The crystal structure of yeast copper thionein: the solution of a long-lasting enigma.

We report here the crystal structure of yeast copper thionein (Cu-MT), determined at 1.44-A resolution. The Cu-MT structure shows the largest known oligonuclear Cu(I) thiolate cluster in biology, consisting of six trigonally and two digonally coordinated Cu(I) ions. This is at variance with the results from previous spectroscopic determinations, which were performed on MT samples containing seven rather than eight metal ions. The protein backbone has a random coil structure with the loops enfolding the copper cluster, which is located in a cleft where it is bound to 10 cysteine residues. The protein structure is somewhat different from that of Ag(7)-MT and similar, but not identical, to that of Cu(7)-MT. Besides the different structure of the metal cluster, the main differences lie in the cysteine topology and in the conformation of some portions of the backbone. The present structure suggests that Cu-MT, in addition to its role as a safe depository for copper ions in the cell, may play an active role in the delivery of copper to metal-free chaperones.

[1]  C. W. Peterson,et al.  3D solution structure of copper and silver‐substituted yeast metallothioneins , 1996, FEBS letters.

[2]  R. Casareno,et al.  Intracellular pathways of copper trafficking in yeast and humans. , 1999, Advances in experimental medicine and biology.

[3]  U. Weser,et al.  Homologous copper(I)-(thiolate)2-chromophores in yeast copper thionein. , 1977, Biochimica et biophysica acta.

[4]  Anastassis Perrakis,et al.  Automated protein model building combined with iterative structure refinement , 1999, Nature Structural Biology.

[5]  R. Mehra,et al.  Establishment of the Metal-to-Cysteine Connectivities in Silver-Substituted Yeast Metallothionein , 1991 .

[6]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[7]  G Rotilio,et al.  Yeast copper-thionein can reconstitute the Japanese-lacquer-tree (Rhus vernicifera) laccase from the Type 2-copper-depleted enzyme via a direct copper(I)-transfer mechanism. , 1983, The Biochemical journal.

[8]  E. D. Harris,et al.  Cellular copper transport and metabolism. , 2003, Annual review of nutrition.

[9]  U. Weser,et al.  Differently bound copper(I) in yeast Cu8-thionein. , 1988, Biochimica et biophysica acta.

[10]  U. Weser,et al.  A naturally occurring Cu-thionein in Saccharomyces cerevisiae. , 1975, Hoppe-Seyler's Zeitschrift fur physiologische Chemie.

[11]  D. Hamer,et al.  Yeast metallothionein. Sequence and metal-binding properties. , 1985, The Journal of biological chemistry.

[12]  I. Bertini,et al.  High resolution solution structure of the protein part of Cu7 metallothionein. , 2000, European journal of biochemistry.

[13]  Gerald Henkel,et al.  Metallothioneins: zinc, cadmium, mercury, and copper thiolates and selenolates mimicking protein active site features--structural aspects and biological implications. , 2004, Chemical reviews.

[14]  U. Weser,et al.  Purification of yeast copper-metallothionein. , 1991, Methods in enzymology.

[15]  M Vasák,et al.  Metallothioneins: new functional and structural insights. , 2000, Current opinion in chemical biology.

[16]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[17]  I. Voskoboinik,et al.  Molecular mechanisms of copper homeostasis. , 1999, Biochemical and biophysical research communications.

[18]  U. Weser,et al.  Cu(I)-thionein release from copper-loaded yeast cells , 2005, Biology of Metals.

[19]  Y. Li,et al.  Analogous copper(I) coordination in metallothionein from yeast and the separate domains of the mammalian protein , 2005, Biometals.

[20]  D. Winge,et al.  X-ray absorption studies of yeast copper metallothionein. , 1988, The Journal of biological chemistry.

[21]  Thomas C. Terwilliger,et al.  Automated MAD and MIR structure solution , 1999, Acta crystallographica. Section D, Biological crystallography.

[22]  Thomas V. O'Halloran,et al.  Metallochaperones, an Intracellular Shuttle Service for Metal Ions* , 2000, The Journal of Biological Chemistry.

[23]  A. Desideri,et al.  Reconstitution of stellacyanin as a case of direct Cu(I) transfer between yeast copper thionein and ‘blue’ copper apoprotein , 1983, FEBS letters.

[24]  D. Hamer,et al.  Characterization of the copper-thiolate cluster in yeast metallothionein and two truncated mutants. , 1988, The Journal of biological chemistry.

[25]  M. Harrison,et al.  Molecular mechanisms of copper metabolism and the role of the Menkes disease protein , 1999, Journal of biochemical and molecular toxicology.

[26]  K. Titani,et al.  The growth inhibitory factor that is deficient in the Alzheimer's disease brain is a 68 amino acid metallothionein-like protein , 1991, Neuron.

[27]  V. Culotta,et al.  Copper ions and the regulation ofSaccharomyces cerevisiae metallothionein genes under aerobic and anaerobic conditions , 1996, Molecular and General Genetics MGG.

[28]  A. Desideri,et al.  An EXAFS study of the copper accumulated by yeast cells , 2005, Biology of Metals.

[29]  R. Sayre,et al.  FLUORESCENCE OF Cu, Au AND Ag MERCAPTIDES , 1971 .

[30]  M. Harrison,et al.  Mechanisms for protection against copper toxicity. , 1998, The American journal of clinical nutrition.

[31]  D. Winge,et al.  Copper- and silver-substituted yeast metallothioneins: sequential 1H NMR assignments reflecting conformational heterogeneity at the C terminus. , 1993, Biochemistry.

[32]  D. Thiele,et al.  Molecular mechanisms of copper uptake and distribution. , 2002, Current opinion in chemical biology.

[33]  D E McRee,et al.  XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density. , 1999, Journal of structural biology.

[34]  F. Lytle Solution Luminescence of Metal Complexes , 1970 .

[35]  A. Rosenzweig,et al.  Copper delivery by metallochaperone proteins. , 2001, Accounts of chemical research.

[36]  R. Palmiter The elusive function of metallothioneins. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[37]  A. Rosato,et al.  Structural genomics of proteins involved in copper homeostasis. , 2003, Accounts of chemical research.

[38]  Phasing at high resolution using Ta6Br12 cluster. , 2003, Acta crystallographica. Section D, Biological crystallography.

[39]  C. Luchinat,et al.  The Cu(I)7 cluster in yeast copper thionein survives major shortening of the polypeptide backbone as deduced from electronic absorption, circular dichroism, luminescence and 1H NMR , 2003, JBIC Journal of Biological Inorganic Chemistry.

[40]  I. Bertini,et al.  A redox switch in CopC: An intriguing copper trafficking protein that binds copper(I) and copper(II) at different sites , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Thomas V. O'Halloran,et al.  Transition Metal Speciation in the Cell: Insights from the Chemistry of Metal Ion Receptors , 2003, Science.

[42]  H. Joh,et al.  A Physiological Role for Saccharomyces cerevisiae Copper/Zinc Superoxide Dismutase in Copper Buffering (*) , 1995, The Journal of Biological Chemistry.

[43]  Robert Huber,et al.  Ta6Br122+, a tool for phase determination of large biological assemblies by X-ray crystallography , 1997 .

[44]  S Weinstein,et al.  The suitability of multi-metal clusters for phasing in crystallography of large macromolecular assemblies. , 1996, Structure.