Software and database for the analysis of mutations in the human LDL receptor gene

The low-density lipoprotein receptor (LDLr) plays a pivotal role in cholesterol homeostasis. Mutations in the LDLr gene (LDLR), which is located on chromosome 19, cause familial hypercholesterolemia (FH), an autosomal dominant disorder characterized by severe hypercholesterolemia associated with premature coronary atherosclerosis. To date almost 300 mutations have been identified in the LDLR gene. To facilitate the mutational analysis of the LDLR gene, and promote the analysis of the relationship between genotype and phenotype, a software package along with a computerized database (currently listing 210 entries) have been created.

[1]  A. Soutar,et al.  Characterization of two new point mutations in the low density lipoprotein receptor genes of an English patient with homozygous familial hypercholesterolemia. , 1992, Journal of lipid research.

[2]  M. Kotze,et al.  Screening for mutations in exon 4 of the LDL receptor gene: identification of a new deletion mutation. , 1995, Journal of medical genetics.

[3]  D. Russell,et al.  The low density lipoprotein receptor. Identification of amino acids in cytoplasmic domain required for rapid endocytosis. , 1987, The Journal of biological chemistry.

[4]  S. Tonstad,et al.  A common missense mutation (C210G) in the LDL receptor gene among Norwegian familial hypercholesterolemia subjects , 1996, Human mutation.

[5]  G. Coetzee,et al.  Two common low density lipoprotein receptor gene mutations cause familial hypercholesterolemia in Afrikaners. , 1989, The Journal of clinical investigation.

[6]  D. Russell,et al.  Receptor-mediated endocytosis: concepts emerging from the LDL receptor system. , 1985, Annual review of cell biology.

[7]  K Kontula,et al.  The familial hypercholesterolemia (FH)-North Karelia mutation of the low density lipoprotein receptor gene deletes seven nucleotides of exon 6 and is a common cause of FH in Finland. , 1992, The Journal of clinical investigation.

[8]  V. Gudnason,et al.  Identification of recurrent and novel mutations in exon 4 of the LDL receptor gene in patients with familial hypercholesterolemia in the United Kingdom. , 1993, Arteriosclerosis and Thrombosis A Journal of Vascular Biology.

[9]  G. Schlüter,et al.  An 87 bp deletion in exon 5 of the LDL receptor gene in a mother and her son with familial hypercholesterolemia , 1994, Clinical genetics.

[10]  N. Gregersen,et al.  Identification of a novel mutation in exon 13 of the LDL receptor gene causing familial hypercholesterolemia in two Spanish families. , 1996, Biochimica et biophysica acta.

[11]  V. Gudnason,et al.  Identification of the 664 proline to leucine mutation in the low density lipoprotein receptor in four unrelated patients with familial hypercholesterolaemia in the UK , 1991, Clinical genetics.

[12]  M. Kotze,et al.  The identification of two low-density lipoprotein receptor gene mutations in South African familial hypercholesterolaemia. , 1989, South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde.

[13]  M. Kotze,et al.  A de novo duplication in the low density lipoprotein receptor gene , 1995, Human mutation.

[14]  A. Soutar,et al.  Identification of a point mutation in growth factor repeat C of the low density lipoprotein-receptor gene in a patient with homozygous familial hypercholesterolemia that affects ligand binding and intracellular movement of receptors. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[15]  G. Coetzee,et al.  A common Lithuanian mutation causing familial hypercholesterolemia in Ashkenazi Jews. , 1991, American journal of human genetics.

[16]  M. Brown,et al.  NPXY, a sequence often found in cytoplasmic tails, is required for coated pit-mediated internalization of the low density lipoprotein receptor. , 1990, The Journal of biological chemistry.

[17]  T. Südhof,et al.  The LDL receptor gene: a mosaic of exons shared with different proteins. , 1985, Science.

[18]  Thierry Soussi,et al.  APC gene: database of germline and somatic mutations in human tumors and cell lines , 1996, Nucleic Acids Res..

[19]  S. Tonstad,et al.  Two novel missense mutations in the LDL receptor gene causing familial hypercholesterolemia , 1996, Clinical genetics.

[20]  J. Viikari,et al.  Molecular characterization of minor gene rearrangements in Finnish patients with heterozygous familial hypercholesterolemia: identification of two common missense mutations (Gly823-->Asp and Leu380-->His) and eight rare mutations of the LDL receptor gene. , 1995, American journal of human genetics.

[21]  S. Easteal,et al.  FH‐Sydney 1 and 2: Two novel frameshift mutations in exon 10 of the low‐density lipoprotein receptor gene detected by heteroduplex formation , 1994, Human mutation.

[22]  J. Després,et al.  Detection of a novel mutation (stop 468) in exon 10 of the low-density lipoprotein receptor gene causing familial hypercholesterolemia among French Canadians. , 1994, Human molecular genetics.

[23]  Joseph L. Goldstein,et al.  Internalization-defective LDL receptors produced by genes with nonsense and frameshift mutations that truncate the cytoplasmic domain , 1985, Cell.

[24]  I. Young,et al.  Three novel mutations in the EGF precursor homology domain of the low‐density lipoprotein receptor gene in Northern Irish patients with familial hypercholesterolemia , 1995, Human mutation.

[25]  C. Junien,et al.  Screening for new mutations in the LDL receptor gene in seven French familial hypercholesterolemia families by the single strand conformation polymorphism method , 1992, Human mutation.

[26]  S. Tonstad,et al.  Familial hypercholesterolaemia caused by a non-sense mutation in codon 329 of the LDL receptor gene. , 1994, Scandinavian journal of clinical and laboratory investigation.

[27]  T. Funahashi,et al.  A point mutation of low-density-lipoprotein receptor causing rapid degradation of the receptor. , 1992, European journal of biochemistry.

[28]  G. Coetzee,et al.  A nonsense mutation in the LDL receptor gene leads to familial hypercholesterolemia in the Druze sect. , 1992, American journal of human genetics.

[29]  Richard G. W. Anderson,et al.  The J. D. mutation in familial hypercholesterolemia: Amino acid substitution in cytoplasmic domain impedes internalization of LDL receptors , 1986, Cell.

[30]  G. Coetzee,et al.  Identification of two new LDL-receptor mutations causing homozygous familial hypercholesterolemia in a South African of Indian origin. , 1993, Biochimica et biophysica acta.

[31]  D. Russell,et al.  Deletion in cysteine-rich region of LDL receptor impedes transport to cell surface in WHHL rabbit. , 1986, Science.

[32]  T. Funahashi,et al.  Common mutations in the low-density-lipoprotein-receptor gene causing familial hypercholesterolemia in the Japanese population. , 1995, Arteriosclerosis, thrombosis, and vascular biology.

[33]  N. Gregersen,et al.  Two point mutations (313 + 1G→A and 313 + 1G→T) in the splice donor site of intron 3 of the low‐density lipoprotein receptor gene are associated with familial hypercholesterolemia , 1996, Human mutation.

[34]  H. Schuster,et al.  Ten LDL receptor mutants explain one third of familial hypercholesterolemia in a German sample. , 1995, Arteriosclerosis, thrombosis, and vascular biology.

[35]  A. Soutar,et al.  Familial hypercholesterolemia in China. Identification of mutations in the LDL-receptor gene that result in a receptor-negative phenotype. , 1994, Arteriosclerosis and thrombosis : a journal of vascular biology.

[36]  H. Hobbs,et al.  Evidence for a dominant gene that suppresses hypercholesterolemia in a family with defective low density lipoprotein receptors. , 1989, The Journal of clinical investigation.

[37]  M. Kotze,et al.  The molecular basis and diagnosis of familial hypercholesterolaemia in South African Afrikaners , 1991, Annals of human genetics.

[38]  L. Bolund,et al.  Characterization of a disease‐causing Glu119‐Lys mutation in the low‐density lipoprotein receptor gene in two Danish families with heterozygous familial hypercholesterolemia , 1994, Human mutation.

[39]  L. Tsui,et al.  A suggested nomenclature for designating mutations , 1993, Human mutation.

[40]  C. Shoulders,et al.  Genetic variation at a splicing branch point in intron 9 of the low density lipoprotein (LDL)-receptor gene: a rare mutation that disrupts mRNA splicing in a patient with familial hypercholesterolaemia and a common polymorphism. , 1996, Human molecular genetics.

[41]  O. Faergeman,et al.  An Iranian‐Armenian LDLR frameshift mutation causing familial hypercholesterolemia , 1996, Clinical genetics.

[42]  U. Francke,et al.  Human genes involved in cholesterol metabolism: chromosomal mapping of the loci for the low density lipoprotein receptor and 3-hydroxy-3-methylglutaryl-coenzyme A reductase with cDNA probes. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[43]  R. Winkelmann The Metabolic Basis of Inherited Diseases , 1972 .

[44]  D. Russell,et al.  Deletion of clustered O-linked carbohydrates does not impair function of low density lipoprotein receptor in transfected fibroblasts. , 1986, The Journal of biological chemistry.

[45]  O. Jänne,et al.  A single-base substitution in the proximal Sp1 site of the human low density lipoprotein receptor promoter as a cause of heterozygous familial hypercholesterolemia. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[46]  H. Hobbs,et al.  The LDL receptor locus in familial hypercholesterolemia: mutational analysis of a membrane protein. , 1990, Annual review of genetics.

[47]  E. Sijbrands,et al.  Mutations in the low density lipoprotein receptor gene of familial hypercholesterolemic patients detected by denaturing gradient gel electrophoresis and direct sequencing. , 1995, Journal of lipid research.

[48]  T. Foulon,et al.  Identification of a mutation, N543H, in exon 11 of the low‐density lipoprotein receptor gene in a French family with familial hypercholesterolemia , 1995, Human mutation.

[49]  D. Russell,et al.  The human LDL receptor: A cysteine-rich protein with multiple Alu sequences in its mRNA , 1984, Cell.

[50]  Richard G. W. Anderson,et al.  Acid-dependent ligand dissociation and recycling of LDL receptor mediated by growth factor homology region , 1987, Nature.

[51]  D. Russell,et al.  The Lebanese allele at the low density lipoprotein receptor locus. Nonsense mutation produces truncated receptor that is retained in endoplasmic reticulum. , 1987, The Journal of biological chemistry.

[52]  H. Hobbs,et al.  Common low-density lipoprotein receptor mutations in the French Canadian population. , 1990, The Journal of clinical investigation.

[53]  M. Kotze,et al.  Molecular characterisation of a low-frequency mutation in exon 8 of the human low-density lipoprotein receptor gene. , 1989, South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde.

[54]  G. Coetzee,et al.  Deletion in the first cysteine-rich repeat of low density lipoprotein receptor impairs its transport but not lipoprotein binding in fibroblasts from a subject with familial hypercholesterolemia. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[55]  A. Soutar,et al.  A mutation (T-45C) in the promoter region of the low-density-lipoprotein (LDL)-receptor gene is associated with a mild clinical phenotype in a patient with heterozygous familial hypercholesterolaemia (FH). , 1995, Human molecular genetics.

[56]  H. Hobbs,et al.  Molecular genetics of the LDL receptor gene in familial hypercholesterolemia , 1992, Human mutation.

[57]  L. Bolund,et al.  An LDL receptor promoter mutation in a heterozygous FH patient with dramatically skewed ratio between the two allelic mRNA variants , 1996, Human mutation.

[58]  A. Soutar,et al.  Characterization of mutations in the low density lipoprotein (LDL)-receptor gene in patients with homozygous familial hypercholesterolemia, and frequency of these mutations in FH patients in the United Kingdom. , 1996, Journal of lipid research.

[59]  R. Tiozzo,et al.  Occurrence of multiple aberrantly spliced mRNAs of the LDL-receptor gene upon a donor splice site mutation that causes familial hypercholesterolemia (FHBenevento). , 1995, Journal of lipid research.