Cytoscape stringApp: Network analysis and visualization of proteomics data
暂无分享,去创建一个
Jan Gorodkin | Lars J Jensen | John H Morris | Nadezhda T Doncheva | Nadezhda T. Doncheva | J. Gorodkin | L. Jensen | N. Doncheva | J. Morris | L. Jensen
[1] David J. Galas,et al. RCytoscape: tools for exploratory network analysis , 2013, BMC Bioinformatics.
[2] Janos X. Binder,et al. DISEASES: Text mining and data integration of disease–gene associations , 2014, bioRxiv.
[3] S. Brunak,et al. Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer , 2017, Cell reports.
[4] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[5] Damian Szklarczyk,et al. STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data , 2015, Nucleic Acids Res..
[6] U. Hobohm,et al. Selection of representative protein data sets , 1992, Protein science : a publication of the Protein Society.
[7] Allan Kuchinsky,et al. enhancedGraphics: a Cytoscape app for enhanced node graphics , 2014, F1000Research.
[8] Jan Gorodkin,et al. TISSUES 2.0: an integrative web resource on mammalian tissue expression , 2018, Database J. Biol. Databases Curation.
[9] D. Krackhardt,et al. Visualizing Complexity in Networks : Seeing Both the Forest and the Trees , 2003 .
[10] A. Kornblihtt,et al. The carboxy terminal domain of RNA polymerase II and alternative splicing. , 2010, Trends in biochemical sciences.
[11] Laurence A. Brown,et al. Meta-analysis of transcriptomic datasets identifies genes enriched in the mammalian circadian pacemaker , 2017, Nucleic acids research.
[12] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[13] Lizhen Shi,et al. Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data1[OPEN] , 2017, Plant Physiology.
[14] Aidan P. Tay,et al. PTMOracle: A Cytoscape App for Covisualizing and Coanalyzing Post-Translational Modifications in Protein Interaction Networks. , 2017, Journal of proteome research.
[15] Damian Szklarczyk,et al. The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible , 2016, Nucleic Acids Res..
[16] Rajarshi Guha,et al. Pharos: Collating protein information to shed light on the druggable genome , 2016, Nucleic Acids Res..
[17] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[18] Gary D. Bader,et al. clusterMaker: a multi-algorithm clustering plugin for Cytoscape , 2011, BMC Bioinformatics.
[19] Christian Stolte,et al. COMPARTMENTS: unification and visualization of protein subcellular localization evidence , 2014, Database J. Biol. Databases Curation.
[20] Tsippi Iny Stein,et al. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses , 2016, Current protocols in bioinformatics.
[21] Cynthia A. Brewer,et al. ColorBrewer.org: An Online Tool for Selecting Colour Schemes for Maps , 2003 .
[22] Paul Shannon,et al. CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API , 2015, F1000Research.
[23] Michael L. Creech,et al. Integration of biological networks and gene expression data using Cytoscape , 2007, Nature Protocols.