Combining sensitive database searches with multiple intermediates to detect distant homologues.
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C A Orengo | M B Swindells | A A Salamov | C. Orengo | M. Swindells | A. Salamov | M. Suwa | M Suwa | Christine A. Orengo
[1] E V Koonin,et al. Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search. , 1994, Journal of molecular biology.
[2] C. Sander,et al. Database of homology‐derived protein structures and the structural meaning of sequence alignment , 1991, Proteins.
[3] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[4] R. Quatrano. Genomics , 1998, Plant Cell.
[5] S F Altschul,et al. Local alignment statistics. , 1996, Methods in enzymology.
[6] E. G. Shpaer,et al. Sensitivity and selectivity in protein similarity searches: a comparison of Smith-Waterman in hardware to BLAST and FASTA. , 1996, Genomics.
[7] Sean R. Eddy,et al. Pfam: multiple sequence alignments and HMM-profiles of protein domains , 1998, Nucleic Acids Res..
[8] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.
[9] M. O. Dayhoff,et al. Atlas of protein sequence and structure , 1965 .
[10] C. Chothia,et al. Intermediate sequences increase the detection of homology between sequences. , 1997, Journal of molecular biology.
[11] S. Karlin,et al. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[12] John P. Overington,et al. A structural basis for sequence comparisons. An evaluation of scoring methodologies. , 1993, Journal of molecular biology.
[13] W. Pearson. Effective protein sequence comparison. , 1996, Methods in enzymology.
[14] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[15] M Gribskov,et al. Translational initiation factors IF-1 and eIF-2 alpha share an RNA-binding motif with prokaryotic ribosomal protein S1 and polynucleotide phosphorylase. , 1992, Gene.
[16] O. Gotoh. An improved algorithm for matching biological sequences. , 1982, Journal of molecular biology.
[17] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[18] David C. Jones,et al. CATH--a hierarchic classification of protein domain structures. , 1997, Structure.
[19] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[20] C Sander,et al. An evolutionary treasure: unification of a broad set of amidohydrolases related to urease , 1997, Proteins.
[21] R. Abagyan,et al. Do aligned sequences share the same fold? , 1997, Journal of molecular biology.
[22] A. Mclachlan. Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c 551 . , 1971, Journal of molecular biology.
[23] W. Pearson. Comparison of methods for searching protein sequence databases , 1995, Protein science : a publication of the Protein Society.
[24] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[25] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[26] G. Gonnet,et al. Exhaustive matching of the entire protein sequence database. , 1992, Science.