The evolution of modularity in bacterial metabolic networks
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[1] N H Horowitz,et al. On the Evolution of Biochemical Syntheses. , 1945, Proceedings of the National Academy of Sciences of the United States of America.
[2] W. Fitch. Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology , 1971 .
[3] J R Roth,et al. Selfish operons: horizontal transfer may drive the evolution of gene clusters. , 1996, Genetics.
[4] M Achtman,et al. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[5] Doolittle Wf. Phylogenetic Classification and the Universal Tree , 1999 .
[6] L. Orgel,et al. Phylogenetic Classification and the Universal Tree , 1999 .
[7] J. Hopfield,et al. From molecular to modular cell biology , 1999, Nature.
[8] G. Wagner,et al. Natural Selection and the Origin of Modules , 2001 .
[9] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[10] An-Ping Zeng,et al. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms , 2003, Bioinform..
[11] Wen-Hsiung Li,et al. Evolution of the yeast protein interaction network , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[12] D. Pe’er,et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data , 2003, Nature Genetics.
[13] C. Wilke,et al. Evolution of mutational robustness. , 2003, Mutation research.
[14] A. Arkin,et al. Motifs, modules and games in bacteria. , 2003, Current opinion in microbiology.
[15] Alexander Rives,et al. Modular organization of cellular networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[16] S. Rafii,et al. Splitting vessels: Keeping lymph apart from blood , 2003, Nature Medicine.
[17] Berend Snel,et al. Quantifying modularity in the evolution of biomolecular systems. , 2004, Genome research.
[18] D. Koller,et al. A module map showing conditional activity of expression modules in cancer , 2004, Nature Genetics.
[19] Yan Boucher,et al. Phylogenetic reconstruction and lateral gene transfer. , 2004, Trends in microbiology.
[20] H. Matsuda,et al. Biased biological functions of horizontally transferred genes in prokaryotic genomes , 2004, Nature Genetics.
[21] Paul B Rainey,et al. Evolution of bacterial diversity and the origins of modularity. , 2004, Research in microbiology.
[22] A. Wagner. Robustness and Evolvability in Living Systems , 2005 .
[23] Sarah A Teichmann,et al. Novel specificities emerge by stepwise duplication of functional modules. , 2005, Genome research.
[24] C. Pál,et al. Adaptive evolution of bacterial metabolic networks by horizontal gene transfer , 2005, Nature Genetics.
[25] G. Church,et al. Expression dynamics of a cellular metabolic network , 2005, Molecular systems biology.
[26] U. Alon,et al. Spontaneous evolution of modularity and network motifs. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[27] B. Snel,et al. Toward Automatic Reconstruction of a Highly Resolved Tree of Life , 2006, Science.
[28] D. Segrè,et al. Supporting Online Material Materials and Methods Tables S1 and S2 References the Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life , 2022 .
[29] M E J Newman,et al. Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[30] P. Bork,et al. Identification and analysis of evolutionarily cohesive functional modules in protein networks. , 2006, Genome research.
[31] C. Wilke,et al. Robustness and Evolvability in Living Systems , 2006 .
[32] Eduardo P C Rocha,et al. Replication‐associated gene dosage effects shape the genomes of fast‐growing bacteria but only for transcription and translation genes , 2006, Molecular microbiology.
[33] Andrey A Mironov,et al. A metabolic network in the evolutionary context: multiscale structure and modularity. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[34] Uri Alon,et al. Varying environments can speed up evolution , 2007, Proceedings of the National Academy of Sciences.
[35] Uri Gophna,et al. Complexity, connectivity, and duplicability as barriers to lateral gene transfer , 2007, Genome Biology.
[36] Jing Zhao,et al. Modular co-evolution of metabolic networks , 2007, BMC Bioinformatics.
[37] U. Alon,et al. Environmental variability and modularity of bacterial metabolic networks , 2007, BMC Evolutionary Biology.
[38] Arend Hintze,et al. Evolution of Complex Modular Biological Networks , 2007, PLoS Comput. Biol..