Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism
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Wolfram Weckwerth | Franz Hadacek | David Lyon | Thomas Nägele | Volker Egelhofer | Xiaoliang Sun | Hannes Doerfler | T. Nägele | W. Weckwerth | L. Fragner | F. Hadacek | V. Egelhofer | Xiaoliang Sun | Hannes Doerfler | David Lyon | Lena Fragner
[1] Thomas Nägele,et al. Identification of a metabolic bottleneck for cold acclimation in Arabidopsis thaliana. , 2012, The Plant journal : for cell and molecular biology.
[2] Joost T. van Dongen,et al. A rapid approach for phenotype‐screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment , 2008, Proteomics.
[3] B. Usadel,et al. Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range. , 2008, Plant, cell & environment.
[4] Asaph Aharoni,et al. Expression of a bacterial feedback-insensitive 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism. , 2012, The New phytologist.
[5] Kazuo Shinozaki,et al. MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites , 2008, The Plant journal : for cell and molecular biology.
[6] J. Kopka,et al. Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation - evidence for a role of raffinose in cold acclimation , 2004 .
[7] C. Granger. Investigating causal relations by econometric models and cross-spectral methods , 1969 .
[8] J. Morgan,et al. Mathematical modeling of plant metabolic pathways. , 2002, Metabolic engineering.
[9] B. M. Lange,et al. Experimental and mathematical approaches to modeling plant metabolic networks. , 2007, Phytochemistry.
[10] Wolfram Weckwerth,et al. Mathematical Modeling of Plant Metabolism―From Reconstruction to Prediction , 2012, Metabolites.
[11] O. Fiehn,et al. Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co‐regulation in biochemical networks , 2004, Proteomics.
[12] W. Weckwerth. Metabolomics in systems biology. , 2003, Annual review of plant biology.
[13] P. Durek,et al. Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast. , 2010, Omics : a journal of integrative biology.
[14] C Giersch. Mathematical modelling of metabolism. , 2000, Current opinion in plant biology.
[15] B. Winkel-Shirley,et al. Biosynthesis of flavonoids and effects of stress. , 2002, Current opinion in plant biology.
[16] K. Kloppstech,et al. The protective functions of carotenoid and flavonoid pigments against excess visible radiation at chilling temperature investigated in Arabidopsisnpq and tt mutants , 2001, Planta.
[17] Wolfram Weckwerth,et al. Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing , 2011, Analytical and bioanalytical chemistry.
[18] Oliver Sawodny,et al. Mathematical Modeling of the Central Carbohydrate Metabolism in Arabidopsis Reveals a Substantial Regulatory Influence of Vacuolar Invertase on Whole Plant Carbon Metabolism1[W] , 2010, Plant Physiology.
[19] Gad Galili,et al. New insights into the shikimate and aromatic amino acids biosynthesis pathways in plants. , 2010, Molecular plant.
[20] Wolfram Weckwerth,et al. COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data , 2012, Metabolomics.
[21] W. Weckwerth,et al. Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species , 2010, PloS one.
[22] S. Abrahams,et al. The structure of the major anthocyanin in Arabidopsis thaliana. , 2002, Phytochemistry.
[23] W. Weckwerth. Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. , 2011, Journal of proteomics.
[24] Yves Gibon,et al. GMD@CSB.DB: the Golm Metabolome Database , 2005, Bioinform..
[25] K. Paszkiewicz,et al. The influence of ascorbate on anthocyanin accumulation during high light acclimation in Arabidopsis thaliana: further evidence for redox control of anthocyanin synthesis. , 2012, Plant, cell & environment.
[26] D. Xie,et al. Features of anthocyanin biosynthesis in pap1-D and wild-type Arabidopsis thaliana plants grown in different light intensity and culture media conditions , 2010, Planta.
[27] Yves Gibon,et al. Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. , 2011, The New phytologist.
[28] M. Hirai,et al. Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. , 2005, The Plant journal : for cell and molecular biology.
[29] A. Aharoni,et al. Expression of a bacterial bi-functional chorismate mutase/prephenate dehydratase modulates primary and secondary metabolism associated with aromatic amino acids in Arabidopsis. , 2009, The Plant journal : for cell and molecular biology.
[30] Jürgen Kurths,et al. Observing and Interpreting Correlations in Metabolic Networks , 2003, Bioinform..
[31] G. Coruzzi,et al. Light represses transcription of asparagine synthetase genes in photosynthetic and nonphotosynthetic organs of plants , 1991, Molecular and cellular biology.
[32] J. Wolfender,et al. Evaluation of quadrupole time-of-flight tandem mass spectrometry and ion-trap multiple-stage mass spectrometry for the differentiation of C-glycosidic flavonoid isomers. , 2001, Journal of chromatography. A.