Fast and Accurate Estimation of the HARDI Signal in Diffusion MRI Using a Nearest-Neighbor Interpolation Approach

Abstract In the diffusion MRI domain, the HARDI methods were proposed to better characterize the complex biological tissues such as the white matter. In fact, they allow to overcome the problem of crossing fibers detection in the case of the Diffusion Tensor Imaging (DTI). However, the HARDI technique requires a very large number of Diffusion Weighted (DW) magnetic resonance images and thus it takes a long acquisition time, restricting its use in the clinical practice. We propose, in this paper, to develop a novel method for accelerating the reconstruction of the HARDI signal from a few number of DW images of the brain. The approach is a triangulation-based geometrical interpolation of existing signals. It consists on recovering non-acquired data according to their neighborhood from a reduced set of diffusion orientations on the sphere of the q-space. The accuracy of the proposed method was performed on two different phantom datasets for a qualitative and quantitative evaluation against known ground truths. We test also the robustness of the proposed approach under the noise. The obtained results demonstrate that the novel method can approximately halve the scan time and simultaneously obtain a proper fiber orientation estimation. In fact, the estimated FOD (e.g. FOD, Fiber Orientation Distribution) function based on only 34 directions is nearly identical to the one calculated with the full HARDI acquisitions (65 directions). Comparative evaluation on standard phantoms show that the proposed approach outperforms a large selection of methods of state-of-the-art according to the success rate and the angular error criteria.

[1]  R. Deriche,et al.  Design of multishell sampling schemes with uniform coverage in diffusion MRI , 2013, Magnetic resonance in medicine.

[2]  Yogesh Rathi,et al.  Fast and Accurate Reconstruction of HARDI Data Using Compressed Sensing , 2010, MICCAI.

[3]  Jean-Philippe Thiran,et al.  Structured sparsity for spatially coherent fibre orientation estimation in diffusion MRI , 2015, NeuroImage.

[4]  Rachid Deriche,et al.  Parametric Dictionary Learning for Modeling EAP and ODF in Diffusion MRI , 2012, MICCAI.

[5]  D. L. Donoho,et al.  Compressed sensing , 2006, IEEE Trans. Inf. Theory.

[6]  Mariano Rivera,et al.  Diffusion Basis Functions Decomposition for Estimating White Matter Intravoxel Fiber Geometry , 2007, IEEE Transactions on Medical Imaging.

[7]  Faouzi Ghorbel,et al.  A Novel Geometrical Approach for a Rapid Estimation of the HARDI Signal in Diffusion MRI , 2016, ICISP.

[8]  Alan Connelly,et al.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution , 2004, NeuroImage.

[9]  Rachid Deriche,et al.  Optimal real-time Q-ball imaging using regularized Kalman filtering with incremental orientation sets , 2009, Medical Image Anal..

[10]  F. Calamante,et al.  How many diffusion gradient directions are required for HARDI , 2009 .

[11]  D. Tuch Q‐ball imaging , 2004, Magnetic resonance in medicine.

[12]  R. Deriche,et al.  Regularized, fast, and robust analytical Q‐ball imaging , 2007, Magnetic resonance in medicine.

[13]  Lester Melie-García,et al.  Deconvolution in diffusion spectrum imaging , 2010, NeuroImage.

[14]  O. Ciccarelli,et al.  Diffusion MRI in multiple sclerosis , 2005, Neurology.

[15]  Xavier Bresson,et al.  Representing Diffusion MRI in 5-D Simplifies Regularization and Segmentation of White Matter Tracts , 2007, IEEE Transactions on Medical Imaging.

[16]  M. Catani,et al.  Diffusion-based tractography in neurological disorders: concepts, applications, and future developments , 2008, The Lancet Neurology.

[17]  Chris A Clark,et al.  White matter fiber tracking in patients with space-occupying lesions of the brain: a new technique for neurosurgical planning? , 2003, NeuroImage.

[18]  Ching-Po Lin,et al.  Potential in reducing scan times of HARDI by accurate correction of the cross‐term in a hemispherical encoding scheme , 2009, Journal of magnetic resonance imaging : JMRI.

[19]  Shantanu H. Joshi,et al.  Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease , 2015, Neurobiology of Aging.

[20]  Carl-Fredrik Westin,et al.  Probabilistic ODF Estimation from Reduced HARDI Data with Sparse Regularization , 2011, MICCAI.

[21]  Jean-Philippe Thiran,et al.  Sparse regularization for fiber ODF reconstruction: from the suboptimality of $\ell_2$ and $\ell_1$ priors to $\ell_0$ , 2012, 1208.2247.

[22]  Remco Duits,et al.  Improving Fiber Alignment in HARDI by Combining Contextual PDE Flow with Constrained Spherical Deconvolution , 2015, PloS one.

[23]  Mathews Jacob,et al.  Acceleration of high angular and spatial resolution diffusion imaging using compressed sensing with multichannel spiral data , 2015, Magnetic resonance in medicine.

[24]  P. Callaghan,et al.  RAPID COMMUNICATION: NMR microscopy of dynamic displacements: k-space and q-space imaging , 1988 .

[25]  Per Christian Hansen,et al.  REGULARIZATION TOOLS: A Matlab package for analysis and solution of discrete ill-posed problems , 1994, Numerical Algorithms.

[26]  P. Basser,et al.  MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.

[27]  J. Thiran,et al.  Understanding diffusion MR imaging techniques: from scalar diffusion-weighted imaging to diffusion tensor imaging and beyond. , 2006, Radiographics : a review publication of the Radiological Society of North America, Inc.

[28]  Alan Connelly,et al.  Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution , 2007, NeuroImage.

[29]  Rachid Deriche,et al.  Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI , 2014, IEEE Transactions on Medical Imaging.

[30]  Rodney A. Kennedy,et al.  On the Use of Antipodal Optimal Dimensionality Sampling Scheme on the Sphere for Recovering Intra-Voxel Fibre Structure in Diffusion MRI , 2016 .

[31]  A. Connelly,et al.  Determination of the appropriate b value and number of gradient directions for high‐angular‐resolution diffusion‐weighted imaging , 2013, NMR in biomedicine.

[32]  Sylvain Merlet,et al.  Compressive sensing in diffusion MRI , 2013 .

[33]  V. Wedeen,et al.  Mapping fiber orientation spectra in cerebral white matter with Fourier-transform diffusion MRI , 2000 .

[34]  Chun-Hung Yeh,et al.  Diffusion orientation transform revisited , 2010, NeuroImage.

[35]  M. Horsfield,et al.  Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging , 1999, Magnetic resonance in medicine.