 .

[63]  A. Wichels,et al.  Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level , 2016, Front. Microbiol..

[64]  F. Küpper,et al.  Zoosporic parasites infecting marine diatoms - A black box that needs to be opened. , 2016, Fungal ecology.

[65]  B. Beszteri,et al.  rRNA and rDNA based assessment of sea ice protist biodiversity from the central Arctic Ocean , 2016 .

[66]  C. Pedrós-Alió,et al.  Diversity of planktonic microorganisms in the Arctic Ocean , 2015 .

[67]  M. Gosselin,et al.  Arctic spring awakening – Steering principles behind the phenology of vernal ice algal blooms , 2015 .

[68]  A. Lopez-Urrutia,et al.  Seasonality in molecular and cytometric diversity of marine bacterioplankton: the re-shuffling of bacterial taxa by vertical mixing. , 2015, Environmental microbiology.

[69]  J. Berge,et al.  In the dark: A review of ecosystem processes during the Arctic polar night , 2015 .

[70]  R. Daniel,et al.  The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches , 2015, Front. Microbiol..

[71]  Luis Pedro Coelho,et al.  Structure and function of the global ocean microbiome , 2015, Science.

[72]  M. Reigstad,et al.  Seasonal variability and fluxes of nitrate in the surface waters over the Arctic shelf slope , 2015 .

[73]  Jung-Hyun Lee,et al.  Pyrosequencing Revealed SAR116 Clade as Dominant dddP-Containing Bacteria in Oligotrophic NW Pacific Ocean , 2015, PloS one.

[74]  Astrid Bracher,et al.  Summertime plankton ecology in Fram Strait—a compilation of long- and short-term observations , 2015 .

[75]  C. Lovejoy,et al.  Oceanographic structure drives the assembly processes of microbial eukaryotic communities , 2014, The ISME Journal.

[76]  J. Fuhrman,et al.  Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years , 2014, The ISME Journal.

[77]  C. Pedrós-Alió,et al.  Winter bloom of a rare betaproteobacterium in the Arctic Ocean , 2014, Front. Microbiol..

[78]  Raymond J. G. Leakey,et al.  Biological‐ and physical‐induced oxygen dynamics in melting sea ice of the Fram Strait , 2014 .

[79]  V. Shevchenko,et al.  Variability in under‐ice export fluxes of biogenic matter in the Arctic Ocean , 2014 .

[80]  Z. Cardman,et al.  Verrucomicrobia Are Candidates for Polysaccharide-Degrading Bacterioplankton in an Arctic Fjord of Svalbard , 2014, Applied and Environmental Microbiology.

[81]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[82]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[83]  Stéphane Audic,et al.  The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy , 2012, Nucleic Acids Res..

[84]  Alison S. Waller,et al.  Role for urea in nitrification by polar marine Archaea , 2012, Proceedings of the National Academy of Sciences.

[85]  T. Williams,et al.  Magnetospira thiophila gen. nov., sp. nov., a marine magnetotactic bacterium that represents a novel lineage within the Rhodospirillaceae (Alphaproteobacteria). , 2012, International journal of systematic and evolutionary microbiology.

[86]  R. Amann,et al.  Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom , 2012, Science.

[87]  T. Williams,et al.  A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters , 2012, The ISME Journal.

[88]  T. Williams,et al.  A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters , 2012, The ISME Journal.

[89]  Eduard Bauerfeind,et al.  Impact of a warm anomaly on export fluxes of biogenic matter in the eastern Fram Strait , 2012 .

[90]  E. Carmack,et al.  Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum , 2011, PloS one.

[91]  R. Knight,et al.  Defining seasonal marine microbial community dynamics , 2011, The ISME Journal.

[92]  Marcel Martin.  Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[93]  Lena Seuthe,et al.  Seasonal microbial processes in a high-latitude fjord (Kongsfjorden, Svalbard): I. Heterotrophic bacteria, picoplankton and nanoflagellates , 2011, Polar Biology.

[94]  S. Kawaguchi,et al.  Epibiotic suctorians and enigmatic ecto- and endoparasitoid dinoflagellates of euphausiid eggs (Euphausiacea) off Oregon, USA , 2009 .

[95]  I. Salter,et al.  Radiolaria: Major exporters of organic carbon to the deep ocean , 2009 .

[96]  N. Wasmund,et al.  100-years-changes in the phytoplankton community of Kiel Bight (Baltic Sea) , 2008 .

[97]  C. Pedrós-Alió,et al.  Winter-to-summer changes in the composition and single-cell activity of near-surface Arctic prokaryotes. , 2008, Environmental microbiology.

[98]  J. Dutz,et al.  Zooplankton grazing on Phaeocystis: a quantitative review and future challenges , 2007 .

[99]  N. Lundholm,et al.  Effect of pH on growth and domoic acid production by potentially toxic diatoms of the genera Pseudo-nitzschia and Nitzschia , 2004 .

[100]  S. Cummings,et al.  Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica. , 2001, International journal of systematic and evolutionary microbiology.

[101]  E. Fahrbach,et al.  Direct measurements of volume transports through Fram Strait , 2001 .

[102]  A. Alldredge,et al.  Direct observations of the mass flocculation of diatom blooms: characteristics, settling velocities and formation of diatom aggregates , 1989 .

[103]  G. Johnsen,et al.  Marine Micro- and Macroalgae in the Polar Night , 2020 .

[104]  POLAR NIGHT Marine Ecology: Life and Light in the Dead of Night , 2020 .

[105]  T. Gabrielsen,et al.  Key Arctic phototrophs are widespread in the polar night , 2014, Polar Biology.

[106]  D. Vaulot,et al.  Diversity and Ecology of Eukaryotic Marine Phytoplankton , 2012 .

[107]  R. Hill,et al.  Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges , 2010, The ISME Journal.

[108]  J. Nielsen,et al.  Abundance and ecophysiology of Defluviicoccus spp., glycogen-accumulating organisms in full-scale wastewater treatment processes. , 2007, Microbiology.

[109]  M. Brichta.  The role of life cycle stages of diatoms in decoupling carbon and silica cycles in polar regions , 2004 .

[110]  S. Raghukumar.  Ecology of the marine protists, the Labyrinthulomycetes (Thraustochytrids and Labyrinthulids) , 2002 .