Functional and comparative genomics analyses of pmp 22 in medaka fish

Background: Pmp22, a member of the junction protein family Claudin/EMP/PMP22, plays an important role in myelin formation. Increase of pmp22 transcription causes peripheral neuropathy, Charcot-MarieTooth disease type1A (CMT1A). The pathophysiological phenotype of CMT1A is aberrant axonal myelination which induces a reduction in nerve conduction velocity (NCV). Several CMT1A model rodents have been established by overexpressing pmp22. Thus, it is thought that pmp22 expression must be tightly regulated for correct myelin formation in mammals. Interestingly, the myelin sheath is also present in other jawed vertebrates. The purpose of this study is to analyze the evolutionary conservation of the association between pmp22 transcription level and vertebrate myelin formation, and to find the conserved non-coding sequences for pmp22 regulation by comparative genomics analyses between jawed fishes and mammals. Results: A transgenic pmp22 over-expression medaka fish line was established. The transgenic fish had approximately one fifth the peripheral NCV values of controls, and aberrant myelination of transgenic fish in the peripheral nerve system (PNS) was observed. We successfully confirmed that medaka fish pmp22 has the same exon-intron structure as mammals, and identified some known conserved regulatory motifs. Furthermore, we found novel conserved sequences in the first intron and 3'UTR. Conclusion: Medaka fish undergo abnormalities in the PNS when pmp22 transcription increases. This result indicates that an adequate pmp22 transcription level is necessary for correct myelination of jawed vertebrates. Comparison of pmp22 orthologs between distantly related species identifies evolutionary conserved sequences that contribute to precise regulation of pmp22 expression. Published: 17 June 2009 BMC Neuroscience 2009, 10:60 doi:10.1186/1471-2202-10-60 Received: 11 February 2009 Accepted: 17 June 2009 This article is available from: http://www.biomedcentral.com/1471-2202/10/60 © 2009 Itou et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

[1]  L. Notterpek,et al.  Peripheral myelin protein 22 is regulated post‐transcriptionally by miRNA‐29a , 2009, Glia.

[2]  L. Notterpek,et al.  Identification of Dynamically Regulated MicroRNA and mRNA Networks in Developing Oligodendrocytes , 2008, The Journal of Neuroscience.

[3]  L. Sommer,et al.  Development of the Schwann cell lineage: From the neural crest to the myelinated nerve , 2008, Glia.

[4]  S. Rangaraju,et al.  Pharmacological induction of the heat shock response improves myelination in a neuropathic model , 2008, Neurobiology of Disease.

[5]  Tanya Vavouri,et al.  Tuning in to the signals: noncoding sequence conservation in vertebrate genomes. , 2008, Trends in genetics : TIG.

[6]  R. Bergeron,et al.  Sustained saturating level of glycine induces changes in NR2B‐containing‐NMDA receptor localization in the CA1 region of the hippocampus , 2008, Journal of neurochemistry.

[7]  Richard R Copley,et al.  The animal in the genome: comparative genomics and evolution , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[8]  H. Takeda Draft genome of the medaka fish: A comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology , 2008, Development, growth & differentiation.

[9]  Ole Winther,et al.  JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update , 2007, Nucleic Acids Res..

[10]  R. Nagarajan,et al.  Interactions of Sox10 and Egr2 in myelin gene regulation. , 2007, Neuron glia biology.

[11]  R. Schmidt,et al.  Misexpression of Pou3f1 Results in Peripheral Nerve Hypomyelination and Axonal Loss , 2007, The Journal of Neuroscience.

[12]  P. Walker,et al.  Evolution of motif variants and positional bias of the cyclic-AMP response element , 2007, BMC Evolutionary Biology.

[13]  D. Hartline,et al.  Rapid Conduction and the Evolution of Giant Axons and Myelinated Fibers , 2007, Current Biology.

[14]  Justin Johnson,et al.  Ancient Noncoding Elements Conserved in the Human Genome , 2006, Science.

[15]  K. Nave,et al.  Animal models of inherited neuropathies , 2006, Current opinion in neurology.

[16]  U. Suter,et al.  Schwann cells and the pathogenesis of inherited motor and sensory neuropathies (Charcot‐Marie‐Tooth disease) , 2006, Glia.

[17]  J. Svaren,et al.  In vivo detection of Egr2 binding to target genes during peripheral nerve myelination , 2006, Journal of neurochemistry.

[18]  Graziano Pesole,et al.  MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes , 2006, Nucleic Acids Res..

[19]  L. Notterpek,et al.  Alterations in degradative pathways and protein aggregation in a neuropathy model based on PMP22 overexpression , 2006, Neurobiology of Disease.

[20]  C. Wessig,et al.  Evidence for macrophage‐mediated myelin disruption in an animal model for Charcot‐Marie‐Tooth neuropathy type 1A , 2005, Journal of neuroscience research.

[21]  R. Campbell,et al.  Myelin Tetraspan Family Proteins but No Non-Tetraspan Family Proteins Are Present in the Ascidian (Ciona intestinalis) Genome , 2005, The Biological Bulletin.

[22]  M. Guiot,et al.  An 8.5‐kb segment of the PMP22 promoter responds to loss of axon signals during Wallerian degeneration, but does not respond to specific axonal signals during nerve regeneration , 2005, Journal of neuroscience research.

[23]  Klaudia Walter,et al.  Open access, freely available online PLoS BIOLOGY Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development , 2022 .

[24]  Ivan Ovcharenko,et al.  Interpreting mammalian evolution using Fugu genome comparisons. , 2004, Genomics.

[25]  John Postlethwait,et al.  Subfunction partitioning, the teleost radiation and the annotation of the human genome. , 2004, Trends in genetics : TIG.

[26]  David S. Wishart,et al.  PlasMapper: a web server for drawing and auto-annotating plasmid maps , 2004, Nucleic Acids Res..

[27]  Alan Christoffels,et al.  Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. , 2004, Molecular biology and evolution.

[28]  M. Fontès,et al.  Ascorbic acid treatment corrects the phenotype of a mouse model of Charcot-Marie-Tooth disease , 2004, Nature Medicine.

[29]  Lukas Sommer,et al.  Efficient Isolation and Gene Expression Profiling of Small Numbers of Neural Crest Stem Cells and Developing Schwann Cells , 2004, The Journal of Neuroscience.

[30]  Klaas Vandepoele,et al.  Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[31]  U. Suter,et al.  The causes of Charcot-Marie-Tooth disease , 2003, Cellular and Molecular Life Sciences CMLS.

[32]  K. Nave,et al.  Therapeutic administration of progesterone antagonist in a model of Charcot-Marie-Tooth disease (CMT-1A) , 2003, Nature Medicine.

[33]  U. Suter,et al.  Distinct elements of the peripheral myelin protein 22 (PMP22) promoter regulate expression in Schwann cells and sensory neurons , 2003, Molecular and Cellular Neuroscience.

[34]  K. Petry,et al.  Inflammatory demyelination in a patient with CMT1A , 2003, Muscle & nerve.

[35]  K. Nave,et al.  Identification of the regulatory region of the peripheral myelin protein 22 (PMP22) gene that directs temporal and spatial expression in development and regeneration of peripheral nerves. , 2002, Molecular and cellular neurosciences.

[36]  F. Müller,et al.  Search for enhancers: teleost models in comparative genomic and transgenic analysis of cis regulatory elements. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.

[37]  T. Ott,et al.  Macrophage-related demyelination in peripheral nerves of mice deficient in the gap junction protein connexin 32 , 2002, Neuroscience Letters.

[38]  P. Patel,et al.  Identification of a positive regulatory element in the myelin‐specific promoter of the PMP22 gene , 2001, Journal of neuroscience research.

[39]  M. Kinoshita,et al.  The see-through medaka: A fish model that is transparent throughout life , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Marc Montminy,et al.  Transcriptional regulation by the phosphorylation-dependent factor CREB , 2001, Nature Reviews Molecular Cell Biology.

[41]  M. Watson,et al.  EGR2 Mutations in Inherited Neuropathies Dominant-Negatively Inhibit Myelin Gene Expression , 2001, Neuron.

[42]  J. Perea,et al.  Induced myelination and demyelination in a conditional mouse model of Charcot-Marie-Tooth disease type 1A. , 2001, Human molecular genetics.

[43]  K. Toyka,et al.  The Role of Macrophages in Demyelinating Peripheral Nervous System of Mice Heterozygously Deficient in P0 , 2001, The Journal of cell biology.

[44]  Lior Pachter,et al.  VISTA : visualizing global DNA sequence alignments of arbitrary length , 2000, Bioinform..

[45]  D. Sabéran-Djoneidi,et al.  Molecular dissection of the Schwann cell specific promoter of the PMP22 gene. , 2000, Gene.

[46]  R. Mirsky,et al.  Schwann cells and their precursors emerge as major regulators of nerve development , 1999, Trends in Neurosciences.

[47]  U. Suter,et al.  Characterization of peripheral myelin protein 22 in zebrafish (zPMP22) suggests an early role in the development of the peripheral nervous system , 1999, Journal of neuroscience research.

[48]  D. D'urso,et al.  Progesterone derivatives are able to influence peripheral myelin protein 22 and P0 gene expression: Possible mechanisms of action , 1999, Journal of neuroscience research.

[49]  M. Schumacher,et al.  Progesterone Stimulates the Activity of the Promoters of Peripheral Myelin Protein‐22 and Protein Zero Genes in Schwann Cells , 1998, Journal of neurochemistry.

[50]  U. Suter,et al.  Many facets of the peripheral myelin protein PMP22 in myelination and disease , 1998, Microscopy research and technique.

[51]  N. Benvenisty,et al.  Chromosomal mapping of Tmp (Emp1), Xmp (Emp2), and Ymp (Emp3), genes encoding membrane proteins related to Pmp22. , 1998, Genomics.

[52]  D. Figarella-Branger,et al.  Correlation between varying levels of PMP22 expression and the degree of demyelination and reduction in nerve conduction velocity in transgenic mice. , 1998, Human molecular genetics.

[53]  R. Overbeek,et al.  Searching for patterns in genomic data. , 1997, Trends in genetics : TIG.

[54]  Y. Agid,et al.  Charcot-Marie-Tooth disease type 1A with 17p11.2 duplication. Clinical and electrophysiological phenotype study and factors influencing disease severity in 119 cases. , 1997, Brain : a journal of neurology.

[55]  P. Angrand,et al.  Different thermostabilities of FLP and Cre recombinases: implications for applied site-specific recombination. , 1996, Nucleic acids research.

[56]  A. Aguzzi,et al.  Impaired Differentiation of Schwann Cells in Transgenic Mice with Increased PMP22 Gene Dosage , 1996, The Journal of Neuroscience.

[57]  D. Figarella-Branger,et al.  Construction of a mouse model of Charcot-Marie-Tooth disease type 1A by pronuclear injection of human YAC DNA. , 1996, Human molecular genetics.

[58]  J. Lupski,et al.  Regulation of tissue-specific expression of alternative peripheral myelin protein-22 (PMP22) gene transcripts by two promoters. , 1994, The Journal of biological chemistry.

[59]  Y. Wakamatsu,et al.  An efficient expression vector for transgenic medaka construction. , 1994, Molecular marine biology and biotechnology.

[60]  M. Westerfield,et al.  Clustering of muscle acetylcholine receptors requires motoneurons in live embryos, but not in cell culture , 1992, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[61]  M. Westerfield,et al.  Development and axonal outgrowth of identified motoneurons in the zebrafish , 1986, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[62]  T. Bullock,et al.  Evolution of myelin sheaths: Both lamprey and hagfish lack myelin , 1984, Neuroscience Letters.

[63]  K. Nave,et al.  Animal models of Charcot-Marie-Tooth disease type 1A , 2006 .

[64]  A. Murphy,et al.  Peripheral myelin protein 22 is in complex with alpha6beta4 integrin, and its absence alters the Schwann cell basal lamina. , 2006, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[65]  Chuong B. Do,et al.  Access the most recent version at doi: 10.1101/gr.926603 References , 2003 .

[66]  M. Schartl,et al.  Medaka — a model organism from the far east , 2002, Nature Reviews Genetics.

[67]  W. Macklin,et al.  Oligodendrocyte development and myelination in GFP‐transgenic zebrafish , 2005, Journal of neuroscience research.