Host lifestyle affects human microbiota on daily timescales
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Eric J Alm | Jonathan Friedman | Lawrence A. David | E. Alm | Jonathan Friedman | M. Blackburn | S. Erdman | Arne C. Materna | Allison Perrotta | Maria I Campos-Baptista | A. Perrotta | Lawrence A David | Arne C Materna | Matthew C Blackburn | Susan E Erdman | L. David
[1] H. Harmsen,et al. Cultured Representatives of Two Major Phylogroups of Human Colonic Faecalibacterium prausnitzii Can Utilize Pectin, Uronic Acids, and Host-Derived Substrates for Growth , 2011, Applied and Environmental Microbiology.
[2] Adelchi Azzalini,et al. The R Package bild for the Analysis of Binary Longitudinal Data , 2012 .
[3] R. Baker. Reassessment of Some Fruit and Vegetable Pectin Levels , 1997 .
[4] R. Knight,et al. The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice , 2009, Science Translational Medicine.
[5] R. Knight,et al. Moving pictures of the human microbiome , 2011, Genome Biology.
[6] J. Clemente,et al. Human gut microbiome viewed across age and geography , 2012, Nature.
[7] S. Humphrey,et al. A review of saliva: normal composition, flow, and function. , 2001, The Journal of prosthetic dentistry.
[8] William A. Walters,et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample , 2010, Proceedings of the National Academy of Sciences.
[9] Rob J Hyndman,et al. Automatic Time Series Forecasting: The forecast Package for R , 2008 .
[10] Andrew P. Martin. Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities , 2002, Applied and Environmental Microbiology.
[11] Zaid Abdo,et al. Temporal Dynamics of the Human Vaginal Microbiota , 2012, Science Translational Medicine.
[12] Korbinian Strimmer,et al. fdrtool: a versatile R package for estimating local and tail area-based false discovery rates , 2008, Bioinform..
[13] H. Flint,et al. Reduced Dietary Intake of Carbohydrates by Obese Subjects Results in Decreased Concentrations of Butyrate and Butyrate-Producing Bacteria in Feces , 2006, Applied and Environmental Microbiology.
[14] J. Neu,et al. Succession of microbial consortia in the developing infant gut microbiome , 2011 .
[15] Ann V Rowlands,et al. Saliva flow rate, total protein concentration and osmolality as potential markers of whole body hydration status during progressive acute dehydration in humans. , 2004, Archives of oral biology.
[16] S. Massart,et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa , 2010, Proceedings of the National Academy of Sciences.
[17] G. Dougan,et al. Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota , 2007, PLoS biology.
[18] D. Haydon,et al. Alternative stable states in ecology , 2003 .
[19] J. Parkhill,et al. Dominant and diet-responsive groups of bacteria within the human colonic microbiota , 2011, The ISME Journal.
[20] M Cardinal,et al. On the application of integer-valued time series models for the analysis of disease incidence. , 1999, Statistics in medicine.
[21] Jonathan A. Eisen,et al. Human gut microbiome adopts an alternative state following small bowel transplantation , 2009, Proceedings of the National Academy of Sciences.
[22] E. Mardis,et al. An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.
[23] Otto X. Cordero,et al. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations , 2012, Proceedings of the National Academy of Sciences.
[24] A. Viale,et al. Profound Alterations of Intestinal Microbiota following a Single Dose of Clindamycin Results in Sustained Susceptibility to Clostridium difficile-Induced Colitis , 2011, Infection and Immunity.
[25] Achim Zeileis,et al. Diagnostic Checking in Regression Relationships , 2015 .
[26] Eric Jones,et al. SciPy: Open Source Scientific Tools for Python , 2001 .
[27] R. Knight,et al. Bacterial Community Variation in Human Body Habitats Across Space and Time , 2009, Science.
[28] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[29] D. Relman,et al. The Application of Ecological Theory Toward an Understanding of the Human Microbiome , 2012, Science.
[30] Robert C. Edgar,et al. BIOINFORMATICS APPLICATIONS NOTE , 2001 .
[31] Y. Belkaid,et al. Acute Gastrointestinal Infection Induces Long-Lived Microbiota-Specific T Cell Responses , 2012, Science.
[32] P. A. Blight. The Analysis of Time Series: An Introduction , 1991 .
[33] Yunwei Wang,et al. Dietary fat-induced taurocholic acid production promotes pathobiont and colitis in IL-10−/− mice , 2012, Nature.
[34] B. Bohannan,et al. Phylogenetic clustering and overdispersion in bacterial communities. , 2006, Ecology.
[35] G R Gibson,et al. Selective stimulation of bifidobacteria in the human colon by oligofructose and inulin. , 1995, Gastroenterology.
[36] D. Dickey,et al. Testing for unit roots in autoregressive-moving average models of unknown order , 1984 .
[37] F. Bushman,et al. Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes , 2011, Science.
[38] P. Turnbaugh,et al. Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.
[39] Jeffrey Heer,et al. Sizing the horizon: the effects of chart size and layering on the graphical perception of time series visualizations , 2009, CHI.
[40] D. Relman,et al. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation , 2010, Proceedings of the National Academy of Sciences.
[41] R. Knight,et al. PyCogent: a toolkit for making sense from sequence , 2007, Genome Biology.
[42] J. Clemente,et al. The Long-Term Stability of the Human Gut Microbiota , 2013 .
[43] Lawrence A. David,et al. Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.
[44] Skipper Seabold,et al. Statsmodels: Econometric and Statistical Modeling with Python , 2010, SciPy.
[45] J. Doré,et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.
[46] A. Biesbrock,et al. Treatment outcomes of dental flossing in twins: molecular analysis of the interproximal microflora. , 2008, Journal of periodontology.
[47] Les Dethlefsen,et al. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing , 2008, PLoS biology.
[48] E. Zoetendal,et al. Temperature Gradient Gel Electrophoresis Analysis of 16S rRNA from Human Fecal Samples Reveals Stable and Host-Specific Communities of Active Bacteria , 1998, Applied and Environmental Microbiology.
[49] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[50] Jonathan Friedman,et al. Inferring Correlation Networks from Genomic Survey Data , 2012, PLoS Comput. Biol..
[51] 43 Dietary Fat-Induced Taurocholic Acid Production Promotes Pathobiont and Colitis in IL-10-/- Mice , 2012 .
[52] C. Granger,et al. Spurious regressions in econometrics , 1974 .
[53] John Aitchison,et al. The Statistical Analysis of Compositional Data , 1986 .
[54] Anders F. Andersson,et al. Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome , 2010, PloS one.
[55] M. Blaser,et al. Antibiotics in early life alter the murine colonic microbiome and adiposity , 2012, Nature.