A Smoluchowski model of crystallization dynamics of small colloidal clusters.

We investigate the dynamics of colloidal crystallization in a 32-particle system at a fixed value of interparticle depletion attraction that produces coexisting fluid and solid phases. Free energy landscapes (FELs) and diffusivity landscapes (DLs) are obtained as coefficients of 1D Smoluchowski equations using as order parameters either the radius of gyration or the average crystallinity. FELs and DLs are estimated by fitting the Smoluchowski equations to Brownian dynamics (BD) simulations using either linear fits to locally initiated trajectories or global fits to unbiased trajectories using Bayesian inference. The resulting FELs are compared to Monte Carlo Umbrella Sampling results. The accuracy of the FELs and DLs for modeling colloidal crystallization dynamics is evaluated by comparing mean first-passage times from BD simulations with analytical predictions using the FEL and DL models. While the 1D models accurately capture dynamics near the free energy minimum fluid and crystal configurations, predictions near the transition region are not quantitatively accurate. A preliminary investigation of ensemble averaged 2D order parameter trajectories suggests that 2D models are required to capture crystallization dynamics in the transition region.

[1]  A. Szabó,et al.  Electron transfer reaction dynamics in non-Debye solvents , 1998 .

[2]  Daniel J. Beltran-Villegas,et al.  Interfacial colloidal crystallization via tunable hydrogel depletants. , 2008, Langmuir : the ACS journal of surfaces and colloids.

[3]  Gerhard Hummer,et al.  Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular dynamics simulations , 2005 .

[4]  Michael A Bevan,et al.  Self-diffusion in submonolayer colloidal fluids near a wall. , 2006, The Journal of chemical physics.

[5]  Berend Smit,et al.  Understanding molecular simulation: from algorithms to applications , 1996 .

[6]  Gerhard Hummer,et al.  Coordinate-dependent diffusion in protein folding , 2009, Proceedings of the National Academy of Sciences.

[7]  D. Frenkel,et al.  Enhancement of protein crystal nucleation by critical density fluctuations. , 1997, Science.

[8]  P. Hänggi,et al.  Reaction-rate theory: fifty years after Kramers , 1990 .

[9]  Ernesto E. Borrero,et al.  Simulating the kinetics and thermodynamics of transitions via forward flux/umbrella sampling. , 2009, The journal of physical chemistry. B.

[10]  David Reguera,et al.  Kinetic reconstruction of the free-energy landscape. , 2008, The journal of physical chemistry. B.

[11]  Berend Smit,et al.  Molecular Dynamics Simulations , 2002 .

[12]  H. Risken Fokker-Planck Equation , 1996 .

[13]  Pradipkumar Bahukudumbi,et al.  Dynamic signature for the equilibrium percolation threshold of attractive colloidal fluids. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[14]  Bartosz A. Grzybowski,et al.  Electrostatic Self-Assembly of Binary Nanoparticle Crystals with a Diamond-Like Lattice , 2006, Science.

[15]  Daan Frenkel,et al.  Simulation of homogeneous crystal nucleation close to coexistence , 1996 .

[16]  Michael A. Bevan,et al.  Free energy landscapes for colloidal crystal assembly , 2011 .

[17]  J M Rubí,et al.  The mesoscopic dynamics of thermodynamic systems. , 2005, The journal of physical chemistry. B.

[18]  T. L. Hill,et al.  Thermodynamics of Small Systems , 2002 .

[19]  M. Brenner,et al.  The Free-Energy Landscape of Clusters of Attractive Hard Spheres , 2010, Science.

[20]  D. Wales Energy Landscapes by David Wales , 2004 .

[21]  Ioannis G Kevrekidis,et al.  Coarse-grained kinetic computations for rare events: application to micelle formation. , 2005, The Journal of chemical physics.

[22]  Samartha G. Anekal,et al.  Interpretation of conservative forces from Stokesian dynamic simulations of interfacial and confined colloids. , 2005, The Journal of chemical physics.

[23]  J. Savage,et al.  Experimental evidence for two-step nucleation in colloidal crystallization. , 2009, Physical review letters.

[24]  H. Risken The Fokker-Planck equation : methods of solution and applications , 1985 .

[25]  Daan Frenkel,et al.  Quantitative prediction of crystal-nucleation rates for spherical colloids: a computational approach. , 2004, Annual review of physical chemistry.

[26]  Michael A. Bevan,et al.  Spatially controlled reversible colloidal self-assembly. , 2009, The Journal of chemical physics.

[27]  G. Torrie,et al.  Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling , 1977 .